mRNA_P-littoralis_Contig85.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: A0A6H5JIA4_9PHAE (PHD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA4_9PHAE) HSP 1 Score: 414 bits (1063), Expect = 1.280e-140 Identity = 216/288 (75.00%), Postives = 240/288 (83.33%), Query Frame = 1
Query: 1 QEFVAICAHLPAELKDDLSRVAALSEETHRLTAELSRDQAEILERAKAKYRKMARPEQLKNLIDEDALQRAHEKRRKVDHGVTEKVSITKKMYGALDACIKSIDDEIDKLEKDVKESYGVIPDIPSLAPEVSAENKKNAAAAALAAD--GGLTAGPQTRAGLAAYPGVAAAASGXXXXXXXXLGAVAGGVARGNELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGCAADAREKERREQLVKKAVSANTTPVKLSAAVKLPEN 858
QEF+AICAHLP ELKDDL +VA LSEETHRLTAELSRDQAEILERAKAKYR+M RPEQLKNLIDEDALQ++ +KRRKVD V+EKVSITK+MYGALD CIK+IDDEIDKLEKDVKESYG +PDIPSLAPE+ AE+KK A GGL AGPQTRAG+AAYP A A L AGG R N+L+S+NEPVYCVCRQ+GWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQK++ FWLCPGC+ DAR KE+REQL ++A SANTTPVK +AAVKLPEN
Sbjct: 39 QEFLAICAHLPTELKDDLKKVATLSEETHRLTAELSRDQAEILERAKAKYRQMTRPEQLKNLIDEDALQKSRQKRRKVDESVSEKVSITKRMYGALDTCIKNIDDEIDKLEKDVKESYGAMPDIPSLAPEMFAEHKKTAXXXXXXXXXXGGL-AGPQTRAGVAAYPAAALAGG----VGAGALXXXAGGAVRSNDLLSTNEPVYCVCRQVGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKEIGFWLCPGCSVDARAKEKREQLERRATSANTTPVKPAAAVKLPEN 321
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: D7FVE0_ECTSI (PHD finger protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE0_ECTSI) HSP 1 Score: 406 bits (1044), Expect = 1.010e-137 Identity = 220/288 (76.39%), Postives = 243/288 (84.38%), Query Frame = 1
Query: 1 QEFVAICAHLPAELKDDLSRVAALSEETHRLTAELSRDQAEILERAKAKYRKMARPEQLKNLIDEDALQRAHEKRRKVDHGVTEKVSITKKMYGALDACIKSIDDEIDKLEKDVKESYGVIPDIPSLAPEVSAENKKNAAAAALAAD--GGLTAGPQTRAGLAAYPGVAAAASGXXXXXXXXLGAVAGGVARGNELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGCAADAREKERREQLVKKAVSANTTPVKLSAAVKLPEN 858
QEF+AICAHLP ELKDDL +VA LSEETHRLTAELSRDQAEILERAKAKYR+M RPEQLKNLIDEDALQ++ EKRRKVD V+EKVSITK+MYGALD CIK+IDDEIDKLEKDVKESYG +PDIPSLAPE+ AE+KK A GGL AGPQTRAG+AAYP AA A G XXXXX RGN+L+S+NEPVYCVCRQ+GWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQK++ FWLCPGC+ DAR KE+REQL ++A S NTTPVK +AAVKLPEN
Sbjct: 30 QEFLAICAHLPTELKDDLKKVATLSEETHRLTAELSRDQAEILERAKAKYRQMTRPEQLKNLIDEDALQKSREKRRKVDESVSEKVSITKRMYGALDTCIKNIDDEIDKLEKDVKESYGAMPDIPSLAPEMFAEHKKTAXXXXXXXXXXGGL-AGPQTRAGVAAYP-AAALAGGVGAXXXXXXXXX---XVRGNDLLSTNEPVYCVCRQVGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKEIGFWLCPGCSVDARAKEKREQLERRATSTNTTPVKPAAAVKLPEN 312
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: J3LST5_ORYBR (PHD finger protein ING n=6 Tax=Oryzinae TaxID=1648021 RepID=J3LST5_ORYBR) HSP 1 Score: 88.6 bits (218), Expect = 1.480e-16 Identity = 52/171 (30.41%), Postives = 85/171 (49.71%), Query Frame = 1
Query: 247 TEKVSITKKMYGALDACIKSIDDEIDKLEKDVKESYGVIPDIPSLAPEVSA---ENKKNAAAAALAADGGLTAGPQTRAGLAAYPGVAAAASGXXXXXXXXLGAVAGGVARGNELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGC 750
TEKV + ++ Y +++ IK +D+++ + +D+K+ + PD PS+ P +SA ++K+ + A R + + S + ++ + NEP YC+C Q+ +GDMI CDNE+CE GEWFHY CVGL + + W CP C
Sbjct: 91 TEKVLLARQAYDLIESHIKRLDEDLGQFAEDLKQEGKIPPDEPSILPPISAFSRDDKRRPGFSTPQATKKFREREWDRERSMDFDLMPPPGSNKKTSTPMDV----------DQTIDPNEPTYCICHQVSYGDMIACDNENCEGGEWFHYSCVGL-TPETRFKGKWFCPTC 250
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: A0A0A9NUC7_ARUDO (PHD-type domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9NUC7_ARUDO) HSP 1 Score: 82.4 bits (202), Expect = 4.610e-16 Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 583 VSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGC 750
+ NEP YC+C Q+ +GDMI CDNE+CE GEWFHY CVGL + + W CP C
Sbjct: 25 IDPNEPTYCICHQVSYGDMIACDNENCEGGEWFHYSCVGL-TPETRFKGKWFCPTC 79
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: A0A448X7Q8_9PLAT (Hypothetical protein n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A448X7Q8_9PLAT) HSP 1 Score: 81.3 bits (199), Expect = 1.250e-15 Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 583 VSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGCAADAR 765
V NEP YCVC+Q+ +G+M+ CDN DC H EWFH+ CVGL + + Q W CP C AD +
Sbjct: 23 VDPNEPTYCVCKQVSYGEMVACDNPDC-HVEWFHFGCVGLTVKPKGQ---WFCPQCIADGK 79
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: K4AE43_SETIT (PHD finger protein ING n=8 Tax=Poaceae TaxID=4479 RepID=K4AE43_SETIT) HSP 1 Score: 85.5 bits (210), Expect = 1.830e-15 Identity = 49/168 (29.17%), Postives = 78/168 (46.43%), Query Frame = 1
Query: 247 TEKVSITKKMYGALDACIKSIDDEIDKLEKDVKESYGVIPDIPSLAPEVSAENKKNAAAAALAADGGLTAGPQTRAGLAAYPGVAAAASGXXXXXXXXLGAVAGGVARGNELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGC 750
TEKV + ++ Y +++ IK +D+++ + +D+K + PD P + P + ++ + PQ AG ++++ NEP YC+C Q+ +GDMI CDNE+CE GEWFHY CVGL + + W CP C
Sbjct: 89 TEKVLLARQAYDLIESHIKRLDEDLGQFAEDLKHEGKIPPDEPPVLPPIPVVSRDEKRRLGFST-------PQASKKFREREWDRERGMDFDLMPPPGSSKKAGTPMDVDQMIDPNEPTYCICHQVSYGDMIACDNENCEGGEWFHYTCVGL-TPETRFKGKWFCPTC 248
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: A0A199VF25_ANACO (PHD finger protein ING n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A199VF25_ANACO) HSP 1 Score: 85.5 bits (210), Expect = 1.890e-15 Identity = 53/171 (30.99%), Postives = 85/171 (49.71%), Query Frame = 1
Query: 247 TEKVSITKKMYGALDACIKSIDDEIDKLEKDVKESYGVIPDIPSLAPE---VSAENKKNAAAAALAADGGLTAGPQTRAGLAAYPGVAAAASGXXXXXXXXLGAVAGGVARGNELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGC 750
TEKV + ++ Y +++ IK +D+++ + +D+K+ + PD P++ P V+ + K+ G +T PQ++ GV ++ + NEP YC+C Q+ +GDMI CDNE+CE GEWFHY CVGL + + W CP C
Sbjct: 91 TEKVLLAQQAYNLIESHIKRLDEDLAQFAEDLKQEGKIPPDEPAILPPLPVVTRDEKRKG--------GYIT--PQSKRLKEREWGVERGMDLDLMPPPGSNKKSTPASVDVDQSIDPNEPTYCICHQVSYGDMIACDNENCEGGEWFHYSCVGL-TPETRFKGKWFCPTC 250
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: A0A1E3PG82_9ASCO (Chromatin modification-related protein n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PG82_9ASCO) HSP 1 Score: 85.1 bits (209), Expect = 3.050e-15 Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 574 NELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGCAADAREKERREQLVKK 798
+ L+ + +YC CRQ+ +GDMIGCDNE+C++ EWFHY CVGL+ Q W CP C +EKE +++ KK
Sbjct: 194 SSLMGDEDEIYCFCRQVSFGDMIGCDNENCKY-EWFHYGCVGLKEPPQG---IWYCPACTKTTKEKETKKERKKK 264
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: I1GNB5_BRADI (PHD finger protein ING n=4 Tax=Brachypodium distachyon TaxID=15368 RepID=I1GNB5_BRADI) HSP 1 Score: 84.7 bits (208), Expect = 3.480e-15 Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 574 NELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGC 750
++++ NEP YCVC Q+ +GDMI CDNE+CE GEWFHY CVGL + + W CP C
Sbjct: 192 DQMIDPNEPTYCVCHQVSYGDMIACDNENCEGGEWFHYSCVGL-TPETRFKGKWFCPTC 249
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Match: UPI001FB1588C (PHD finger protein ING2 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB1588C) HSP 1 Score: 84.7 bits (208), Expect = 3.790e-15 Identity = 53/177 (29.94%), Postives = 84/177 (47.46%), Query Frame = 1
Query: 247 TEKVSITKKMYGALDACIKSIDDEIDKLEKDVKESYGVIPDIPSLAPEVSA--ENKKNAAAAALAADGGLTAGPQTRAGLAAYPGVAAAASGXXXXXXXXLGAVAGGVARG-------NELVSSNEPVYCVCRQIGWGDMIGCDNEDCEHGEWFHYHCVGLEMVDQKQLIFWLCPGC 750
TEKV + ++ Y +D+ +K +D++++ +D+K+ + D P+ P V N+K A + PQ++ Y L GG+ + ++ + NEP YC+C Q+ +GDMI CDNE C+ GEWFHY CVGL + + W CP C
Sbjct: 91 TEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPSDEPATLPPVPLVPRNEKRKA---------IYTAPQSQTRRVEYR-----ERDWDRDRDFELMPPPGGLKKDFSVPVEIDQPIDPNEPTYCICHQVSYGDMIACDNESCQGGEWFHYSCVGL-TPETRFRGKWYCPTC 252 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig85.1.1 >prot_P-littoralis_Contig85.1.1 ID=prot_P-littoralis_Contig85.1.1|Name=mRNA_P-littoralis_Contig85.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=370bp QEFVAICAHLPAELKDDLSRVAALSEETHRLTAELSRDQAEILERAKAKYback to top mRNA from alignment at P-littoralis_Contig85:7428..9930+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig85.1.1 ID=mRNA_P-littoralis_Contig85.1.1|Name=mRNA_P-littoralis_Contig85.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2503bp|location=Sequence derived from alignment at P-littoralis_Contig85:7428..9930+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig85:7428..9930+ >mRNA_P-littoralis_Contig85.1.1 ID=mRNA_P-littoralis_Contig85.1.1|Name=mRNA_P-littoralis_Contig85.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1110bp|location=Sequence derived from alignment at P-littoralis_Contig85:7428..9930+ (Pylaiella littoralis U1_48)back to top |