mRNA_P-littoralis_Contig848.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig848.9.1
Unique NamemRNA_P-littoralis_Contig848.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig848.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig848contigP-littoralis_Contig848:54840..55796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size278
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791712.3653452-UTR-P-littoralis_Contig848:54839..549361680791712.3653452-UTR-P-littoralis_Contig848:54839..54936Pylaiella littoralis U1_48UTRP-littoralis_Contig848 54840..54936 -
1680791712.4060647-UTR-P-littoralis_Contig848:55771..557961680791712.4060647-UTR-P-littoralis_Contig848:55771..55796Pylaiella littoralis U1_48UTRP-littoralis_Contig848 55772..55796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791712.3793776-CDS-P-littoralis_Contig848:54936..550391680791712.3793776-CDS-P-littoralis_Contig848:54936..55039Pylaiella littoralis U1_48CDSP-littoralis_Contig848 54937..55039 -
1680791712.3929257-CDS-P-littoralis_Contig848:55718..557711680791712.3929257-CDS-P-littoralis_Contig848:55718..55771Pylaiella littoralis U1_48CDSP-littoralis_Contig848 55719..55771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig848.9.1prot_P-littoralis_Contig848.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig848 54937..55771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig848.9.1

>prot_P-littoralis_Contig848.9.1 ID=prot_P-littoralis_Contig848.9.1|Name=mRNA_P-littoralis_Contig848.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
MRKAAAAGEEMTDKVRQRSYYHHLQASTTVVQPTVGTECRHARDAGVASL
A*
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mRNA from alignment at P-littoralis_Contig848:54840..55796-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig848.9.1 ID=mRNA_P-littoralis_Contig848.9.1|Name=mRNA_P-littoralis_Contig848.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=957bp|location=Sequence derived from alignment at P-littoralis_Contig848:54840..55796- (Pylaiella littoralis U1_48)
TCTGGCGGTATCGCCAGAGCACGAGATGAGGAAGGCTGCTGCTGCTGGGG
AGGAAATGACCGATAAAGTTCGCCAAAGGTGTGGTCCTTCGAAATGGTTC
ATTTTTTGTGTATGATTGAAAAATAAATTTGTCCTGCGTTGGCAATGGTA
CGTTGATGTTACGCTTTCCTGTCCGTAATTTGGTTAATTGTAGAGCTTTC
CCTCTAATAGCAAGTACTTGTAGTTAATGAGAGACAGCGAGAGACATTGC
CGTATGATAGGGTTAGTTGCGTACGACACCTGCTGAAACGATTTAAAATC
ACAGATATCCACACCGAAGAGAGTATCACCATCTAACAATACGTTTACTA
TCGACGACACGTTTCCAACGCGCCCTTTACGGCACCGACACATGTAATGA
ATCGTGCTTTGTAAATCGGTCCAGGGGGGGCCGTCGTATCTTACGGCACC
CACGGAACACACGCGTCACGCCTGCTGCTGCTTTACTGCTGCTGCTGTAC
TGCTGCTGCTGCTGCGCTGCTTATTTGCTGTACTGCTGCTGCTGCTACTT
CGCTGCTGTTGCTGCTGTACTGCTGCTGCTGGGATGTGTAATGATGTATC
ATCTCGAAGTATCATCTCACTCGAGACGGAAAGCATAGCAGTGGCACAGT
TATAACAACACAAGAACAGAGGTACAGCAAGACAAGAGCGTTGTGTGTGC
GGCAGGCTGCGGCGTGATGTGTAAATTCTGTGATGCGAAATTTTACCACG
AAAACAGGTCATACTATCATCACCTACAGGCATCAACAACAGTAGTACAG
CCGACCGTGGGAACGGAGTGTAGACATGCTCGTGATGCTGGTGTGGCGTC
GCTGGCGTAGGAGTGGAAGGCTTGGGGGAAGCAGCAGCCAGGGCTGACAA
TGTCGTGAGGGAAGCAGCGGCAGGTGGGCGGACTGCTGCTGCCGTTGAGC
GTGCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig848:54840..55796-

>mRNA_P-littoralis_Contig848.9.1 ID=mRNA_P-littoralis_Contig848.9.1|Name=mRNA_P-littoralis_Contig848.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig848:54840..55796- (Pylaiella littoralis U1_48)
ATGAGGAAGGCTGCTGCTGCTGGGGAGGAAATGACCGATAAAGTTCGCCA
AAGGTCATACTATCATCACCTACAGGCATCAACAACAGTAGTACAGCCGA
CCGTGGGAACGGAGTGTAGACATGCTCGTGATGCTGGTGTGGCGTCGCTG
GCGTAG
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