mRNA_P-littoralis_Contig85.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig85.3.1
Unique NamemRNA_P-littoralis_Contig85.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig85.3.1 vs. uniprot
Match: D7FVD9_ECTSI (Similar to Serine/threonine-protein kinase Sgk3 (Serum/glucocorticoid-regulated kinase 3) (Serum/glucocorticoid-regulated kinase-like) isoform 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD9_ECTSI)

HSP 1 Score: 388 bits (997), Expect = 8.150e-129
Identity = 206/267 (77.15%), Postives = 221/267 (82.77%), Query Frame = 3 
Query:  351 GRSFRRTSTAA--AVPPRHRVRGLATPLPPAFPPLPREVAXXXXXXXXXXXXXXSHTSPEIGRSRVTATGLDVANELELSVPSHQEHLTADGQRYTTYEVMVRMGGRQWSVRKRYSQFDQFRMSLRRQHKEVGSFRFPNKSKFNTFSEHTKERRRTGFDEFLRLVANLHPRPEEVDVFLAMDEHGAGVRGRSGSRQLAWTSGKVPPLNVPNGPALGRVWSGNGRAEGGRRLATGAGAVRPPKGGAVHRIPRFPPLADQGRSEKAAEA 1145
            GRS RRTS+ +  A PP +R R +ATPLP AFPP                    + TSPEI +SRV+A GLDV +ELELSVPSHQEHLTADGQRYTTYEVMVRMGGRQWSVRKRYSQFDQFRMSLR+QHKEVGSFRFP+KSKFNTF+EHTKERRRTGFDEFLRLVANLHPRPEEVDVFLAMDEHGAGVRGR GSR LAWTS K  PLN P GPALGRVWSG+GR  GGRRLA+G+G VR PKGG  HRIPRFPPLADQGR+EKAAEA
Sbjct:   42 GRSARRTSSVSKTAGPPPYRSRSVATPLPAAFPPX-XXGRVAIANDGDGDEEPSNGTSPEIDQSRVSAQGLDVGHELELSVPSHQEHLTADGQRYTTYEVMVRMGGRQWSVRKRYSQFDQFRMSLRKQHKEVGSFRFPHKSKFNTFAEHTKERRRTGFDEFLRLVANLHPRPEEVDVFLAMDEHGAGVRGRPGSRPLAWTSTKTSPLNPPPGPALGRVWSGSGRTNGGRRLASGSGVVRNPKGGTAHRIPRFPPLADQGRNEKAAEA 307
[Close]
BLAST of mRNA_P-littoralis_Contig85.3.1 vs. uniprot
Match: A0A7S0XGX7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XGX7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.750e-16
Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = 3 
Query:  573 LELSVPSHQEHLTADGQRYTTYEVMVRM--GGRQWSVRKRYSQFDQFRMSLRRQHKEVGSFRFPNKSKFNTFSEHTKERRRTGFDEFLRLVANLHPRPEEVDVFLAMDEH 896
            L +SVPS +E + + GQ  T Y V +       ++S+ KRYS+F Q +  L+ ++ E+ SF+FPNKS FNT +  TKERRR GFD+FL+++    P P E + FL ++EH
Sbjct:    1 LLVSVPSFEEQIDSHGQPVTYYVVHIESTTSNLRYSLMKRYSKFAQLKNLLKEKYPEMESFKFPNKSVFNTQAYFTKERRRQGFDDFLKMLCKTIPMPIEFEEFLELNEH 110
[Close]
BLAST of mRNA_P-littoralis_Contig85.3.1 vs. uniprot
Match: A0A836CA34_9STRA (PX domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA34_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.840e-13
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 3 
Query:  681 KRYSQFDQFRMSLRRQHKEVGSFRFPNKSKFNTFSEHTKERRRTGFDEFLRLVANLHPRPEEVDVFL 881
            +RYS F+  R ++R  H+ V  F FP+KSKFNTF++ TKERRRTGF++F+ L+     RP EVD FL
Sbjct:    1 RRYSDFEALRDAVRSVHRCVSDFDFPHKSKFNTFADWTKERRRTGFEDFMMLLLGFTTRPAEVDAFL 67
[Close]
BLAST of mRNA_P-littoralis_Contig85.3.1 vs. uniprot
Match: A0A7S2CPX7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPX7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.510e-7
Identity = 38/115 (33.04%), Postives = 64/115 (55.65%), Query Frame = 3 
Query:  579 LSVPSHQEHLTADGQRYTTYEVMVRMG-GRQWSVRKRYSQFDQFRMSLRRQHKEVGSFRFPNKSKFNTFSEHTKERRRTGFDEFLRLVANLHPRPE---EVDVFLAMDEHGAGVR 911
            ++VP   E    DG R+T Y    +   G  W++ KRY+      + L   + ++  +RFP KS FNTF+E T+ERRR+GF++++ L+  ++   E   E+  FL + ++  G R
Sbjct:   15 ITVPKWIEIEKEDGTRHTIYIFKAQAADGTTWTLEKRYTDVFDMHIRLFDTNPQISGYRFPKKSVFNTFAEFTRERRRSGFEDYMGLLLTMNRVREVQRELFTFLEVAKYLIGER 129
[Close]
BLAST of mRNA_P-littoralis_Contig85.3.1 vs. uniprot
Match: A0A2T9YP72_9FUNG (PX domain-containing protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YP72_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 4.000e-5
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = 3 
Query:  567 NELELSVPSHQEHLTADGQ-RYTTYEVMVRMG-----GRQWSVRKRYSQFDQFRMSLRRQHKEVGSFRFPNKSKFNTFSEHTKERRRTGFDEFLRLVANLHP 854
            N LE+ V + Q H   DG+ +YT YE++ R        +  SVR+RYS+F+ FR +L+R+   V     P K   N FS+   E RR G + FL++VA  HP
Sbjct:   30 NSLEIEVVNPQTH--DDGKNKYTDYEIICRTNIPSFKFKNSSVRRRYSEFEWFRETLKREVAGVNIPNLPGKVLTNRFSDKVIEERREGLENFLQVVAG-HP 128
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FVD9_ECTSI8.150e-12977.15Similar to Serine/threonine-protein kinase Sgk3 (S... [more]
A0A7S0XGX7_9STRA1.750e-1643.64Hypothetical protein (Fragment) n=2 Tax=Chromulina... [more]
A0A836CA34_9STRA8.840e-1353.73PX domain-containing protein (Fragment) n=1 Tax=Tr... [more]
A0A7S2CPX7_9STRA6.510e-733.04Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2T9YP72_9FUNG4.000e-539.22PX domain-containing protein n=1 Tax=Smittium simu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig85contigP-littoralis_Contig85:12636..24639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008609944.1
PFAMsPX,Pkinase,Pkinase_C
Model size1587
Max annot lvl2759|Eukaryota
KEGG koko:K13303
KEGG Pathwayko04068,ko04151,map04068,map04151
Hectar predicted targeting categoryother localisation
Exons7
Evalue2.36e-08
EggNOG OGsKOG0598@1|root,KOG0598@2759|Eukaryota
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-14_000750.1
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size861
COG categoryH
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig85.3.1prot_P-littoralis_Contig85.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig85 12895..24172 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791714.555809-UTR-P-littoralis_Contig85:12635..128941680791714.555809-UTR-P-littoralis_Contig85:12635..12894Pylaiella littoralis U1_48UTRP-littoralis_Contig85 12636..12894 -
1680791714.6497412-UTR-P-littoralis_Contig85:24172..246391680791714.6497412-UTR-P-littoralis_Contig85:24172..24639Pylaiella littoralis U1_48UTRP-littoralis_Contig85 24173..24639 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791714.568845-CDS-P-littoralis_Contig85:12894..131041680791714.568845-CDS-P-littoralis_Contig85:12894..13104Pylaiella littoralis U1_48CDSP-littoralis_Contig85 12895..13104 -
1680791714.5791783-CDS-P-littoralis_Contig85:13989..141231680791714.5791783-CDS-P-littoralis_Contig85:13989..14123Pylaiella littoralis U1_48CDSP-littoralis_Contig85 13990..14123 -
1680791714.5927284-CDS-P-littoralis_Contig85:14505..146501680791714.5927284-CDS-P-littoralis_Contig85:14505..14650Pylaiella littoralis U1_48CDSP-littoralis_Contig85 14506..14650 -
1680791714.607671-CDS-P-littoralis_Contig85:14952..149941680791714.607671-CDS-P-littoralis_Contig85:14952..14994Pylaiella littoralis U1_48CDSP-littoralis_Contig85 14953..14994 -
1680791714.6176872-CDS-P-littoralis_Contig85:15329..154131680791714.6176872-CDS-P-littoralis_Contig85:15329..15413Pylaiella littoralis U1_48CDSP-littoralis_Contig85 15330..15413 -
1680791714.6295288-CDS-P-littoralis_Contig85:16085..161731680791714.6295288-CDS-P-littoralis_Contig85:16085..16173Pylaiella littoralis U1_48CDSP-littoralis_Contig85 16086..16173 -
1680791714.6394572-CDS-P-littoralis_Contig85:24014..241721680791714.6394572-CDS-P-littoralis_Contig85:24014..24172Pylaiella littoralis U1_48CDSP-littoralis_Contig85 24015..24172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig85.3.1

>prot_P-littoralis_Contig85.3.1 ID=prot_P-littoralis_Contig85.3.1|Name=mRNA_P-littoralis_Contig85.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=287bp
MGDGGDGASSTSSSHTSPEIGRSRVTATGLDVANELELSVPSHQEHLTAD
GQRYTTYEVMVRMGGRQWSVRKRYSQFDQFRMSLRRQHKEVGSFRFPNKS
KFNTFSEHTKERRRTGFDEFLRLVANLHPRPEEVDVFLAMDEHGAGVRGR
SGSRQLAWTSGKVPPLNVPNGPALGRVWSGNGRAEGGRRLATGAGAVRPP
KGGAVHRIPRFPPLADQGRSEKAAEAVAAAAEAAGTFSSTSVLSRVVRQV
KQASLWGTSRSEDLFDEEHKLEAYFRTIRVVVLDWG*
back to top

mRNA from alignment at P-littoralis_Contig85:12636..24639-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig85.3.1 ID=mRNA_P-littoralis_Contig85.3.1|Name=mRNA_P-littoralis_Contig85.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=12004bp|location=Sequence derived from alignment at P-littoralis_Contig85:12636..24639- (Pylaiella littoralis U1_48)
CTCGTTCTACGTAGGACTGCAGGGCTACAATGATGGATCATGAGGAGGAG
ACTGCAGGTGTAGAAGACAGCAGCGGGGAGGAATGTGCGGAAATGGGTAA
TGCGGTAGAACCTCTCTCATCAGGTCGTCCTTCAAGTCGTCACGATGGTC
ATGGTTGTGGTGGTCAGGATGTAGCTCCCTTGTTCATAGGAAGTGCCGGC
ATTGTGCGTCACTAGAAATAGCTCTTGTAAACGCGACAAGTAGGCAATGG
ATTTGCTGATAGTGTTCCATCTCCCGACCGAACCCTGCGATCGGCAGATT
CCGAAACATCTCCCAGAGACAGCAGCAGGCCCAGTTCTCGATCAACACCT
GGGCGGTCCTTTAGGAGAACATCAACAGCAGCAGCAGTGCCACCGCGGCA
CCGGGTTCGTGGTCTGGCGACCCCACTACCACCGGCCTTCCCTCCCCTTC
CAAGAGAAGTAGCCGAGATGGGAGATGGTGGTGATGGAGCTTCGAGCACA
TCGTCCAGTCACACGTCGCCAGAGATTGGTCGGTCACGAGTTACCGCCAC
GGGCCTCGATGTCGCCAATGAGCTAGAGCTGTCGGTTCCATCACATCAGG
AACATCTTACGGCGGACGGGCAAAGGTGAGACACGCGGTATCGTGTTACA
GTACAAACATGCCAGTGAAGAGGAGCGACAGCAGCGCCGGCGTGCATGAA
AAAACAATTATCTGAAGCGGTTCGGTACTGTTTGTCCAAGCAGTGAATTT
CGTAGAGCCGCAGCAAACTACTGTGACAGGAAATTGCTGTGCTGTACGTG
GTGGAACAGCGGCAGTGCGTGGGTACGCGGGCGAAGCAAGCGATCTACTG
TACCGGTTTACCGGTAGTCATAAAGCAACTCGACTTATAATTAGGACACC
AGACTACCTGTCTTTTTAAGTGTGTTACTCGTTCATGCGGCCCTCCCACT
CTATCATATCATACCAGTCCATCCATCTCAGTGTATTTTTTTAATTGGGT
AACGGGTTTATTTAGGCGGTTTCTTGTAGGGCCGGATTTTTTTTTCATTT
TTTGATAGAATCCGAATGAACTTTTTCCGGCCAACGGTTGCCCATCCGCT
GTTCTTATAGGTAAATGGGTGTTCGGATTTTCGGTGATGCTTTTTTTAAG
TAGCTGGTTGAAGAGTCGGCTCCAGAGTATATATCTGCATCGAAGGACCG
CAGGGTGGTGTTTTTTGCGCTGAAACCCGTTTGCATCGCCGCTCGTAACT
TTCGAACGAATTAAGACACAGCAATGACAAAGAAAGGCATCTTCCGTAAG
CTGTGTATATGATCCCCCTCGTGTCGTGATCGCTTGGGTTAGGGTTACAT
CCGTACATGTGCAACGTAGGTTTGCTCATGGCCAACTCATGCGAAACAAA
TTGAGAAAGATGTATCAGCCGGTCTGCTGTACAGCAGCATTGTTATATAC
TGCTGTATGTAATGTAGTTGTACAGCAATAGAGAAAGGAGATGACAGCTC
GGGTTCTTTTTTACAAGACAACAACATGCCACAGCCACGAGCGATGACCA
TTTTGCGAACATGCCAGTGTGATCCTCACCCAAACGATTACCACACGAGG
GGAGCCATACGCACAGCTCACGACAGATGGGTTTGTCATCGCTGTGGCTT
CATTCATTGGGGAGTTACGAACGAAGATGCAAACTGTGGCCTCCCTCAGA
GGAAGCTTTGATACTCCTCCTCCTGCTGCTGCTGTGCTGATGATGCTGCT
GCTACATACGGTTGGTTTTGGTTGCTGATGAGCACGATGGAATGGATGAT
GACACGGCAAGCGTACACAGAAAGGTGGTGGACACATGTATGGACAGCAG
CAAGCAGTAGTAGCAGCAGCAGCAGGAGCAGCAGCTGCAACAACACAGAA
AGTAGTTGCAGCAGCTCTCCTCCTCTCTCTGATGCTCTGTTGTGATTAAT
GTCGTTTGCTTTGTCCAAACACAAAGAGAGAGACAACTTCACACATTTAA
AAAAAAAAAAAAATCCGATCGTATTTTCCGAACTGATCCAGCGTTCGGAA
AATGTCCGATTTTCCGGCTGAAATCCGATTAAAAGCTGTTCGGAAAATGT
TGTTCGGAAAAAGGTGTTTTCCGAGCCTACAAGGCGGTTTCTTGCAGGGC
CGGATTTTTTATTCATTTTTTGATAGATTCCGATTTTTTTTTTAGATCAG
GCTTCTTTTAGGCTCGGAAAACCCCTTTTTTTCGAACAAAATTTTCCGAG
CAGCTTTTAATCGGATTTCAACCGGAAAATCGGACATTTTCCGAACGCTG
GATCAGTTCGGAAAATACGATCGGAAATTATATTAAAAAAAAATGTGTGA
AGTTATCTCTCTCTTTGTGTGTGGACAAAACAAACGATATTAATCACAAC
AGAGCATCAGAGAGAGGAGGAGAGCTGCTGCTACTACTTTCTGTGTTGTT
GCAGCTGCTGCTCCTGCTGCTGCTGCTGCTACTACTGCTTGCTGCTGTCC
ATACATGTGTCCACCATGTTTCTGCGTACGCTTGCCGTGTCATCATTCAT
ACCATCGTGTTCATCAGCAACCAAAACCAACCGTATGTAGCAGCAGCAGC
ATCAGCACAGCAGCAGCAGCAGGAGGAGGAGTATCAAAGCTTCCTCTGAG
AGAGGCCACAGTTTGCATCTTCGCTCGTAACTCCCCAATGAATGAAGCCA
CAGCGATGACAAACCCATCTGTCGTGAACTGTGCGTATGGCTCCCCTCGT
GTGGTAATCGTTTGGGTGAGGATCACACTGGCATGTTCGCAAAATGGTCA
TCGCTCGTGGCTGTGGCTTGTTGTTGTGTTGTAAAAAAGAACCCGAGCTG
TCATCTCCTTTCTCTATTGCTGTACAACTACAATACATACAGCAGTATAT
AACAATGCTGCTGTACAGCAGACCGGCTGATACATCTTTCTCAATTTGTT
TCGCATGAGTTGGCTATGAGCAAACCTAAGTTGCACATGTACGGATGTAA
CCCTAACCCAAGCGATCACGACACGAGGGGGATCATATACACAGCTCACG
GAAGATGCCTTTCTTTGTCATTGCTGTGTCTTAATTCGTTCGAAAGTTAC
GAGCGGCGATGAAAACGGGTTTCAGCGCAAAAAACACCACCCTGCGGTCC
TTCGATGCAGATATATACTCTGGAGCCGACTCTTCAACCAGCTACTTAAA
AAAAGCATCACCGAAAATCCGAACACCCATTTACCTATAAGAACAGCGGA
TGGGCAACCGTTGGCCGGAAAAAGTTCGTTCGGATTCTATCAAAAAATGA
AAAAAAAATCCGGCCCTACAAGAAACCGCCTAAAAAGCCTGATTTCGAAA
AAAAATCGGAATCTATCAAAAAATGAATAAAAAGTCCGGCCCTACGAGAA
ACCGCCTGAAAAGAGCAAAAATAATTGAGAATAACGAAAAAACTATGTTA
AAAAAGTCATTGGATCAAATTCAGGCATTAGACTACTTAAGCTGCAAAAA
CCCTCCTTAGAAAAGACCTTTTTTGATCTCGGGTGGTTTGACAACTTGTT
GTAGATGGAAAAACCCCCTTTTTTTATATCAACTTTTCTAATAACTTTTT
CCGATCGACCCAATCGCTCAGAAAAATCACTTTTTCCAAGCGATTCGATC
GATCAGAAAACGCTTATTGGAAAAGTTTGGGCCCTCCCTGACACAGCCTC
TCACGATTGGTCGGGTGACTTGAACAACTACAGTGGTATTATTTTTGCAA
GCCTATCGATACTTCGCGGCCCCAGATGACCTGTGGAGGAGAGGGACCAG
ACACACAGCTCAAGGGCGATTGCTTTGTTGTTTACTTTGTTGTTGCCGTG
GGTTCAATCGTTCGAGAGCAATGGACGGAACTCAAAAGTAGTGCGGGGTG
AGGGAGGAGAGCGGGCAGGAGGGAGCCGCAGCAAGCAGCAGCAGCAGGTA
TTTTGTATTTTGGGCCGCTCCATGGGTTTGGTTTTTCATTCATCACTCTC
GAACCAATTGAGCCACAGCAATGCCAAAGCCATCGCCCGTGAGCTATGCC
TCTGGTCCTTGTCCTCCGGTTGTCATCTAAGGCCGCAAGGCATCAACTGG
CTAGCAATAGAAGCGTTGCAGAAACCGACGAATTGTAAAAAATTGAACAG
AAAGAAAGGCCGTTTGGAGTCCAGCAAATACATACTGCTGTGTATATACT
CCTGTACAGCAGTACAGACAGACAGACGGCGGAGATTCTTCTCTTTTTTT
CACGAGTGATCGGTTTCTGCAAGAGCTAGATTGTTAGCCTATTGATGCCT
TGCGGCCCCAGATTACCAACGGAGGAGGGGGACAAGACACACAACTCACG
GTCGATGGCTTCGGTATTTCTGTGGCTCGATTGGTTCGATAGTTATGGAA
GAGAAACCAAACTGGTGTACCTGCGCAAAATACCTTGCTGCTTCCTGCTG
CTGCTGCGGACTTCGTTCTCTTTTCCTACTTTTTTTCACACGTCATCGAC
GCCTGCACTCTTTTTTTGTGAGCCTGTTGATGCCTCGCGGCCTCAAACGA
CAATCGGAGATGCACGACCATACACACAGCTTACGGGGCATGGCTTTGAT
ATTCCTGTGGCTTCATTCATTCGAAAGTAATCAACAAATACGTTACAGCA
GCAGCAGCAGCAGCCTATTGAAACGATGTCAACACCGTCTGTCAAAAAAA
AAAGGAGTCACCCATGGAAAAAATGAAATCAATCGCTGTTATAAGAAGCG
GTGCTTTTCGAAGATCCTGTTGGAATTCTTCTTATTGAAAAAGGCGGATT
GTAAGGATTTTTTTTTCAGCTATAATAAGTAGTATTTGACTGTTTCTTAT
TAGGTTGAAATTGCCGATCGATTTTGCCCTATATTCGATCGAGCATTTTT
GTGCTGAAGATGTTCGATCCTCTCTTCTTACGGTGATCGATTTTTCCGAC
AATTTTTTTAAGGACTGTCATCAAGAAGCAATAGTACAGCAGCAGTGAAG
CTTGTTTTTTCTCCTGCGAGACCAGCTTGTAATTAATTCTCAAATGAACG
AGGCCACAGCAATCTCAAAGCCATCTCCCCTGAGCTGTCTATGGTTCTTC
TCGTGTGGTGATCTTTCAAGCCCTGGAGGGTCGCTTAGGCTCGCAACAAG
GTTGATTGTTGATTTCACATGCGTCAAACATAAGCGAAAAAAGTACAAGG
AGGAATAGTCGCCGTTGCTCCGCGCAGCCGAGCAGGTCTTTTTCGCGTCT
GACACCGGTTTGCTTTTTCATCCACCGCTCCCGAACGGGTGCAGCCACAC
CAATGCCAAAGGCATCTGCCTTGAGCTGTGTGCATGGTCCCTGTCATCTG
GTGATCAATTAGGTTAGGGTTACATCGGTACGCCCGCAAAAAACAGTTTG
CTTGTCTCAAACCACATGCGGAAAAAAAGTTCAAGAAAGCCCTACCGGTC
AGTCAGTGCTGCTGTACAGCAGTACAAACGACAGAACAGCAGCAGCAGCA
GCTGCTTCCTCTTTTATCTTTCTGGTCGTTTCCAACACCATGTATGTGAT
TGTCACTACGAGCAAGCTTGTTTTCGAGCCTACCGATACCTCGCGGGCCC
GAACAATCATCACATGAGAGAGATCACGCACAAAGCTCACGGCAGATGCC
CGTGTCCAAGCTAGCTGTCGCTGCATTCGTTCGAGAGTAGTAGTGGTATA
GTGGTGGGTGAAAAAGCAAACCGGTGCCAGGGGAAAAGGACCAGCTGATC
CATGTAGTAAGATGTGAGGGCACACAAAAAACACAGACACCTGTGACACT
CGGCAAGTAGTGCTACATGGACAGCAGAGCCAAGCAGCAGCAGCAGTAGC
AGCACAGCAGTACCTCTCCTCCTGTGCTGTTGTTACTCTCCTTGCTTTGG
TTGGTGGCTCGGCGTGCTTGGTATGTGTAAATATATGCGCGTGTCGTGCG
TGTCGTGCGTGTGTGCGTGTGTGTGTGTTGTGTGTGTGCTGATGATAACC
CGCCACATGACTTTATCATACCACATAAAGAGAGAAGACTCAAGGACAAC
ATTTCCAAAAATCGATCGGTTGACCGCGTCGAAAATCCCTCAGATTTCCG
ACAGGATTCTGACCGAAAATGTCGGAAATCTCGGATCGAAAATGGGCTAT
TTTCGTCTCCGCAAGACATGAATTTTGGCTCTCGATCGAAAATAGGGCAA
AATCGATCGGCATTTTCAACCTTATAAGAAACGGTCTTAGTGTGTTTCCG
AAAAAAGAAATACGATTCAAATATCCTTTCTGAGGTTTCCCCGAGAGGCT
CCGTGATGGCAACGAAATACGGATTTTAAGCCAAATCAGCAAAATATCGC
CGAAGAAAGGATATTTGAGAAAGGATGTTTGATCTACCAAGTAGGTCATG
CCGCCTCGCAACGCGATTGGCCAAGTCTATCCGGCATCACCCGAGAGGTG
GCTGATAGCTGTGCCCTTCCTTTGCGAATCTAGGCAACCCTCGGGTGGAA
GAGCAGCGATTCGATCGATAAGAAAACAACGCTTATTAGAAAAGTTTGGG
CCCCCCTCATACAACAGCCTCTCACGATGAGTCGGGTGACTTGAACAACT
ACAGCAGTAGTGTTGTTTTTGCAAGCCTATCGATACCTCGCGGCCCCAGA
CGACCTACGGAGGAGAGGGACCAGACACACAGCTCAAGGGTGATCGCTTT
GTTGTTGCCGTGGGTTCCTTCTTTCGAGAGCAATGGACGAAAGTCAAAAG
TAGTGTGGGATGACGAAGAGCGGGCAGGGGAGGGAGCCGCAGCAATCAGC
AGCAGCAGCAGCAGCAGGTGTTTTGTATTTTGGGCCGCTACATGAGTTTG
GTTTCTCTTCCATCACTCTCGAACCAATTGAGCTACAGCAATACCAAAGC
CATCGCTCGTGAGCTATGCCTCTGGTCCTTGTCCTCCGTTTGTCATCTAA
GGCCACAACGCATCAACTGGCTAGCAATAGAAGCGTTGCAGAAACCGACG
AATTGTGAAAAAATTGAGAAGAAAGAAAAGCCGTTGAGGAGTCCAGCAAG
TACATACTGCTGTACAGCAGGACAGACAGACAGACGGCGGTGACTTCTTC
TCTTTTTTCACAAGTGATCGGTTTCTGCAACGGCTAGATTGCTAGCCTAT
TGATGCCTTGCGGCCCCAGATTACCAACGGAGGAGGGGGACAAGACACAC
AGCTCATGGCCGATGGCTTTGGTATTTCTGTGGCTCAATTGGTTCGATAG
TTATGGAAGAGAAACCAAACTGGTGTACCTGCGCAAAATACCTTGCTGCT
TCCTGCTGCTGCTACGGGCGTTCTTCTCTTTTCCTATTTTTTTTCACAAG
TCATCGACGCCTGCAATATTTATTGAGGAATGGCCAAAAACGGGTATACC
CGGTGGTTTTGTGGCCACTATCGGGTACCCTTCTTTTCCGCCGATAGAAA
TGGTCTCAGGGAGCGATTCCATTGGCCAAACCGCGCCGCCACCCGGTCCT
GGCCAGATTTCTGCCAGGTATACCCGGTTTTGGCTACTTTTTCCGCGGGA
GCTACCCGAGTTTCGCATACACTACCCGAAAGTGGCCCGACACACACTCT
ATAACTAAACTAGTTTCATGTTTACACTGCTGCTGGAGTTCATTGTGTAC
GTCATACTTCGTATCGTACATGCGTATGCGTATGCGTATGCGTATGATCA
TAGACGATGCCAGTCTCGCACGTAATACCCCTACTGTGCTACTCCTGTAG
CACCACCACTACTGCTGCCGACTGTCATAAGCGCTTGCGTGTGTGTGTGT
GCATCTGAGGAGTGCATGGATGTGTGTGTGGTGTGTGACAGAGGAGACAT
ATTACGAGATATGGCAGAGCACACAACAATATGATACGAAGTACATTTTG
AACTCTGTGATGATGGGGGGTATCCCCTCTTTCTATAATATTGATACCCC
ATAAAAGAAGTCTTTTTTCGCATACCTTTTCCAGAAATTCCTTTGTTTCG
GGGTTTGAAATCACCGGACTTTTTTTTTTTATTCAGAAAGGATATTTGCC
AAATCATGAAATATTCTTTTTTCGCACTCCATTATTTTTTGAAATAAATA
TTTTATTCTTTTGTGTTCGTTGCAATATCTGCTCTAGATCATTGGAGAGA
GGCGAAAACATTGATGTTTTTGCAAGTTAAAAAAACAAAAAAATGAAAAC
CTATGACAATCTTATTTTTAAAAAACAAAACGGAGTACGATAAATATAAA
ACATATTAAGAGCCCAACAAGATTTTCTTACACTTACTCTCTGTTGTACA
GCAGATATAGTATGACACTGCATCCAAAACGACCAAACAGGTCGCCGACT
CTGAACGGACGCCGTCGACGATTAGATGGTTTCGAAGCACATTGTATTTT
GCGTATTTTGCGTAAGATACACACGAAGTAAAATTGGCACACACGCTTGT
TGTTGAATTGTTCCAGGTACACAACGTACGAGGTGATGGTGCGCATGGGA
GGGCGGCAGTGGAGCGTGCGGAAACGTTACTCGCAATTCGATCAGTTCCG
GATGGTACGTGCTGAAAGTCATAAACAAGTTGTTGCGATCGCCGTCCCTC
CCGCGACCATTTCACTTTCTGGTGGCTCAACACAGCAGTATGCTCTTCGG
GTACAACGAGATCACGCCAGTGTTTTTGATTTTGGTCACTGTTTTTAGAG
TCCTTCGAAGTAAAATTGCGTACCACAGTACTGGAGTTTTTCTCGCTTAA
CGCTAGACCTACGGCAACCAAACATGCAGGGGTCCGACACGAGGTCGCAT
ATTAGCTTCCTTCGCCAGTTCTGCCTTGGTTTTAATGTGTGTCGGGTTCA
GCCTGCCTGTTCGCTCGTCGACCTGCATCGATTTTCATGTACACATGCTA
CTCTCGTTTTGCTGGCTGCTCCCCTCTAAAGAAAGCAAATATTTAATTGT
CGACACCGGACTCACACTTGAGACATCACCGCCGAAGACTACACGGGAAC
GATACTTGTATAAGTGGCATTTTTTAGGTGCAAACCGGTCACGCCCAGCA
GCACAGAATAATTTGACTGCAAACCGGATTGCGCGTAGTTTGATAGATCG
GTCGTGGCAAACCTCAACTAAGTCACAACAGGAAGTTTTCGTTTTTATGT
GAGCGATCGCATTGCCTCTGTTCGCACTCCCGTTCTCGTGTACGCTATTT
TACGCCCGGGTGCACGCGTTCCGCAGTCGCTTCGAAGACAGCACAAGGAG
GTAGGCTCGTTCCGCTTCCCGAACAAATCCAAGTTCAACACTTTTTCCGA
ACACACCAAGGTGAGATCCGTTACAAGATCGGCGAATTGTGCCCCCTCAG
ATGAAGATGCAGGACCAGAAACTCGCAACCCGCGTTCGAAATGCTCCCAC
GCCCTAAACCCCTCAGGCTAGACGGTTGTGCTTTCCACCCCTCAATTCCA
CTTGGTACGCTTTGGGTGTTTCTGTCGTAGTTTCTCGCCCGTCGCATGAC
ACAGTTTGGGTAATCTCTCGGAGTGCTCGTGCGTCGATTGATTACCGCCG
CCCCCGCCCGTCTCTCCTCCCGCCTAGAGACTTTCTCACGCGACGCACTT
GTATGTCCCACGTGATTTTTTTGTTTGTGCCTTATGTTTTACCAGGAACG
GCGAAGGACAGGCTTCGATGAATTTCTTAGACTTGTGGTGAGTTGCTACT
ATTTGATGGGTAGGTGAAACCTCAAGCAGACTCGAACGAATGCAAGCTCG
TAAGAAAACCCTTTTTTTCGCGCCATAACGTCGATTTGAAGTGCTGCACC
TGCATTTATGCTTTGGTACCATAGTTTGGAATGGCACCACTACCAATACA
AGGCTTGATACGAGCGGCATCACCTAGCGCCTGCACTTCGAAACCGCTGA
CTTTTGCGCTACGGCAGTATGTCTACCCACTGATGTAGCAGAGCTTCAAC
ACCAAAGGCAATGGCCTCCTTTTTTGCCGGTTCCAAAAGGCCAATCTGCA
CCCCCGGCCTGAAGAGGTGGATGTGTTTTTGGCGATGGACGAGCATGGAG
CGGGCGTACGTGGGCGGTCGGGAAGTCGACAACTTGCCTGGACAAGTGGG
AAGGTCCCCCCATTGAATGTGCCGAACGGCCCCGGTGAGAAAATGAAGGG
TTGCGTCTCTACGTTTACTTGGCTGTCACCCATGCAGATGAGGCCGTACT
CAAGGAAGCAGGCCATCGCCTTGTGAAGCCCTGAACCAACCACCAATGCC
TGAAATTTGGCCTTTTCTTTGATGCCGTGACATGAAGCGGGTGTGCTCGC
GTGAACGCAAATGATGGATGCGGTGGCACAATCAAACGTTGCACTGCCGT
CCACACAGCTAGTAGGCTTAGGGTTTCGTCGATCGTCCATCTGGCGGTAC
AGCACGGAACCATACTGGCCCACGAATCTTCAACTTAGCTGACCTGTATA
CCCAAACGTTGTCGGTTCGTGCCGAAAAAAACTGAACGTTTCTGTGCCTT
CTCGTTCGAAGTGCAGCTCTTGGACGAGTATGGTCGGGAAACGGACGTGC
GGAAGGCGGTCGGCGGCTGGCGACGGGTGCGGGTGCCGTCCGACCACCCA
AGGGAGGAGCTGTACACCGTATCCCGCGGTTTCCACCACTTGCCGATCAG
GTACTATTTTCGGGGAGAGGCTTCTACCGTAAGTGCATAAGATATCATAC
CGGTGTGGTAACATTTCTGTGTTTCAAAACAATTTCACACCGGCGTAGTA
CTGTGTAATTTTGACTCGGGGTTGTGGTATCTTCTGTCACCCTTTTTACT
GACTTGAGACATGCTGGCGCCTTTTTCGGGATTGAAAAAAATAGCACACG
AGTGTGGTATAGCGTATCTTTTCGTACGGAGTGTAGTATCTTATGAAAGT
GTGAGATCTTAAGCAACCTACGTTACACAGCACACCGAAGAGTTGTTATC
TGTCGACCCTTTCACTAACCAGGAAATCTAGTTTGCACTTGTATCTGTGT
TGTGCCGCTGCGATGGAGGATATAAGGCGGTGATCCGAATCATGCTTTCC
GAATCATGCTTGGAGCCGGCCTGGGTAGCCTTTGGATAAGGCATGATTTA
ATTAGGGGTTTGCGGTGTTGGACACCCTCCACACGGAGTAAGTGCTTGTG
CGCGGAGTCGCAGTGCGCTCTTTATATCACCGTATCATGTTGTGCAAATC
TTTGTCGAAAATTATCTGCGGTCGACGGGGGGGAGGGGCGGGGGAAGGGG
GGGCTGAGAATGTTTCTAGCATCCGGCAATTTTATTTTTAATATATTTTG
TGCTGTTGTCCGTTTGATCTACCTTCCTCTGCCATGCCCGACGGAACCAA
TGTACATCTCGAGCTGTCCTTCCTGAGATCTAGGTACACGATAGCGAATC
ACGGCGCATAGCAGCGTGCGAATTGCGACCAGTAACGACCCCCGCAGTAG
CTGGCGCTGCTCAGCGAATACCGCTTTCATGTGTGATGCAATGTTTCTCG
ACGTGCCGACTGCGCGTCAAACTTAATGTTGTCAGGGACGGAGTGAAAAG
GCCGCGGAGGCAGTGGCGGCGGCAGCAGAAGCGGCAGGAACTTTTTCATC
GACAAGCGTTCTGTCGAGAGTCGTGCGTCAGGTAAAGCAGGCATCACTCT
GGGGTACCTCAAGGTCAGAAGATTTGTTCGATGAGGAACATAAACTAGAG
GCTTATTTCCGAACCATCCGTGTTGTCGTCCTGGACTGGGGCTAGACACT
TTTTTTAATACAAACAGCATGTCCCTAGAGCGATCTCTTGAAATCAATCG
TGAAAAGGTCACAAACATCGCGTTGGTGTGGGAGAAAGCCGCCTTGCCGA
TGTTGTGGTTGGCACCCATAAAAAGCTGGCGAAGAGATTTTCCACAACTT
TTCCCCGCTCCCCCTCTCTTTTTCAATCACTCCTTTGTTTTCATGACGTT
ACTAGACGGACCTGTTACTGCGAAGGCTACTCGGACCGGACCTGTTGAGC
ATGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig85:12636..24639-

>mRNA_P-littoralis_Contig85.3.1 ID=mRNA_P-littoralis_Contig85.3.1|Name=mRNA_P-littoralis_Contig85.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=861bp|location=Sequence derived from alignment at P-littoralis_Contig85:12636..24639- (Pylaiella littoralis U1_48)
ATGGGAGATGGTGGTGATGGAGCTTCGAGCACATCGTCCAGTCACACGTC
GCCAGAGATTGGTCGGTCACGAGTTACCGCCACGGGCCTCGATGTCGCCA
ATGAGCTAGAGCTGTCGGTTCCATCACATCAGGAACATCTTACGGCGGAC
GGGCAAAGGTACACAACGTACGAGGTGATGGTGCGCATGGGAGGGCGGCA
GTGGAGCGTGCGGAAACGTTACTCGCAATTCGATCAGTTCCGGATGTCGC
TTCGAAGACAGCACAAGGAGGTAGGCTCGTTCCGCTTCCCGAACAAATCC
AAGTTCAACACTTTTTCCGAACACACCAAGGAACGGCGAAGGACAGGCTT
CGATGAATTTCTTAGACTTGTGGCCAATCTGCACCCCCGGCCTGAAGAGG
TGGATGTGTTTTTGGCGATGGACGAGCATGGAGCGGGCGTACGTGGGCGG
TCGGGAAGTCGACAACTTGCCTGGACAAGTGGGAAGGTCCCCCCATTGAA
TGTGCCGAACGGCCCCGCTCTTGGACGAGTATGGTCGGGAAACGGACGTG
CGGAAGGCGGTCGGCGGCTGGCGACGGGTGCGGGTGCCGTCCGACCACCC
AAGGGAGGAGCTGTACACCGTATCCCGCGGTTTCCACCACTTGCCGATCA
GGGACGGAGTGAAAAGGCCGCGGAGGCAGTGGCGGCGGCAGCAGAAGCGG
CAGGAACTTTTTCATCGACAAGCGTTCTGTCGAGAGTCGTGCGTCAGGTA
AAGCAGGCATCACTCTGGGGTACCTCAAGGTCAGAAGATTTGTTCGATGA
GGAACATAAACTAGAGGCTTATTTCCGAACCATCCGTGTTGTCGTCCTGG
ACTGGGGCTAG
back to top