mRNA_P-littoralis_Contig841.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig841.11.1
Unique NamemRNA_P-littoralis_Contig841.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A6H5K9R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R2_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.720e-39
Identity = 75/129 (58.14%), Postives = 96/129 (74.42%), Query Frame = 3
Query:  579 DNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAG-TLPWQLECTAEA 962
            DN   H IN DP+V AA  ADGWDIRLI+QP+N P TNILDL FFN+IQSLQDRTTPRTVD+ +  VK A+++ S   L++VW SLQA LQ+I+L  GDN  KLPH++K +   +G ++P +L  +AEA
Sbjct:    4 DNKPSHCINADPDVVAAGTADGWDIRLINQPSNIPHTNILDLGFFNAIQSLQDRTTPRTVDEFIIEVKRAFEEQSPSTLDKVWESLQAILQEIILAKGDNTIKLPHLKKDKAANSGRSIPKELPLSAEA 132          
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A8I6WKB7_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6WKB7_HORVV)

HSP 1 Score: 149 bits (376), Expect = 2.040e-39
Identity = 73/136 (53.68%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAGTLPWQLECTAEAW 965
            + ++I+QDNA+PH++ NDPE   A+++ G DIRLI QPANSPD N LDL FFNS+QSL D  +PRT+ DL+K V E ++     KLNRV+LSLQAC+ +I+   G N  K+PHV K RLE+ G LP +L C  E +
Sbjct:  124 QTIFIKQDNAKPHILPNDPEFLVAVESTGLDIRLIQQPANSPDLNGLDLGFFNSLQSLTDCLSPRTLQDLIKGVLEEFENYEVYKLNRVFLSLQACMIEILNHAGGNGYKIPHVNKERLESLGLLPQRLTCPQEVY 259          
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A0A9BDH3_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9BDH3_ARUDO)

HSP 1 Score: 144 bits (363), Expect = 1.360e-38
Identity = 70/133 (52.63%), Postives = 95/133 (71.43%), Query Frame = 3
Query:  558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAGTLPWQLECTA 956
            K ++IQQDNARPH+  ND     A + DG+DIR++ QPANSPD NILDL FFNS+QS+Q +TT +T ++LV AV +A+++    K NR++L+L  CL +IM  GG+N   +PH+RK  LE  G LP QL+C A
Sbjct:   37 KPIFIQQDNARPHIAPNDKLFCEAAKQDGFDIRIVCQPANSPDLNILDLGFFNSLQSIQQKTTCKTKEELVAAVDKAFEEYQVSKANRIFLTLHGCLNEIMRIGGNNSYNIPHIRKAMLERQGHLPLQLKCDA 169          
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A4Q9LUD7_9MICR (Uncharacterized protein (Fragment) n=2 Tax=Hamiltosporidium TaxID=1176354 RepID=A0A4Q9LUD7_9MICR)

HSP 1 Score: 140 bits (353), Expect = 2.030e-37
Identity = 66/144 (45.83%), Postives = 97/144 (67.36%), Query Frame = 3
Query:  558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAGTLPWQLECTAEAWEKGAAALE 989
            KI+++QQDNA+PH  +ND ++ A   AD W+I+  +QPANSPD N+LDL FFNSIQSLQ   +P T+D+L+  V++A+ Q     L+ V+ +LQAC++ IML  G N  K+PH+ KG+L   G L  +  C+ E++ K  +  E
Sbjct:   14 KIIYVQQDNAKPHFSDNDADIVALGSADDWNIKFKAQPANSPDFNVLDLGFFNSIQSLQHEASPHTIDELINCVQDAFHQLEANTLDNVFTTLQACMESIMLADGGNGYKIPHISKGKLGREGRLLEKYVCSKESYVKAKSNFE 157          
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 4.050e-37
Identity = 75/136 (55.15%), Postives = 100/136 (73.53%), Query Frame = 3
Query:  558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAG-TLPWQLECTAEA 962
            + ++IQ DN   H IN DP+V AA  ADGWDIRLI+QP+NSPDTNILDL FFN++QSLQDR TPRTVD+ +  VK A+++ S    ++VW+SLQA LQ I+L  G+N  KLPH++K     +G ++P +L  +AEA
Sbjct:  149 RTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAILQ-IILAKGNNTFKLPHLKKDNAANSGRSIPKELPLSAEA 283          
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A452XZT7_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452XZT7_AEGTS)

HSP 1 Score: 144 bits (364), Expect = 9.330e-37
Identity = 71/136 (52.21%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAGTLPWQLECTAEAW 965
            + ++IQQDNA+PH++ NDPE  AA++  G DIRLI QP NSPD N L+L FFNS+QSL D  +PRT+ DL+K V + ++     KLNRV+LSLQAC+ +I+   G N  K+PH  K RLE  G LP +L C  E +
Sbjct:  210 QTIYIQQDNAKPHILPNDPEFVAAVERTGLDIRLIQQPVNSPDLNGLELGFFNSLQSLTDCLSPRTLQDLIKGVLDEFENYEVYKLNRVFLSLQACMIEILNHAGGNGYKIPHANKERLENLGMLPPRLTCPREVY 345          
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A811Q0I0_9POAL (Hypothetical protein n=2 Tax=Panicoideae TaxID=147369 RepID=A0A811Q0I0_9POAL)

HSP 1 Score: 138 bits (348), Expect = 1.920e-36
Identity = 67/143 (46.85%), Postives = 96/143 (67.13%), Query Frame = 3
Query:  558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAGTLPWQLECTAEAWEKGAAAL 986
            +I+WIQQDNA  H+  +DP+ + A+   G DIR+++QP+NSPD N LDL FF S+QS+ DRTT R +DD++  V   ++  + V LNRV+L+LQ C+ ++M + G N  K+PH+ K RLE AG LP  L C  E  +K   +L
Sbjct:   31 EIIWIQQDNAPSHIHADDPDFKTAVAHTGLDIRIMNQPSNSPDMNCLDLGFFASLQSMTDRTTSRNMDDIIANVINEYEHYNPVILNRVFLTLQGCMIEVMKDNGGNRYKIPHMNKPRLEAAGMLPKSLSCDREIVQKAIESL 173          
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: A0A834FW95_RHOSS (Uncharacterized protein n=3 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FW95_RHOSS)

HSP 1 Score: 145 bits (366), Expect = 2.320e-36
Identity = 70/137 (51.09%), Postives = 98/137 (71.53%), Query Frame = 3
Query:  558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAGTLPWQLECTAEAWE 968
            + ++IQQDNARPH+  ND E   A   +G+DIRL +QPANSPD N+LDL FFN+IQSLQ +  PRT+D LV AV++++ +    +L+ V+LSLQAC+ ++M   G N+ KLPH++K +L   G LP+QLEC  +  E
Sbjct:  297 ETIYIQQDNARPHIKPNDVEFHEAATRNGFDIRLTNQPANSPDLNVLDLGFFNAIQSLQHQEAPRTIDQLVNAVEKSFDKLPSRELDSVFLSLQACMVEVMKVNGGNNYKLPHIKKPQLRRDGVLPFQLECGRDVME 433          
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: UPI00098AC6DC (uncharacterized protein LOC109746020 n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI00098AC6DC)

HSP 1 Score: 140 bits (354), Expect = 3.550e-36
Identity = 70/144 (48.61%), Postives = 96/144 (66.67%), Query Frame = 3
Query:  558 KIVWIQQDNARPHLINNDPEVRAAMQADGWDIRLISQPANSPDTNILDLFFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQDIMLEGGDNDCKLPHVRKGRLETAGTLPWQLECTAEAWEKGAAALE 989
            + ++IQQDNA+PH++ +DPE  AA+   G DIR+I QPANSPD N+LDL FFNS+QSL D  +P+T+  L+K V E ++     KLNR++L+LQ C+ +I+   G N+ K PHV K RLE  G LP +L C  E +      LE
Sbjct:  123 QAIYIQQDNAKPHILLDDPEFLAAVAKTGLDIRIIQQPANSPDLNVLDLGFFNSLQSLTDCLSPKTLQVLIKGVLEEFEGYEVYKLNRIFLTLQTCMIEILNHAGGNEYKTPHVNKERLEGLGQLPPRLSCPREVYTNALHNLE 266          
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1)

HSP 1 Score: 143 bits (360), Expect = 3.710e-36
Identity = 86/181 (47.51%), Postives = 110/181 (60.77%), Query Frame = 1
Query:   13 LQNVPLKMRTTQRGIATAIGLPKTTFRRRMRELQVKPQTRHVKPLLTTKSKIERLRWARRWTIPTAEVPAGGTRRFSGMGNVVCVDEKWFYICNVKQRYYVRDNEPAPRRQVQHKSHITKVMLLGAVARPRCNTTNNTDFDGKIGLYPFTRREATQRNSRNRVAGTMVTKTVE-VTKERYK 552
            ++ VPL  R+T R +A AI + KTT  RR++E  ++P T  VKP LT  +K  RL +      P        T  FS M NVV +DEKWFY+C    +YY+  +EP P R+V+ K  ITK M L AVARPR        F GKIG++PFT  E  +RNS+NRVAGTMVTK  E +TKE+ K
Sbjct:   28 IKQVPLNRRSTVRSLAKAISVSKTTVHRRVQEGLIRPHTNAVKPTLTEDNKRTRLEFCLSQIDPD-------TLLFSDMFNVVHIDEKWFYMCKTTTKYYLVHDEPEPTRRVKSKRFITKAMFLAAVARPR------NGFSGKIGIFPFTFIEPAKRNSKNRVAGTMVTKVDESITKEKVK 195          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig841.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9R2_9PHAE1.720e-3958.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8I6WKB7_HORVV2.040e-3953.68Uncharacterized protein n=1 Tax=Hordeum vulgare su... [more]
A0A0A9BDH3_ARUDO1.360e-3852.63Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
A0A4Q9LUD7_9MICR2.030e-3745.83Uncharacterized protein (Fragment) n=2 Tax=Hamilto... [more]
A0A6H5JGY9_9PHAE4.050e-3755.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A452XZT7_AEGTS9.330e-3752.21Uncharacterized protein n=2 Tax=Aegilops tauschii ... [more]
A0A811Q0I0_9POAL1.920e-3646.85Hypothetical protein n=2 Tax=Panicoideae TaxID=147... [more]
A0A834FW95_RHOSS2.320e-3651.09Uncharacterized protein n=3 Tax=Rhododendron simsi... [more]
UPI00098AC6DC3.550e-3648.61uncharacterized protein LOC109746020 n=3 Tax=Aegil... [more]
UPI0007F012D13.710e-3647.51uncharacterized protein LOC108203813 n=1 Tax=Daucu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig841contigP-littoralis_Contig841:49592..50580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog161934.XP_010693559.1
PFAMsInhibitor_I9,PA,Peptidase_S8
Model size989
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009888,GO:0010073,GO:0010074,GO:0016787,GO:0017171,GO:0019538,GO:0019827,GO:0032501,GO:0032502,GO:0043170,GO:0044238,GO:0048507,GO:0048856,GO:0070011,GO:0071704,GO:0098727,GO:0140096,GO:1901564
Exons1
Evalue4.48e-29
EggNOG OGsCOG1404@1|root,2RKXZ@2759|Eukaryota,37T88@33090|Viridiplantae,3GHJ6@35493|Streptophyta
DescriptionSubtilisin-like protease
Cds size567
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791708.6501236-UTR-P-littoralis_Contig841:49591..496241680791708.6501236-UTR-P-littoralis_Contig841:49591..49624Pylaiella littoralis U1_48UTRP-littoralis_Contig841 49592..49624 +
1680791708.6877213-UTR-P-littoralis_Contig841:50191..505801680791708.6877213-UTR-P-littoralis_Contig841:50191..50580Pylaiella littoralis U1_48UTRP-littoralis_Contig841 50192..50580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791708.6671789-CDS-P-littoralis_Contig841:49624..501911680791708.6671789-CDS-P-littoralis_Contig841:49624..50191Pylaiella littoralis U1_48CDSP-littoralis_Contig841 49625..50191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig841.11.1prot_P-littoralis_Contig841.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig841 49625..50191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig841.11.1

>prot_P-littoralis_Contig841.11.1 ID=prot_P-littoralis_Contig841.11.1|Name=mRNA_P-littoralis_Contig841.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=189bp
MRTTQRGIATAIGLPKTTFRRRMRELQVKPQTRHVKPLLTTKSKIERLRW
ARRWTIPTAEVPAGGTRRFSGMGNVVCVDEKWFYICNVKQRYYVRDNEPA
PRRQVQHKSHITKVMLLGAVARPRCNTTNNTDFDGKIGLYPFTRREATQR
NSRNRVAGTMVTKTVEVTKERYKKTKSSGYSRTTPVPT*
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mRNA from alignment at P-littoralis_Contig841:49592..50580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig841.11.1 ID=mRNA_P-littoralis_Contig841.11.1|Name=mRNA_P-littoralis_Contig841.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=989bp|location=Sequence derived from alignment at P-littoralis_Contig841:49592..50580+ (Pylaiella littoralis U1_48)
AACAAGGAGGCGCTTCAAAACGTCCCGCTCAAAATGCGCACCACGCAACG GGGCATAGCTACAGCGATCGGCCTGCCAAAGACGACGTTTCGTCGTCGCA TGAGAGAACTGCAGGTGAAGCCCCAGACGCGGCATGTAAAGCCGCTTCTC ACAACAAAATCCAAGATAGAACGGCTGAGGTGGGCAAGGCGCTGGACTAT TCCCACGGCGGAGGTACCTGCGGGGGGTACTCGCAGATTCAGTGGGATGG GAAACGTGGTGTGTGTTGACGAGAAGTGGTTTTACATCTGCAATGTGAAG CAGAGGTATTACGTGCGCGACAACGAGCCTGCCCCGAGACGGCAAGTCCA ACACAAGAGCCACATCACCAAGGTGATGCTTCTGGGAGCTGTTGCGCGGC CGAGGTGCAACACCACCAACAACACCGATTTCGACGGGAAGATCGGCCTG TATCCGTTCACCAGACGAGAGGCGACCCAGAGAAACAGCCGGAACAGGGT CGCCGGAACAATGGTTACGAAGACAGTGGAGGTAACCAAGGAGCGATACA AGAAGACAAAATCGTCTGGATACAGCAGGACAACGCCCGTCCCCACCTAA TCAACAACGACCCAGAGGTGAGGGCTGCAATGCAGGCGGACGGGTGGGAC ATTCGGCTTATCAGTCAGCCCGCCAATAGCCCGGACACAAACATCCTCGA TTTGTTTTTTTTTAACTCGATCCAATCCCTGCAAGACCGCACGACCCCGA GGACCGTGGATGACCTGGTGAAGGCCGTGAAGGAGGCATGGCAACAGAAT TCGGGGGTCAAACTCAACCGGGTGTGGCTCAGTCTACAGGCGTGCCTGCA GGATATCATGCTCGAGGGTGGTGACAACGATTGCAAGTTGCCGCATGTTC GCAAGGGCCGGCTCGAAACCGCGGGTACGCTGCCCTGGCAGCTGGAATGC ACGGCGGAGGCATGGGAGAAGGGTGCTGCGGCCCTGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig841:49592..50580+

>mRNA_P-littoralis_Contig841.11.1 ID=mRNA_P-littoralis_Contig841.11.1|Name=mRNA_P-littoralis_Contig841.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=567bp|location=Sequence derived from alignment at P-littoralis_Contig841:49592..50580+ (Pylaiella littoralis U1_48)
ATGCGCACCACGCAACGGGGCATAGCTACAGCGATCGGCCTGCCAAAGAC
GACGTTTCGTCGTCGCATGAGAGAACTGCAGGTGAAGCCCCAGACGCGGC
ATGTAAAGCCGCTTCTCACAACAAAATCCAAGATAGAACGGCTGAGGTGG
GCAAGGCGCTGGACTATTCCCACGGCGGAGGTACCTGCGGGGGGTACTCG
CAGATTCAGTGGGATGGGAAACGTGGTGTGTGTTGACGAGAAGTGGTTTT
ACATCTGCAATGTGAAGCAGAGGTATTACGTGCGCGACAACGAGCCTGCC
CCGAGACGGCAAGTCCAACACAAGAGCCACATCACCAAGGTGATGCTTCT
GGGAGCTGTTGCGCGGCCGAGGTGCAACACCACCAACAACACCGATTTCG
ACGGGAAGATCGGCCTGTATCCGTTCACCAGACGAGAGGCGACCCAGAGA
AACAGCCGGAACAGGGTCGCCGGAACAATGGTTACGAAGACAGTGGAGGT
AACCAAGGAGCGATACAAGAAGACAAAATCGTCTGGATACAGCAGGACAA
CGCCCGTCCCCACCTAA
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