mRNA_P-littoralis_Contig85.43.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig85.43.1
Unique NamemRNA_P-littoralis_Contig85.43.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig85contigP-littoralis_Contig85:185472..189360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2821
Hectar predicted targeting categoryother localisation
Exons3
Cds size1413
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791714.0056562-UTR-P-littoralis_Contig85:185471..1861111680791714.0056562-UTR-P-littoralis_Contig85:185471..186111Pylaiella littoralis U1_48UTRP-littoralis_Contig85 185472..186111 -
1680791714.0193293-UTR-P-littoralis_Contig85:186399..1868751680791714.0193293-UTR-P-littoralis_Contig85:186399..186875Pylaiella littoralis U1_48UTRP-littoralis_Contig85 186400..186875 -
1680791714.031421-UTR-P-littoralis_Contig85:187655..1876891680791714.031421-UTR-P-littoralis_Contig85:187655..187689Pylaiella littoralis U1_48UTRP-littoralis_Contig85 187656..187689 -
1680791714.0542908-UTR-P-littoralis_Contig85:189102..1893601680791714.0542908-UTR-P-littoralis_Contig85:189102..189360Pylaiella littoralis U1_48UTRP-littoralis_Contig85 189103..189360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791714.0445278-CDS-P-littoralis_Contig85:187689..1891021680791714.0445278-CDS-P-littoralis_Contig85:187689..189102Pylaiella littoralis U1_48CDSP-littoralis_Contig85 187690..189102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig85.43.1prot_P-littoralis_Contig85.43.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig85 187690..189102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig85.43.1

>prot_P-littoralis_Contig85.43.1 ID=prot_P-littoralis_Contig85.43.1|Name=mRNA_P-littoralis_Contig85.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=471bp
MPRECASSGCVKDARFGAEGSETVKFCSLHAKDGMIDTRYKRCGQKGCNK
WPSYGVEGSKKVEFCSQHAKEGMIDVRNKRCGHQECTRHPSYGVAGSKRA
EYCAQHAKEGMINIIKKKCRQKGCTKWPTYGVEGGKQTEFCAQHAKDEMV
RICNKWCRHEGCTKRPTYGVEGSKQAEFCVGHATEGMVDIFNKRCRHEGC
TKGPTYGVEGSKKAVFCAQHAEDGMTSIRKRCGQQGCCKQPSYGVEGSKN
REFCVTHAKDGMVDILNKRCGHQGCTRQPSYGVEGSRKREFCSQHAKDGM
IDIRYKRCGHEGCSEQPSYGVEGSKKAEFCAEHAKDGMSNVLRKRCRHQG
CTRLPSHGVEGTKKVEFCSQHAKDGMVNRRRHRAFIGSANSGRQGRHGVG
MRDVTHPGGAGETHNTRTTSSTESTRGNKRVRQTRAASAGPAPVKEETME
TITAGRVHPWGRDTVRQRRK*
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mRNA from alignment at P-littoralis_Contig85:185472..189360-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig85.43.1 ID=mRNA_P-littoralis_Contig85.43.1|Name=mRNA_P-littoralis_Contig85.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3889bp|location=Sequence derived from alignment at P-littoralis_Contig85:185472..189360- (Pylaiella littoralis U1_48)
CGTTGCTTTCGCAGCAAGCCGCGGTCTGTGCGGAGAGCACCAGCAGTGAC
TAAAGTCATAACCCCAAATGGCACTGGCAGCTCAAATTTAATAGGGGCTC
CGAAGATTGTACCGTATGGCTGTACCGTTGCGACACTCACAAACCTTCGG
CGCAATTAGAAAATAGAGCGGCAAACCATTGCACGTGCGTGCTCTATCCC
CGAATCCCGCCAACATGCTTTGTACAAAGAGGTTACAGGGGGGCGAGGGG
ATACAGCAATGCCCAGGGAATGCGCTTCGTCCGGCTGTGTCAAGGACGCG
AGGTTCGGCGCGGAAGGGAGCGAAACGGTCAAGTTCTGCTCCCTGCATGC
CAAGGATGGAATGATCGATACCCGCTACAAGAGATGTGGACAAAAAGGGT
GCAATAAGTGGCCGTCGTATGGTGTGGAGGGGAGCAAAAAGGTCGAGTTC
TGCTCTCAGCATGCCAAGGAGGGAATGATCGACGTCCGCAACAAGAGGTG
CGGACACCAAGAGTGCACCAGGCATCCGTCGTACGGTGTGGCGGGAAGCA
AAAGAGCCGAGTACTGCGCTCAGCATGCCAAGGAGGGGATGATCAACATC
ATAAAGAAGAAGTGCCGACAGAAAGGGTGTACAAAGTGGCCGACGTACGG
TGTGGAGGGAGGCAAGCAGACCGAGTTCTGTGCTCAGCATGCCAAGGATG
AAATGGTTCGCATCTGTAATAAGTGGTGCCGACACGAGGGGTGCACCAAA
AGGCCGACGTACGGTGTGGAGGGGAGCAAACAGGCCGAGTTCTGTGTTGG
GCATGCTACGGAGGGAATGGTCGACATATTCAACAAGAGGTGCAGACACG
AGGGGTGCACAAAGGGTCCGACGTACGGTGTGGAGGGCAGCAAAAAGGCC
GTGTTCTGCGCTCAGCATGCCGAAGATGGAATGACCAGTATCCGCAAGAG
GTGTGGACAGCAAGGGTGCTGCAAGCAGCCATCGTATGGTGTGGAGGGGA
GCAAAAATAGGGAGTTCTGTGTTACGCATGCCAAAGATGGAATGGTTGAC
ATCCTAAACAAGAGGTGCGGACACCAAGGGTGCACCAGGCAGCCGTCGTA
CGGTGTGGAGGGGAGCAGAAAAAGAGAGTTCTGCTCTCAGCATGCCAAGG
ATGGAATGATCGACATCCGCTACAAGAGATGCGGACACGAAGGGTGCAGC
GAGCAGCCATCGTACGGTGTGGAGGGAAGCAAAAAGGCCGAGTTCTGTGC
TGAGCACGCTAAGGACGGAATGAGCAACGTCCTCCGAAAGAGGTGCAGAC
ACCAAGGGTGCACCAGGCTTCCGTCGCACGGTGTGGAAGGGACCAAAAAG
GTCGAGTTCTGCTCTCAGCATGCGAAGGATGGAATGGTGAATAGGAGGCG
GCACCGAGCTTTCATCGGGAGCGCGAACAGCGGCCGACAAGGGCGTCATG
GTGTAGGTATGCGTGACGTGACGCACCCTGGTGGCGCAGGTGAGACACAT
AATACCAGAACCACCTCGTCTACGGAGAGCACGCGCGGTAATAAACGAGT
CCGCCAGACCAGGGCCGCTTCAGCGGGTCCTGCGCCGGTCAAAGAAGAGA
CAATGGAAACTATAACGGCAGGCAGAGTTCATCCTTGGGGCCGGGACACT
GTGCGGCAAAGGCGGAAGTAAGATTCCCTTGCGGGCATGTACGGGGCAGC
GAAAGGTACGTTGCAAACGAGTCCTCTCTGATCCGTGTTGTGTCTCATCT
TGGTGTGGGTTCTGGTTGCAGCAGCATGCATTTACATCTGCATGGTGTGC
GTTTGTCTGGATCCTGTCAAATGCGCCGAGGCCCCAGGTGGCTGTTCGAC
GACACACTCATGTGTGATAGTCCCCTCGGTGTATGTACTGGGATGGTGCT
CAGGTGGATGTAACTATATTTTTTTGTTCCACCATCCCAATACAACGAAC
ATTATTCTGCCTACAAGTACCACTTCTGCTCTCTCTGTGTGCGATGATTG
TATGGGATGTACTTCAAGTTCAAAGTATAGCCACATTCATAATGTATAGT
TCGTACAACATTTTGTATTGAAATTTCAATGAAGACATTTCAAAGTTGTC
TAAAGGTCGGTGTGTGTGAAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAAAGGGCGAGATTATTCGGTCGTGCACGGAACCAC
GCCCATGAAACCACGCGCACAGGTAGTTTAGATTTCACGAATATGATGTG
CACCTGCAATGCACGCGCACCATAGCCTCGATTCGCTTATTTTCTTGACA
GTACTTCGAATCATATCGAAATACATACGGAGTAATATGCACTACCAATT
TCAACGTGTGCAAGTCGGCTATTTCAAGCAACCACCACACACCACATGCA
TATTTTGCATATGTCATCATCATTTAGTCTTGTGTCTCGCCTCTCAACTG
CTGCATGTCTATCTTTCGTTGCATTCCTCTTTCAGATTGATCAAGCGAAC
CGTAGCTGACGGGAAGGAAGTCATGCAGCGATCAAGGAGCAGCTTAGCAA
AGACAACCCTCGTTGGGAGGGTGGCAGCTTCGGTTTGGCGACGCAACATA
TGCGGCCACCAGCGGGGAAACCCCACGAAGGCTTGCTCTAGCCTTCGTTG
CGGGAAGCTCGTGCAATGGCAATGTGCGTTGCTTTGCGCTAGATGTTCGC
TGCCATGTCTTTTTGTTTGTTGCGGTTGGCTTGTACGAAACGGGTTGCTG
TTACCAGCGTGATAATTTTTGTATGATTGAAATTGTTTCATTCGATTTGA
GGGAAACGTACTGGGTGGGCGCGCTTCGTCTGCTGATGATGCTGTGTCGT
GGGTATGTTCGGAGCAGGATCGCGGCGCTGTACTGGCTTGTCGTCGTGTA
TGTGCTTTTTTTTTGGGGGTCCCCGAAGACAGTTTCATAATGACAAGGAG
TTCCAAGAGAGGCGGTACATTTTCTCTTTGATGTTCGCTGCCATGTCTTT
TTGTTTGTTGCGGTTGGCTTGTACGAAACGGGTTGCTGTTACCAGCGTGA
TAATTTTTGTATGATTGAAATTGTTTCATTCGATTTGAGGGAAACGTACT
GGGTGGGCGCGCTTCGTCTGCTGATGATGCTGTGTCGTGGGTATGTTCGG
AGCAGGATCGCGGCGCTGTACTGGCTTGTCGTCGTGTATGTGCTTTTTTT
TTGGGGGTCCCCGAAGACAGTTTCATAATGACAAGGAGTTCCAAGAGAGG
CGGTACATTTTCTCTTTAGAAAGCTTGGGCAAGCGGGGTTGATCAGGGGG
GCCGAGCGTGTGTGTCAAGCCCCGACTTCTTTGCTGCACTTTTTCGTTGC
TTGTTTTTTGCTGAGCTTCTAGCCCGGAGACGCTTTGGATGGGTAGAATG
GCGGAGGTTTGTGTACGACTCCTTCCAGGGCGAGGCTGTCCCCAGCGAGG
TTGTTTCAAGACGGGATCACGTTGGTTTTCCATGGAATGCTACGGCTGAC
TGAGAGATGGATAAACGAAGACCCTCACCAAAAAATGCTACTTGCAAGTA
GTACCGAGTGCCGTAAAGTCTGTGTAGGCGACTGCACCGAGGGTCTTGTT
CGTTCCATAATGCTTCTCACCAGTGAATCAGTTGTCGTTTCTATTGCCTA
CGCCGTCTATTGGCTTCAATTATGTTTTGCGGCACTCGTAGGTCAGTACC
TACTGGGGCGAAGAATACATCCTCCTCAAGCGGGAGGCCGCTCAGTATAG
TAGGGAGAGCGAAACCCTTGAGCACGCGTCGTTTCATACCCCCGTTCTCG
CAAAGTGATGCGCAAGCTTCGAGCGTGCTGCTGTGCTGTGTGTAAATGAA
CGTGTTCCGTTTTGGAGGGGGATGGCGCGGGGTCGTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig85:185472..189360-

>mRNA_P-littoralis_Contig85.43.1 ID=mRNA_P-littoralis_Contig85.43.1|Name=mRNA_P-littoralis_Contig85.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1413bp|location=Sequence derived from alignment at P-littoralis_Contig85:185472..189360- (Pylaiella littoralis U1_48)
ATGCCCAGGGAATGCGCTTCGTCCGGCTGTGTCAAGGACGCGAGGTTCGG
CGCGGAAGGGAGCGAAACGGTCAAGTTCTGCTCCCTGCATGCCAAGGATG
GAATGATCGATACCCGCTACAAGAGATGTGGACAAAAAGGGTGCAATAAG
TGGCCGTCGTATGGTGTGGAGGGGAGCAAAAAGGTCGAGTTCTGCTCTCA
GCATGCCAAGGAGGGAATGATCGACGTCCGCAACAAGAGGTGCGGACACC
AAGAGTGCACCAGGCATCCGTCGTACGGTGTGGCGGGAAGCAAAAGAGCC
GAGTACTGCGCTCAGCATGCCAAGGAGGGGATGATCAACATCATAAAGAA
GAAGTGCCGACAGAAAGGGTGTACAAAGTGGCCGACGTACGGTGTGGAGG
GAGGCAAGCAGACCGAGTTCTGTGCTCAGCATGCCAAGGATGAAATGGTT
CGCATCTGTAATAAGTGGTGCCGACACGAGGGGTGCACCAAAAGGCCGAC
GTACGGTGTGGAGGGGAGCAAACAGGCCGAGTTCTGTGTTGGGCATGCTA
CGGAGGGAATGGTCGACATATTCAACAAGAGGTGCAGACACGAGGGGTGC
ACAAAGGGTCCGACGTACGGTGTGGAGGGCAGCAAAAAGGCCGTGTTCTG
CGCTCAGCATGCCGAAGATGGAATGACCAGTATCCGCAAGAGGTGTGGAC
AGCAAGGGTGCTGCAAGCAGCCATCGTATGGTGTGGAGGGGAGCAAAAAT
AGGGAGTTCTGTGTTACGCATGCCAAAGATGGAATGGTTGACATCCTAAA
CAAGAGGTGCGGACACCAAGGGTGCACCAGGCAGCCGTCGTACGGTGTGG
AGGGGAGCAGAAAAAGAGAGTTCTGCTCTCAGCATGCCAAGGATGGAATG
ATCGACATCCGCTACAAGAGATGCGGACACGAAGGGTGCAGCGAGCAGCC
ATCGTACGGTGTGGAGGGAAGCAAAAAGGCCGAGTTCTGTGCTGAGCACG
CTAAGGACGGAATGAGCAACGTCCTCCGAAAGAGGTGCAGACACCAAGGG
TGCACCAGGCTTCCGTCGCACGGTGTGGAAGGGACCAAAAAGGTCGAGTT
CTGCTCTCAGCATGCGAAGGATGGAATGGTGAATAGGAGGCGGCACCGAG
CTTTCATCGGGAGCGCGAACAGCGGCCGACAAGGGCGTCATGGTGTAGGT
ATGCGTGACGTGACGCACCCTGGTGGCGCAGGTGAGACACATAATACCAG
AACCACCTCGTCTACGGAGAGCACGCGCGGTAATAAACGAGTCCGCCAGA
CCAGGGCCGCTTCAGCGGGTCCTGCGCCGGTCAAAGAAGAGACAATGGAA
ACTATAACGGCAGGCAGAGTTCATCCTTGGGGCCGGGACACTGTGCGGCA
AAGGCGGAAGTAA
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