mRNA_P-littoralis_Contig85.107.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig85.107.1
Unique NamemRNA_P-littoralis_Contig85.107.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig85.107.1 vs. uniprot
Match: D7FTS9_ECTSI (Endonuclease III homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS9_ECTSI)

HSP 1 Score: 466 bits (1198), Expect = 2.060e-159
Identity = 224/257 (87.16%), Postives = 245/257 (95.33%), Query Frame = 1 
Query:   85 KNTRKPIPTDPPQRDWRQQMEGVRSMRRSRDAAVDSAGAGALKDSSTGSDDDVRFQVLMSAMLSSQTKDPVTAAAVNRMREACAPAPLGAAALLATGMDEEVLTELLHPVSFKKTKAKHILMVCERLAKAEDGRGAGAIPDTVEGLLDLPGVGPKMTYLVLDIAWGKVEGICVDTHVHRISNRLGWVDTWNRDKPKAQNPDKTRKHLQGWLPREHWSEVNELLVGFGQQVCFAVNPSCSACGISGICPSAERHGDLS 855
            K TR PIPT+PPQ  WR+QMEG+RS+RRSRDAAVD AGAGAL+DSS GS+DDVRFQVLMSAMLSSQTKDPVTAA +NRMR+ACAPAPLGAAALLATGMDE+ LTELLHPVSFKKTKAKHILMVC+RLA+AEDGR AGAIPDTVEGLL+LPGVGPKMTYLV+D+AWG+ EGICVDTHVHRISNRLGWVDTWNR++PKAQNP+KTRKHLQGWLPREHWSEVNELLVGFGQQVCFA  PSCSACGISG+CPSA+RHGDL+
Sbjct:   28 KTTRIPIPTEPPQEKWREQMEGIRSVRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKAKHILMVCKRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATRPSCSACGISGLCPSADRHGDLA 284
[Close]
BLAST of mRNA_P-littoralis_Contig85.107.1 vs. uniprot
Match: A0A5D6Y8M4_9STRA (Endonuclease III homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8M4_9STRA)

HSP 1 Score: 242 bits (618), Expect = 8.590e-72
Identity = 127/238 (53.36%), Postives = 155/238 (65.13%), Query Frame = 1 
Query:  127 DWRQQMEGVRSMRRSRDAAVDSAGAGALKDSSTGSDDDVRFQVLMSAMLSSQTKDPVTAAAVNRMREACAPAPLGAAALLATGMDEEVLTELLHPVSFKKTKAKHILMVCERLAKAEDGRGAGAIPDTVEGLLDLPGVGPKMTYLVLDIAWGKVEGICVDTHVHRISNRLGWVDTWNRDKPKAQNPDKTRKHLQGWLPREHWSEVNELLVGFGQQVCFAVNPSCSACGISGICPSAER 840
            +W+Q +EG+++MR +  A VDS G    K  +  + +  RF  L+SAMLSSQTKDPV AAA+ R+        L   A+L   +DE  L + +HPV F + KAK+I  V   L     G     IPDT EGLL LPGVGPKM YLV+D AW  V GICVDTHVHRISNRLGWV TWN+  PKAQ+P+KTR+ LQ WLPREHW  +N LLVGFGQ +C    P C  C I+ +CPSA R
Sbjct:   89 NWKQMLEGIQTMRAAGGAEVDSMGCEIYKKDTVPAHE-WRFHTLVSAMLSSQTKDPVNAAAMERLM--ARDGGLTVQAMLV--IDESELAQTIHPVGFYRNKAKYIKQVASILTARASGAAVVDIPDTFEGLLALPGVGPKMAYLVMDCAWSNVAGICVDTHVHRISNRLGWVTTWNKKNPKAQDPEKTRRELQDWLPREHWGPLNLLLVGFGQTICQPRAPKCDECSITHLCPSAHR 321
[Close]
BLAST of mRNA_P-littoralis_Contig85.107.1 vs. uniprot
Match: K3WGH9_GLOUD (Endonuclease III homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGH9_GLOUD)

HSP 1 Score: 240 bits (612), Expect = 2.170e-71
Identity = 128/246 (52.03%), Postives = 155/246 (63.01%), Query Frame = 1 
Query:  124 RDWRQQMEGVRSMRRSRDAAVDSAGAGALKDSSTGSDDDV-----RFQVLMSAMLSSQTKDPVTAAAVNRM--REACAPAPLGAAALLATGMDEEVLTELLHPVSFKKTKAKHILMVCERLAKAEDGRGAGAIPDTVEGLLDLPGVGPKMTYLVLDIAWGKVEGICVDTHVHRISNRLGWVDTWNRDKPKAQNPDKTRKHLQGWLPREHWSEVNELLVGFGQQVCFAVNPSCSACGISGICPSAER 840
            + W+  + G++ MR  RDA VD+ G        T  DD V     RF  L+SAMLSSQTKDPV AAA+ R+  RE       G        +DE  L +++HPV F + KAK+I  V E L K   G     IP T E L+ LPGVGPKM YLV+D AW  V GICVDTHVHRISNRLGWV+TWN+  PKAQ+P+KTR  LQ WLP+EHW  +N LLVGFGQ +C   NP C+ C IS +CPSA +
Sbjct:   52 KQWKDMLLGIQEMRAKRDADVDTMGC------ETHVDDKVAPHVWRFHTLVSAMLSSQTKDPVNAAAMERLIGREG------GLTVQTMRDIDENELAQIIHPVGFYRNKAKYIKQVAEILTKQAAGSDVVDIPSTFEDLVALPGVGPKMAYLVMDCAWNNVVGICVDTHVHRISNRLGWVNTWNKKNPKAQDPEKTRAELQDWLPQEHWGPINVLLVGFGQTICQPRNPKCTECKISHLCPSANK 285
[Close]
BLAST of mRNA_P-littoralis_Contig85.107.1 vs. uniprot
Match: F0X2C6_9STRA (Endonuclease III homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X2C6_9STRA)

HSP 1 Score: 229 bits (585), Expect = 5.410e-67
Identity = 118/242 (48.76%), Postives = 157/242 (64.88%), Query Frame = 1 
Query:  118 PQRDWRQQMEGVRSMRRSRDAAVDSAGAGALKDSSTGSDDDVRFQVLMSAMLSSQTKDPVTAAAVNRMREACAPAPLGAAALLATGMDEEVLTELLHPVSFKKTKAKHILMVCERLAKAEDGRGAGAIPDTVEGLLDLPGVGPKMTYLVLDIAWGKVEGICVDTHVHRISNRLGWVDTWNRDKPKAQNPDKTRKHLQGWLPREHWSEVNELLVGFGQQVCFAVNPSCSACGISGICPSAERH 843
            P  +W + +  +R MR +  A VD  G+    D+   +    RF VL+SAMLSSQTKDP+ AAA+ R+ +      L   +++   + E+ L ++++PVSF + KAK I  V   L + E   G   IP+TVE L+ LPGVGPKM YLV+++AW K  GICVDTHVHRI NRLGWV TWN+  PKAQ+P+KTRK L+ WLP EHW  +N+LLVGFGQ +C A  P C  C +  ICPSA ++
Sbjct:   82 PNVNWNEMLLKIREMRATMKAEVDEDGSETFYDTKHPAHV-ARFHVLISAMLSSQTKDPINAAAMRRLLDN----ELTVESMIK--IKEDKLAQIIYPVSFYRNKAKSIKKVASILKERESEDGICDIPETVENLVALPGVGPKMAYLVMNVAWNKPVGICVDTHVHRICNRLGWVSTWNKKNPKAQDPEKTRKELEAWLPSEHWDSINQLLVGFGQTICHARQPKCKDCALQSICPSASKN 316
[Close]
BLAST of mRNA_P-littoralis_Contig85.107.1 vs. uniprot
Match: H3G4Y0_PHYRM (Endonuclease III homolog n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G4Y0_PHYRM)

HSP 1 Score: 227 bits (578), Expect = 6.050e-67
Identity = 122/249 (49.00%), Postives = 157/249 (63.05%), Query Frame = 1 
Query:   94 RKPIPTDPPQRDWRQQMEGVRSMRRSRDAAVDSAGAGALKDSSTGSDDDVRFQVLMSAMLSSQTKDPVTAAAVNRMREACAPAPLGAAALLATGMDEEVLTELLHPVSFKKTKAKHILMVCERLAK-AE-DGRGAGAIPDTVEGLLDLPGVGPKMTYLVLDIAWGKVEGICVDTHVHRISNRLGWVDTWNRDKPKAQNPDKTRKHLQGWLPREHWSEVNELLVGFGQQVCFAVNPSCSACGISGICPSA 834
            +K +P   P  +W++ + G+  MR ++DA VD  G     D S    +  RF VL++AM+SSQTKDPV AAA+ R+ +       G        +D++ L +L+ PV F   KAK+I      L K AE DG+    IPDT EGL+ LPGVGPKM  LV++ AW    GICVDTHVHRISNRL WV TWN++ PK+QNP+KTR  L+ WLP+EHW  +N LLVGFGQ +C    P CS C I G+CPSA
Sbjct:    6 KKRVPRQEPS-NWKEILRGIEEMRANKDAEVDKYGCEVFFDESFPPQE-CRFHVLIAAMMSSQTKDPVNAAAMGRLIKH------GLTVESMLEIDQQELAQLIRPVGFFNHKAKYIKQTVAILRKQAEADGKDVVEIPDTYEGLIGLPGVGPKMATLVMNCAWNNAVGICVDTHVHRISNRLKWVKTWNKNNPKSQNPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPKCSECKIRGVCPSA 246
[Close]
BLAST of mRNA_P-littoralis_Contig85.107.1 vs. uniprot
Match: A0A6A3KHN9_9STRA (Endonuclease III homolog n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KHN9_9STRA)

HSP 1 Score: 224 bits (570), Expect = 8.170e-65
Identity = 119/239 (49.79%), Postives = 152/239 (63.60%), Query Frame = 1 
Query:  127 DWRQQMEGVRSMRRSRDAAVDSAGAGALKDSSTGSDDDVRFQVLMSAMLSSQTKDPVTAAAVNRMREACAPAPLGAAALLATGMDEEVLTELLHPVSFKKTKAKHILMVCERLAKAED--GRGAGAIPDTVEGLLDLPGVGPKMTYLVLDIAWGKVEGICVDTHVHRISNRLGWVDTWNRDKPKAQNPDKTRKHLQGWLPREHWSEVNELLVGFGQQVCFAVNPSCSACGISGICPSAE 837
            +WR+ ++G+  MR ++DA VD  G     D S       RF VL++AM+SSQTKDPV AAA+ R+ +       G        +D++ L +L+ PV F   KAK+I    E L K  +  GR    IP+T EGL+ LPGVGPKM+ LVL+ AW    GICVDTHVHRISNRL WV TWN++ PK+QNP+KTR  L+ WLP+EHW  +N LLVGFGQ +C    P C+ C I GICPSA 
Sbjct:   82 NWREILKGIEEMRANKDAEVDKYGCEVFFDKSFPPHV-CRFHVLIAAMMSSQTKDPVNAAAMGRLIKH------GLTIESMLEIDQQELAQLIRPVGFFNHKAKYIKQTAEILTKQAEVEGRDIVDIPNTYEGLVALPGVGPKMSTLVLNCAWNNTVGICVDTHVHRISNRLKWVKTWNKNNPKSQNPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPRCNECKIRGICPSAN 313
[Close]
BLAST of mRNA_P-littoralis_Contig85.107.1 vs. uniprot
Match: A0A3F2RMS3_9STRA (Endonuclease III homolog n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RMS3_9STRA)

HSP 1 Score: 223 bits (569), Expect = 9.020e-65
Identity = 124/267 (46.44%), Postives = 162/267 (60.67%), Query Frame = 1 
Query:   37 TARGDIPASTSPVTVWKNTRKPIPTDPPQRDWRQQMEGVRSMRRSRDAAVDSAGAGALKDSSTGSDDDVRFQVLMSAMLSSQTKDPVTAAAVNRMREACAPAPLGAAALLATGMDEEVLTELLHPVSFKKTKAKHILMVCERLAKAEDGRGAGAIPDTVEGLLDLPGVGPKMTYLVLDIAWGKVEGICVDTHVHRISNRLGWVDTWNRDKPKAQNPDKTRKHLQGWLPREHWSEVNELLVGFGQQVCFAVNPSCSACGISGICPSAE 837
            T +GD P   +     K T+  +P   P   W++ + G+  MR S+DA VD  G     D    +    RF VL++AM+SSQTKDPV AAA+ R+        L   ++LA  +D++ L  L+ PV F   KAK+I      L K  +G     IP+T EGL+ LPGVGPKM  LV++ AW    GICVDTHVHRI+NRL WV TWN++ PK+Q+P+KTR  L+ WLP+EHW  +N LLVGFGQ +C    P CS C I GICPSA+
Sbjct:   52 TVQGDAPKKKA-----KKTKTRVPRKEPS-GWKELLRGIEEMRASKDAEVDKYGCEVFYDEKFPAHVR-RFHVLIAAMMSSQTKDPVNAAAMGRLINH----GLTMESMLA--IDQQELALLIRPVGFFNYKAKYIKQTVAILTKQAEGANIVDIPNTYEGLIALPGVGPKMATLVMNCAWDNTVGICVDTHVHRIANRLKWVKTWNKNNPKSQDPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPKCSECKIQGICPSAK 305
[Close]
BLAST of mRNA_P-littoralis_Contig85.107.1 vs. uniprot
Match: A0A067D6V1_SAPPC (Endonuclease III homolog n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D6V1_SAPPC)

HSP 1 Score: 217 bits (552), Expect = 7.890e-63
Identity = 117/238 (49.16%), Postives = 153/238 (64.29%), Query Frame = 1 
Query:  127 DWRQQMEGVRSMRRSRDAAVDSAGAGALKDSSTGSDDDVRFQVLMSAMLSSQTKDPVTAAAVNRMREACAPAPLGAAALLATGMDEEVLTELLHPVSFKKTKAKHILMVCERLAKAEDGRGAGAIPDTVEGLLDLPGVGPKMTYLVLDIAWGKVEGICVDTHVHRISNRLGWVDTWNRDKPKAQNPDKTRKHLQGWLPREHWSEVNELLVGFGQQVCFAVNPSCSACGISGICPSAER 840
            +W Q  +G+  MR  R AAVD+ G  +  D S       RF VL+++MLSSQTKDPVTAAA+ R+++      L  A +LAT  +E  L ++L PV F   KA ++   C  L +    + A  IP T + L+ LPGVGPKM +L +  AW K  GICVD HVHRISNRLGWV TWN+  PK+Q+P+KTRK L+ WLP E W+ VN LLVGFGQ+VC  +NP C  C ++ +CPSA +
Sbjct:   37 NWEQVWDGITFMRAERTAAVDNQGCESFNDPSLAPPLR-RFHVLVASMLSSQTKDPVTAAAMERLKKH----GLTVANILATDRNE--LAQILRPVGFFNNKATYLHKTCAILQE----KYASDIPPTFDELMALPGVGPKMAHLTMSAAWEKTVGICVDVHVHRISNRLGWVKTWNKQNPKSQDPEKTRKELEDWLPYEKWNPVNALLVGFGQEVCHPLNPRCDVCTVAHLCPSAFK 263
[Close]
BLAST of mRNA_P-littoralis_Contig85.107.1 vs. uniprot
Match: A0A329RX62_9STRA (Endonuclease III homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RX62_9STRA)

HSP 1 Score: 218 bits (556), Expect = 9.260e-63
Identity = 116/236 (49.15%), Postives = 146/236 (61.86%), Query Frame = 1 
Query:  130 WRQQMEGVRSMRRSRDAAVDSAGAGALKDSSTGSDDDVRFQVLMSAMLSSQTKDPVTAAAVNRMREACAPAPLGAAALLATGMDEEVLTELLHPVSFKKTKAKHILMVCERLAKAEDGRGAGAIPDTVEGLLDLPGVGPKMTYLVLDIAWGKVEGICVDTHVHRISNRLGWVDTWNRDKPKAQNPDKTRKHLQGWLPREHWSEVNELLVGFGQQVCFAVNPSCSACGISGICPSAE 837
            W+  + G+  MR + DA VD  G     D S       RF VL++AM+SSQTKDPV AAA+ R+ +      L   ++L   + E  L +L+ PV F   KAK+I      L K  +G+    IP T EGL+ LPGVGPKM  LV++ AW    GICVDTHVHRISNRL WV TWN++ PK+Q+P+KTR  L+ WLP+EHW  +N LLVGFGQ +C    P CS C I GICPSA 
Sbjct:   85 WKDILHGIEQMRATMDAQVDKYGCEVFFDESFPPHV-CRFHVLIAAMMSSQTKDPVNAAAMGRLIKH----GLTVESMLEINLQE--LAQLIRPVGFFNHKAKYIKQTASILTKQAEGKDVVDIPSTYEGLIALPGVGPKMATLVMNCAWKNTVGICVDTHVHRISNRLKWVKTWNKNNPKSQDPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPKCSECKIRGICPSAN 313
[Close]
BLAST of mRNA_P-littoralis_Contig85.107.1 vs. uniprot
Match: A0A516AG77_LINPO (Endonuclease III-like protein 1 (Fragment) n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AG77_LINPO)

HSP 1 Score: 218 bits (555), Expect = 2.010e-62
Identity = 127/281 (45.20%), Postives = 167/281 (59.43%), Query Frame = 1 
Query:   34 STARGDIPAS----TSPVTVWKNTRKPIPTDPPQRDWRQQMEGVRSMRRSRDAAVDSAGAGALKDSSTGS----DDDVRFQVLMSAMLSSQTKDPVTAAAVNRMREACAPAPLGAAALLATGMDEEVLTELLHPVSFKKTKAKHILMVCERLAKAEDGRGAGAIPDTVEGLLDLPGVGPKMTYLVLDIAWGKVEGICVDTHVHRISNRLGWVDTWNRD------KPKAQNPDKTRKHLQGWLPREHWSEVNELLVGFGQQVCFAVNPSCSACGISGICPSA 834
            ++AR  +PAS      P   W     P P      DW++Q+ G+ +MRR+RDA VD +G  ++   S  S    +  +RF+ LM AMLSSQT+DPVT AAV R+  A A     A   L   + E  L  LL PVSF   KAK++    E+L      R  G +P + +  L+LPGVGPKM  L++ + WG+V GICVDTHVHRI+NRLGW  TW+        +P +Q P++TR  L+ WLPRE W  +N LLVGFGQQ C A+ P+CS C I G+CPSA
Sbjct:   43 ASARQQLPASGLTALEPQMGWAEVASPQP------DWQEQLAGIIAMRRARDAPVDWSGTESIAARSGPSGGLQEQRMRFRALMGAMLSSQTRDPVTYAAVERLEVATARHGGLAPTSLLEALTEPDLAALLKPVSFAARKAKYLRGAAEQLL----ARHGGDVPRSADEFLELPGVGPKMMTLLMQVCWGQVVGICVDTHVHRIANRLGWARTWSHGASPRTGRPASQRPERTRVELERWLPRELWQPINPLLVGFGQQRCTALRPACSGCSIRGLCPSA 313
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTS9_ECTSI2.060e-15987.16Endonuclease III homolog n=1 Tax=Ectocarpus silicu... [more]
A0A5D6Y8M4_9STRA8.590e-7253.36Endonuclease III homolog n=1 Tax=Pythium brassicum... [more]
K3WGH9_GLOUD2.170e-7152.03Endonuclease III homolog n=1 Tax=Globisporangium u... [more]
F0X2C6_9STRA5.410e-6748.76Endonuclease III homolog n=1 Tax=Albugo laibachii ... [more]
H3G4Y0_PHYRM6.050e-6749.00Endonuclease III homolog n=1 Tax=Phytophthora ramo... [more]
A0A6A3KHN9_9STRA8.170e-6549.79Endonuclease III homolog n=4 Tax=Phytophthora TaxI... [more]
A0A3F2RMS3_9STRA9.020e-6546.44Endonuclease III homolog n=2 Tax=Phytophthora kern... [more]
A0A067D6V1_SAPPC7.890e-6349.16Endonuclease III homolog n=1 Tax=Saprolegnia paras... [more]
A0A329RX62_9STRA9.260e-6349.15Endonuclease III homolog n=2 Tax=Phytophthora TaxI... [more]
A0A516AG77_LINPO2.010e-6245.20Endonuclease III-like protein 1 (Fragment) n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig85contigP-littoralis_Contig85:419909..426999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FTS9
Preferred nameNTH1
PFAMsHhH-GPD
Model size1742
Max annot lvl2759|Eukaryota
KEGG koko:K10773
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
GOsGO:0000702,GO:0000703,GO:0003674,GO:0003824,GO:0003906,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005911,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006289,GO:0006296,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009295,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0012505,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0016787,GO:0016798,GO:0016799,GO:0018022,GO:0018193,GO:0018205,GO:0019104,GO:0019538,GO:0030054,GO:0032259,GO:0033554,GO:0033683,GO:0034641,GO:0036211,GO:0042644,GO:0042646,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055044,GO:0071704,GO:0090304,GO:0090305,GO:0140096,GO:0140097,GO:1901360,GO:1901564
Exons8
Evalue2.88e-165
EggNOG OGsCOG0177@1|root,KOG1921@2759|Eukaryota
Ec32 ortholog descriptionHhH-GPD domain
Ec32 orthologEc-14_000980.1
EC4.2.99.18
Descriptionoxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
Cds size846
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig85.107.1prot_P-littoralis_Contig85.107.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig85 419939..426133 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791719.0558221-UTR-P-littoralis_Contig85:419908..4199381680791719.0558221-UTR-P-littoralis_Contig85:419908..419938Pylaiella littoralis U1_48UTRP-littoralis_Contig85 419909..419938 +
1680791719.187735-UTR-P-littoralis_Contig85:426133..4269991680791719.187735-UTR-P-littoralis_Contig85:426133..426999Pylaiella littoralis U1_48UTRP-littoralis_Contig85 426134..426999 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791719.0738678-CDS-P-littoralis_Contig85:419938..4199911680791719.0738678-CDS-P-littoralis_Contig85:419938..419991Pylaiella littoralis U1_48CDSP-littoralis_Contig85 419939..419991 +
1680791719.0860648-CDS-P-littoralis_Contig85:420912..4210811680791719.0860648-CDS-P-littoralis_Contig85:420912..421081Pylaiella littoralis U1_48CDSP-littoralis_Contig85 420913..421081 +
1680791719.0995393-CDS-P-littoralis_Contig85:422421..4224961680791719.0995393-CDS-P-littoralis_Contig85:422421..422496Pylaiella littoralis U1_48CDSP-littoralis_Contig85 422422..422496 +
1680791719.1191747-CDS-P-littoralis_Contig85:422851..4229561680791719.1191747-CDS-P-littoralis_Contig85:422851..422956Pylaiella littoralis U1_48CDSP-littoralis_Contig85 422852..422956 +
1680791719.1352134-CDS-P-littoralis_Contig85:423689..4237741680791719.1352134-CDS-P-littoralis_Contig85:423689..423774Pylaiella littoralis U1_48CDSP-littoralis_Contig85 423690..423774 +
1680791719.1470175-CDS-P-littoralis_Contig85:424198..4243011680791719.1470175-CDS-P-littoralis_Contig85:424198..424301Pylaiella littoralis U1_48CDSP-littoralis_Contig85 424199..424301 +
1680791719.160633-CDS-P-littoralis_Contig85:425032..4251431680791719.160633-CDS-P-littoralis_Contig85:425032..425143Pylaiella littoralis U1_48CDSP-littoralis_Contig85 425033..425143 +
1680791719.176534-CDS-P-littoralis_Contig85:425988..4261331680791719.176534-CDS-P-littoralis_Contig85:425988..426133Pylaiella littoralis U1_48CDSP-littoralis_Contig85 425989..426133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig85.107.1

>prot_P-littoralis_Contig85.107.1 ID=prot_P-littoralis_Contig85.107.1|Name=mRNA_P-littoralis_Contig85.107.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=282bp
MSTARGDIPASTSPVTVWKNTRKPIPTDPPQRDWRQQMEGVRSMRRSRDA
AVDSAGAGALKDSSTGSDDDVRFQVLMSAMLSSQTKDPVTAAAVNRMREA
CAPAPLGAAALLATGMDEEVLTELLHPVSFKKTKAKHILMVCERLAKAED
GRGAGAIPDTVEGLLDLPGVGPKMTYLVLDIAWGKVEGICVDTHVHRISN
RLGWVDTWNRDKPKAQNPDKTRKHLQGWLPREHWSEVNELLVGFGQQVCF
AVNPSCSACGISGICPSAERHGDLSSQLNTT*
back to top

mRNA from alignment at P-littoralis_Contig85:419909..426999+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig85.107.1 ID=mRNA_P-littoralis_Contig85.107.1|Name=mRNA_P-littoralis_Contig85.107.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7091bp|location=Sequence derived from alignment at P-littoralis_Contig85:419909..426999+ (Pylaiella littoralis U1_48)
CGTTTTCGATCGATTGTTACTGCTGTGCCCATGTCCACGGCTCGCGGCGA
TATTCCAGCGTCTACATCTCCTGTCACTGTGTGGTGGGTACTCGATCCGT
GTGCGTGTTGTCAAGCTGAAGGTTTGATGCCACCGTCCTGCTGTGATACT
TCGAGCATGTATTGTACACGGAGTAACTGTTGTGTACTTGTCCCCCCTGC
GTGACCCCTGCACGCCAAGGATTTCTACCGAAAGGTATGTGGACAGGCGC
CAGAATAGCTACAGTAGGACGAGCAGACACACACACATGTATGTTCCTTC
GCCTTTCAGCGAGAGCTGATACTGATGTCCTCCCAACTCCTCCAATCAGT
ACTTCAGATCGTCTACCTCCGCAGATAATGAAAATACATTAAAGGAACCT
TCCGCAGCATTCTTATATACGATCAATATGTTGACGGTATTGCAGCGCCA
CTTTCTACAACGAAGGCGTAAAATCTTCACAACGGAAGCTCCCATGGGAT
GTAAAGCCGACGTCGAAGCACCCACCCGATGGTAGAAGCCATGTCCCTGT
GTCTTATCCGTCTTTGAACCAAGAGCAGCAGCAGCAGCAGCAGCAGCAGT
GAATGACGTTTGAGTGCTGTGCGAGGGTTGATTATCACATGAAATTGCTG
TGGAAGACGAGCAGTACTAGAGAGCAGTAACCAGTGCTCGTAGCCGACCG
TTTCTTCGTCAGAGGCGAAAGAAAAAAAAGCGAAACGCAACAACAGGGAG
GTGTGGATCCATGCGATCATCAACGCAAGGGCCGTGTCTGGCACTCGATC
AAGCACACTGCTGCGACTGCGCAACAAGAGAAAAATCTCAGATTACTACA
AAGGAAACAAAAAACAATACAAATAGTTTGCTTACCTCCAACATGCCGAA
ACCTACCGCCGGGACCCCAATCATACTACGCAATGCCAACTACCGCTTGT
GCATCAAGTCCGTCACACATCCTTGCATGATTTTTCGTCCGTACCGCATT
AAAGGAAAAACACCAGAAAGCCGATCCCGACAGATCCACCACAGCGGGAC
TGGCGGCAGCAGATGGAGGGGGTGAGATCCATGCGAAGGTCGCGGGATGC
GGCCGTCGATTCCGCGGGCGCGGGGGCTCTGAAGGATTCCAGCACCGGCA
GTGACGACGACGTGCGGTTCCAGGTGCGTCACTGAGAGAAGACGCGCGAG
GGTACCTGTACCTTTTTACGGTGTTGTGTGATTCGCTGCATCTACCGTAC
TTTATCAAACACAATTTCGGGCGGGACGATTTCGGGGTGTGTACTACAGC
AGTATGATATGATGTCACACTTCTGTATTTTCGTGTTTACTTCTGCCGGT
CGCCACGGCGGCGGCTCAGTCCGTAACTTCGAAGAACCTTAATGGCCAAG
TCCTTTCAGTAGCTCGGTTCTGTAGGTTAAGTTACAATCGACTTTGGATG
TTTTTCTCGTACCTTAACATCAGGTGACAATAGCAGCGGAAATCGATTCC
TTTTGTGCGAGTCCAAAATTTTGGACGCGAACGTCGACGAAGGATATAGG
GACGGCCCGGCCTGCCTAACCCTTCTCGCGAGGAAAACCGTACGGCAAGC
ACCGCAGAAGTGGAAAGCTTAGGAAAAAAACAAATCCTGGGTGACTTTGT
GGCTTTTTCTCCTGCGTGGCCCCGGCTGATGTGCCCGCATATACCTACCT
CAAGTTGTAGACTGGCGCAGAATAGGTGGGAGACAGACAGCACACACACA
CGCGTGCACACAATGATGACACACGCTGCTCACCGCTACGCCGTCTGCCG
AGGCTGGTGCTCACAGTAAGTTCGGAACTGATCATGTTCGAGAGTAATTT
TCTGCGCAACTTTTCTCTGATGATGCAGCGTTGATGTAGGGTGCCTAAAT
AGGCGTTGTAGTGCACGGGACGAGGCCCTGGGCGGTGCGGGGTCCGATGT
GGGCCTTGGTATTGGCTGTTTTGCTACGGAGGGCGATCAAGACCGGGGGG
AAGACTTCCCATCAAGCCTCTCCGAATGATGACTTCAAACAGCCATGGGA
CAAAACCAAGACGGGTGAAAGAGTTTGATATTTTCCGCTGATAAAAGCGG
CAGGGTCAGACCCAAAACTTGCACACATTTTTTCGCACGTTTTTTTTCAC
GCTTCTCTACTGTACTGTTTTGAAAATTAGTGCGAATTAGGCCGCACTCG
CTGTTCGTGCCTGGCGCTCTACCACACGCCTCGATGCGCTCGTGCTGCAG
GGCGAAGTTGGCGCGTCGCTTCCTGCTTTACACGCACAACTTTCAGCATT
GTACTGCTAGTAGACGCCGCGTTTCGTTTCGTGGTGCGGAGTCTCGCGAG
GAACACAGATGGCTACCTGTAACGTTGCCCCTGTCAGCCCGGGCCGTTCA
GGTTGGCAAAACGCCTATCGCACGCCTGCCCTTAACATACATCGTGCTCG
CAGTTTCGATGTGGTCGCTCTCCTTGCCTTTTGACTACCGCCGTGTGAAC
CTCCGTGTGGCAGGTGTTGATGTCTGCGATGCTTTCGAGCCAGACGAAAG
ACCCCGTCACGGCGGCAGCTGTGAACAGGATGAGAGAAGTGAGCAAGATT
GGCTTGGTCGTCCTCAGCTAGGCTACTGATGCTGCTGCTTCTTTATTTGT
TTTGCTTCGGGATAGGGGGGGGGGGGGCTTCCATGTCATGGTCGAGTGAT
TGCGCTGCTCTGTGCGACCCTTTTTGGCTCCGTGGTCCCTGTTCCACACA
GCAGCCTGCTCCACGAAGGGAGTATCGATATTGCCTTGTTACAGCAGGAG
TACACGAGATGTGTGCATCTATGTATAGTTAGACATGCAGGAATGCACGG
ACAGACTGTTACTCTCAGTTCACCCTTCGACTTCGTCCAATGTTCTTGTA
CCTCTGCCTCTACCCTCGGATAATCCCCAATGCCGATTTCCAGGCTTGCG
CGCCAGCTCCCTTGGGAGCGGCAGCTCTTCTCGCCACGGGCATGGATGAG
GAAGTGCTGACGGAGCTCCTGCACCCTGTCAGCTTCAAGAAAACCAAGGC
GAGTTGGGGAAGGAGTTTGACGGCTGAAACATACACCCCCACACACCAGA
AGGCAGGCGGTTCGGTTTTGCTCTGAACGCCAGCTTCAAGAAAACCAAGG
CGAGTTGAGGATGAAGCTGGACAGCTTTAACATTCACCCCACACACCAGA
GGTTGGTGAATGCAGTTTGCTACAGTAATTAACTACCATTTCCTTGGAAT
GTAATATTTCCGTGCTCGCTTTGCGTTTCGGCGGTGGAGCTGTTCCTATC
ATGTGCGCAGATGTTGGTGAGGAGGAGGTACTCAAAGGTCGTGCTGGGCG
TACTGTACGGCCATTGACCCTCGTACCCCTCCGAAGCCGCCACGGAGCGT
GCCGGGTTAACATGATAGCGCGAAGATGCGCGAGGTGTTTTTCGCGAATC
GCATGGAGGTTTAGCTGCATTCCGAGAAACGCCACTCGGGTACATACCTA
GTGCTAGTTTGTTAGTGGTGTTTGCCCACGCCTGTTTTCTTGTCTGGCCA
CGTCCAGATACAACCACAGGTATCGTATGCCTATGGTAAACATTATATGG
TTTTTTAAGTTCTTACACTGGTGGTTTAGTCGAGGCTTGCCTAATAAGGG
TGCCATATGGCTCTTCCGTGAATATTTTACCGTGTAGCTGGCTGCCTTGT
TGGTAAGGTAGCTTGGCCACTTACTGACTGCGTAGCCTTGTGCCCGATGC
AATGTGTCCCCACGGCTGCCACCCTCTGAAGGCGAAACACATCCTCATGG
TGTGCGAACGACTCGCCAAGGCAGAGGATGGTCGAGGGGCCGGAGCCATC
CCAGACACCGTGGAAGGTGCGCGCAGAAGCACCGGAGCAGCAGCGGCTTG
GGTTATCACAGACGAATTCCATCTTGTACGAGTATCATATAAACTTCGAA
GCGGTTTTAATTTTTCACGTCCAAAAAATGCCAGCACCAGCACCGACTAC
TCCTGTGGATTGTATAGCGCCACTTTTCCAATGGTGTTCGAGAGGCGTCC
GCAAACCAAGCCAATACGTCGCTTTTTTTTTTTCAACGCGGTCGTACGGG
AGATAAACCTGACACGCCGAACATCCTTTGACAGCGCTCCTCTCTGCTAT
CATCTGCCCCCCGGAACCCTTCCCACCATGCGCGCGTGGGTCCGCGCGGT
TGGCCCTATCTCATCTTTCTGCGTTCCGTTTTTTGTGGCCATGTCTGCTG
CCGTACGATATACGTGTTGACCTTTGCCGTGAGTTCGCAGGGCTGCTCGA
CCTCCCAGGGGTAGGCCCAAAGATGACGTATCTTGTATTGGACATCGCGT
GGGGCAAGGTCGAGGGCATCTGTGTCGACACGCATGTGCACAGGTATTGA
CGTACAGCAAGGTGGTGTGCATGCACTAGAGGGAGGACAGGAGCGGGAGG
GAGGCAGGGGAGACGGTGGGTCTTTTCGAGTGACGTGTACTCCGTTCCCC
GTCCCCCCGTGTAATTTGTTTTGGCGTTGTTGTCCTGTTTTTTCCTTGCT
GGGCGTTCTTTTAGTTTGTTTTACGTCTTCGGCGTACACGCTTTCCTCCA
ATACCCCCGGCTCGTCTACAACACATCTGGTAGTACATACAGTAGTGGGA
GAGGAGAGGAAAAAATCGTTAGATTTTTTTCATTTCTATCACTCGCTGCC
TGGTCCAACCGGCGCCTTCAGATCTGGGTTGAAGACCAAGCACTCGGGGT
TTGAGTGTAGTATGATTGGGGGCTCCGAGGAAAAGAAACTCCGTCGGGCC
CATCCCCCCCTCTCGCCTGTCGTCCTTCTCCCTTCCCCACCCGTACCTAC
ATACACCTGGCACATTTACGTACGGCGTGTGCATCCATGTTGCTGATAAG
ACACACAAAAGCAAAGAGGAAGAAGGCAACACAACCCACAGCCCCTGACT
CGCGTTCAGCTTCAGTAATCACTGCTCTTTAATTGTCTTATCGTAAAAAG
AATGAAAACACCCGAGGGGAGGTGGCGTGGCCGCCGGTGCCTCACCCGAA
AAAATCATTTCCTTTGCAATGCCGACCCGCTTCTTATCTGCTCCCGAAAA
AAACGGCGGTCCTGCCCGGCGCAGGATAAGCAACCGTCTCGGTTGGGTAG
ACACCTGGAACAGAGACAAGCCCAAGGCCCAAAATCCTGACAAGACTAGG
AAGCACCTGCAGGGATGGCTTCCGCGGGAGCACTGGTAAGACCTTGCTTT
TTTTTTCTCTCTCTCTCCGCGGACTGCCTACTCGTACTTGCGCCTCTTTT
TTTTTTTATTAACGATTGATAACTACACAGCACATCAGCAGTGGTTGAGC
ATGATATGATGGGTCCCCGTATTGTTGTTGGAGGGTCATTCGTCGGTCCT
TGCACGCTGTCGCGCGCGTCTTGCGTGGGCTCGAGTGACACGGGAGGCAG
GCGGGCGATGTTCACCCACTCGAGGCTCTGGGTTGACACGGTTGGTGCGA
TAACCCGATATCATAGCTTCGGGGGGTTTCTGAGACGACGGCGGGTAAAA
CGACAACTGCTACAGCAGTAATCATGTTCGCTACAGCCGTATATACGAGC
AACTACTGCTTTGATTTTTATTTTTATTCACAGGTTAGCTTTCACACACA
GGCAGCGCCACCTTTCCTTTTTTTGCGAGATCTCTGTACATCGTTCTGCT
GCTGTAGCACCCCAGATCCTCCTCGGCAAGCATGGTGTGAAGCCAGTGTC
CAAACCTGCATCGAGGGTTGCACGCCCAGTACTGCCTCCCCTGCCCGGCC
GCCCCCCCCCCCCAGCAGCGATTTGGTCGAGAGGAGTCCGGTTGTGCGTT
CCGTTTGAAACCGCATGACACACGACACGCACAAGCACACACATCGCAGA
GATGGGCCTTGTATTTCTCAGGACGAGAGAAGGTGTTGGATGTTAATGCG
TGTTCGTGTTCTTCGAATTGAGATCTGGACGCCCGGACCCTTTCTACACT
CCGCATCCCTCCGTTCGACCCGCTGTCTTCGATATTTGTTTTTCGTTTTT
GTTTCATCTTCCATTGCAACACGTTTTCAGGTCGGAGGTCAACGAGCTCT
TGGTGGGGTTTGGGCAGCAAGTCTGTTTTGCGGTAAATCCGTCCTGTTCT
GCGTGCGGCATCAGCGGGATTTGTCCCTCTGCAGAGAGACACGGCGACCT
TTCCTCGCAGCTAAATACGACATGACCTTTTATTGTAACATGGTTACATA
ATACATGCACCAAGTTTACGATACAGTCTGGTCTAAAGCGGCGGTTGTGG
CAGAGAGAGATAAAGGGTGCCCGCAGTTTCCTTTACGTTTCGCTTTACGC
TTGGGACGGTTTCACACGCCCTTCTGCTGCCAGCCATGAATGGTGCAAGG
AAGAAAGGGGGGTGTGGTGTTTTTGCACGGGGGGGCTCGCAGGCGCCGCA
GCATCTCGATTTTCTTGACACTTGTATCGCCACCGCAAAACACTCGAGTG
CAGCAGCAGTATCCCACGCCATTTCGATGGAGGAAAGAAACCCGCTGAGA
CGGTTGGGAGGTTGTCACCCCAGATGTGCAGCAGCACGAGCGAGTCCCTT
GCATCCCTCCGCGGTATCGGATTCCCTCTCCGGTGTATGTGGAATGATCG
GATATATGATTGTCGCAGAGAGAGAGGCGGGTGCAACTCTTTCGCGGCCG
GCGTTTCAGGTCTGAGCCAAGAATATTGCGTCTGCAAATTTGATGAGGTA
CGTAGAACTACCAATTTATCTGCAGCTTTGTGATGCTTTCACCTTCTGCC
AGACGCCCAGCGCTCGAAAACGGATTGCCCTTGAAACGTGTTCGTTGTGC
GGTAAGAGGGCGGGAATCTACGAACAGGTGATCTCCGCCCAGATATACAG
ATGGTGAACTAATCGCAGTTAGTTGCCGTTTCGTGTGCTTCACGGACACA
CGAAGCGTGGCATTTTGTCTCTTGCTCATATTTTTCTGTGTGGACGCGTG
TCGTTTTCAACGCGGTGTTACAGTACTTGTGCACGCTGTGTGGTGATTTC
TGAATGTAATATCGACCTATACGAATCGAGACATCGCCTGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig85:419909..426999+

>mRNA_P-littoralis_Contig85.107.1 ID=mRNA_P-littoralis_Contig85.107.1|Name=mRNA_P-littoralis_Contig85.107.1|organism=Pylaiella littoralis U1_48|type=CDS|length=846bp|location=Sequence derived from alignment at P-littoralis_Contig85:419909..426999+ (Pylaiella littoralis U1_48)
ATGTCCACGGCTCGCGGCGATATTCCAGCGTCTACATCTCCTGTCACTGT
GTGGAAAAACACCAGAAAGCCGATCCCGACAGATCCACCACAGCGGGACT
GGCGGCAGCAGATGGAGGGGGTGAGATCCATGCGAAGGTCGCGGGATGCG
GCCGTCGATTCCGCGGGCGCGGGGGCTCTGAAGGATTCCAGCACCGGCAG
TGACGACGACGTGCGGTTCCAGGTGTTGATGTCTGCGATGCTTTCGAGCC
AGACGAAAGACCCCGTCACGGCGGCAGCTGTGAACAGGATGAGAGAAGCT
TGCGCGCCAGCTCCCTTGGGAGCGGCAGCTCTTCTCGCCACGGGCATGGA
TGAGGAAGTGCTGACGGAGCTCCTGCACCCTGTCAGCTTCAAGAAAACCA
AGGCGAAACACATCCTCATGGTGTGCGAACGACTCGCCAAGGCAGAGGAT
GGTCGAGGGGCCGGAGCCATCCCAGACACCGTGGAAGGGCTGCTCGACCT
CCCAGGGGTAGGCCCAAAGATGACGTATCTTGTATTGGACATCGCGTGGG
GCAAGGTCGAGGGCATCTGTGTCGACACGCATGTGCACAGGATAAGCAAC
CGTCTCGGTTGGGTAGACACCTGGAACAGAGACAAGCCCAAGGCCCAAAA
TCCTGACAAGACTAGGAAGCACCTGCAGGGATGGCTTCCGCGGGAGCACT
GGTCGGAGGTCAACGAGCTCTTGGTGGGGTTTGGGCAGCAAGTCTGTTTT
GCGGTAAATCCGTCCTGTTCTGCGTGCGGCATCAGCGGGATTTGTCCCTC
TGCAGAGAGACACGGCGACCTTTCCTCGCAGCTAAATACGACATGA
back to top