mRNA_P-littoralis_Contig85.78.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig85.78.1
Unique NamemRNA_P-littoralis_Contig85.78.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig85.78.1 vs. uniprot
Match: D7FTR7_ECTSI (Cathepsin L-like proteinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTR7_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.160e-7
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:  416 QVKNSWGPEWGAEGYILLAREADQEGGE 499
            +VKNSWGPEWGAEGYILL READQEGGE
Sbjct:  435 KVKNSWGPEWGAEGYILLKREADQEGGE 462
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTR7_ECTSI2.160e-792.86Cathepsin L-like proteinase n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig85contigP-littoralis_Contig85:336598..337097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size500
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791714.251653-UTR-P-littoralis_Contig85:336597..3367431680791714.251653-UTR-P-littoralis_Contig85:336597..336743Pylaiella littoralis U1_48UTRP-littoralis_Contig85 336598..336743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791714.2640638-CDS-P-littoralis_Contig85:336743..3370971680791714.2640638-CDS-P-littoralis_Contig85:336743..337097Pylaiella littoralis U1_48CDSP-littoralis_Contig85 336744..337097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig85.78.1prot_P-littoralis_Contig85.78.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig85 336744..337097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig85.78.1

>prot_P-littoralis_Contig85.78.1 ID=prot_P-littoralis_Contig85.78.1|Name=mRNA_P-littoralis_Contig85.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
DGIKYWKVKFIRVSREGAGTVSGGWVLQDGCDVCWGFIGSRGLLCVVISC
ISFRCIQYGFIVESKTRRGRRCLETPKAASYLHLVELDCRHRLARAIVLL
TCLTPTFMVGAGGTCTD*
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mRNA from alignment at P-littoralis_Contig85:336598..337097-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig85.78.1 ID=mRNA_P-littoralis_Contig85.78.1|Name=mRNA_P-littoralis_Contig85.78.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=500bp|location=Sequence derived from alignment at P-littoralis_Contig85:336598..337097- (Pylaiella littoralis U1_48)
GACGGCATCAAATACTGGAAGGTGAAATTTATTCGTGTATCGCGAGAAGG
GGCGGGAACGGTTTCTGGTGGTTGGGTACTTCAGGATGGATGCGACGTTT
GCTGGGGTTTCATCGGGTCTAGAGGGCTTTTGTGTGTTGTGATATCATGC
ATTTCATTCCGGTGCATACAGTACGGCTTCATTGTGGAATCAAAAACGCG
AAGGGGACGCCGATGCTTGGAAACGCCGAAAGCCGCATCATACTTGCACT
TGGTTGAGCTCGACTGCCGTCACAGGCTCGCTCGTGCCATCGTGCTACTG
ACCTGTTTGACTCCAACTTTCATGGTTGGTGCCGGCGGTACGTGTACGGA
TTAGGCCAGAAAGTGTCGTAACCAAGCCCCCTCCCGGACACGCTTTCATT
GTTTGTCGACCTCCGCAGGTTAAGAACTCCTGGGGCCCCGAGTGGGGTGC
CGAGGGGTACATCCTCCTCGCGCGCGAGGCTGACCAGGAGGGTGGGGAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig85:336598..337097-

>mRNA_P-littoralis_Contig85.78.1 ID=mRNA_P-littoralis_Contig85.78.1|Name=mRNA_P-littoralis_Contig85.78.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig85:336598..337097- (Pylaiella littoralis U1_48)
GACGGCATCAAATACTGGAAGGTGAAATTTATTCGTGTATCGCGAGAAGG
GGCGGGAACGGTTTCTGGTGGTTGGGTACTTCAGGATGGATGCGACGTTT
GCTGGGGTTTCATCGGGTCTAGAGGGCTTTTGTGTGTTGTGATATCATGC
ATTTCATTCCGGTGCATACAGTACGGCTTCATTGTGGAATCAAAAACGCG
AAGGGGACGCCGATGCTTGGAAACGCCGAAAGCCGCATCATACTTGCACT
TGGTTGAGCTCGACTGCCGTCACAGGCTCGCTCGTGCCATCGTGCTACTG
ACCTGTTTGACTCCAACTTTCATGGTTGGTGCCGGCGGTACGTGTACGGA
TTAG
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