mRNA_P-littoralis_Contig84.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig84.87.1
Unique NamemRNA_P-littoralis_Contig84.87.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig84.87.1 vs. uniprot
Match: A0A6H5KBN6_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN6_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 6.710e-48
Identity = 107/167 (64.07%), Postives = 117/167 (70.06%), Query Frame = 1
Query:    1 GIKTSGRHGGRGRRGV-RRYVVHTGQG-FVAVDYTGRGIPAEPLALSAADGMNACIFAYGQTGSGKAHTMIGDAKGGEMAGISCRTMDKLLQVLELRCRQQAEYVFTVKVAMLEIYNEDVRELLSDPSSLPTSGGXXXXEGDGRIGTDG--NAGKLEIFRYQDGMVQ 489
            G+KTS RHGG G     R + +    G     +   R +  EPLALSAADGMNACIFAYGQTGSGK HTMIGDAKGGEMAGIS RTM+KL QVLELR RQQ +YVFTVKVAMLEIYNEDVR+LLSDP  LP+  G          G DG  +  KLEI R QDGMVQ
Sbjct:  725 GVKTSSRHGGGGGASSWRSFALDKALGPSTTQEEVFRQV--EPLALSAADGMNACIFAYGQTGSGKTHTMIGDAKGGEMAGISYRTMNKLFQVLELRQRQQPDYVFTVKVAMLEIYNEDVRDLLSDP--LPSGSGGVGGXXXXSTGGDGAVDGSKLEIRRDQDGMVQ 887          
BLAST of mRNA_P-littoralis_Contig84.87.1 vs. uniprot
Match: D7FTD0_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD0_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 1.230e-47
Identity = 111/169 (65.68%), Postives = 121/169 (71.60%), Query Frame = 1
Query:    1 GIKTSGRHGGRGRRGV-RRYVVHTGQG-FVAVDYTGRGIPAEPLALSAADGMNACIFAYGQTGSGKAHTMIGDAKGGEMAGISCRTMDKLLQVLELRCRQQAEYVFTVKVAMLEIYNEDVRELLSDPSSLPTSGGXXXXEGDGRIGTDGNAG----KLEIFRYQDGMVQ 489
            G+KTSGRHGG G     R + +    G     +   R +  EPLALSAADGMNACIFAYGQTGSGK HTMIGDAKGGEMAGIS RTM+KL QVLELR RQQ +YVFTVKVAMLEIYNEDVR+LLSDP  LP+  GXXXX       T G+      KLEI R QDGMVQ
Sbjct:  402 GVKTSGRHGGGGGASSWRSFALDKALGPSTTQEEVFRQV--EPLALSAADGMNACIFAYGQTGSGKTHTMIGDAKGGEMAGISYRTMNKLFQVLELRQRQQPDYVFTVKVAMLEIYNEDVRDLLSDP--LPSGSGXXXXXXXXXXSTGGDGAVDGSKLEIRRDQDGMVQ 566          
BLAST of mRNA_P-littoralis_Contig84.87.1 vs. uniprot
Match: A0A1Z5JLQ2_FISSO (Kinesin family member C2/C3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLQ2_FISSO)

HSP 1 Score: 88.6 bits (218), Expect = 2.170e-17
Identity = 56/142 (39.44%), Postives = 78/142 (54.93%), Query Frame = 1
Query:  118 EPLALSAADGMNACIFAYGQTGSGKAHTMIGDAKGGEMAGISCRTMDKLLQVLELRCRQQ------------------AEYVFTVKVAMLEIYNEDVRELLSDPSSLPTSGGXXXXEGDGRIGTDGNAGKLEIFRYQDGMVQ 489
            EPLALS  DG NACIFAYGQTGSGK  TM G  + G+  GIS RT+ K+  +L LR +QQ                    + FT++V MLEIYN+++ +LL       T+G     + +G +   G +  L+I R  +G ++
Sbjct:  764 EPLALSVVDGFNACIFAYGQTGSGKTFTMEGVRENGQF-GISYRTIQKIFHLLNLRAQQQRAAEMFVGQEAEDDPAKEVSFQFTIEVGMLEIYNDEIYDLLG------TAGASMAEKKEGAMKAGGKS-SLDIRRTPEGRIE 897          
BLAST of mRNA_P-littoralis_Contig84.87.1 vs. uniprot
Match: A0A7S1VET9_9STRA (Kinesin-like protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VET9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.340e-17
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  118 EPLALSAADGMNACIFAYGQTGSGKAHTMIGDAKGGEMAGISCRTMDKLLQVLELRCRQQ-------------AEYVFTVKVAMLEIYNEDVRELLSDPSSLPTSGGXXXXEGDGRIGTDGNAGKLEIFRYQDGMVQ 489
            EPLALS  DG NACIFAYGQTGSGK +TM G    G   GIS RT+ K+  +L LR +QQ             AE+ F +++ MLEIYN++V +LL   S  P +                NA +L+I + + G V+
Sbjct:  427 EPLALSVVDGYNACIFAYGQTGSGKTYTMEGVESNGNY-GISYRTIQKIFHLLNLRTQQQKAAALLKGGAESSAEFTFKLELGMLEIYNDEVYDLLG--SDKPRA----------------NADRLDIRKNKSGRVE 544          
BLAST of mRNA_P-littoralis_Contig84.87.1 vs. uniprot
Match: A0A482ULD1_9ARCH (Kinesin motor domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ULD1_9ARCH)

HSP 1 Score: 83.2 bits (204), Expect = 9.670e-16
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  118 EPLALSAADGMNACIFAYGQTGSGKAHTMIGDAKGGEMAGISCRTMDKLLQVLELRCRQQAEYVFTVKVAMLEIYNEDVRELLSDPSSLPTSGGXXXXEGDGRIGTDGNAGKLEI 462
            +PL  SA DG +ACIFAYGQTGSGK  TM G+A      GI  RT+D L   +E R     +Y ++++V+M+EIYNE+V +LL++ + LP  GG     GD     +G+AG +EI
Sbjct:  124 QPLVTSALDGFHACIFAYGQTGSGKTFTMEGNAAA---RGIYYRTLDSLFDQIEERA---GDYAYSLRVSMVEIYNENVMDLLAE-APLPGMGG-----GD----EEGSAGGMEI 222          
BLAST of mRNA_P-littoralis_Contig84.87.1 vs. uniprot
Match: B8BVK3_THAPS (Kinesin-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVK3_THAPS)

HSP 1 Score: 82.8 bits (203), Expect = 1.060e-15
Identity = 44/85 (51.76%), Postives = 62/85 (72.94%), Query Frame = 1
Query:  118 EPLALSAADGMNACIFAYGQTGSGKAHTMIGDAKGGEMAGISCRTMDKLLQVLELRCRQQAEYVFTVKVAMLEIYNEDVRELLSD 372
            EP+ALS  DG N+CIFAYGQTGSGK +TM GD +  +  GIS RT+ KL  +L+ R    + + ++++V MLEIYN++V +LLS+
Sbjct:   75 EPMALSVIDGYNSCIFAYGQTGSGKTYTMEGDKENNQY-GISQRTIHKLFSMLQDR---PSRFEYSIEVGMLEIYNDEVYDLLSN 155          
BLAST of mRNA_P-littoralis_Contig84.87.1 vs. uniprot
Match: S4RZ05_PETMA (Kinesin motor domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RZ05_PETMA)

HSP 1 Score: 82.8 bits (203), Expect = 1.300e-15
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  121 PLALSAADGMNACIFAYGQTGSGKAHTMIGDAKGGEMAGISCRTMDKLLQVLELRCRQQAEYVFTVKVAMLEIYNEDVRELLSDPSSLP 387
            PL  S  DG N CI AYGQTGSGK HTM+G +      G++ R++ +LL +    C+++    +T+K++MLEIYNE VR+LL  P S P
Sbjct:  123 PLITSCVDGYNVCILAYGQTGSGKTHTMMGTSNA---PGVNVRSVKELLNI----CKERHNVKYTLKISMLEIYNETVRDLLGKPGSGP 204          
BLAST of mRNA_P-littoralis_Contig84.87.1 vs. uniprot
Match: A0A1E7EVR4_9STRA (Kinesin-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVR4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.040e-15
Identity = 53/141 (37.59%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  118 EPLALSAADGMNACIFAYGQTGSGKAHTMIGDAKGGEMAGISCRTMDKLLQVLELRCRQQ-----------------AEYVFTVKVAMLEIYNEDVRELLSDPSSLPTSGGXXXXEGDGRIGTDGNAGKLEIFRYQDGMVQ 489
            EP+ALS  DG NACIFAYGQTGSGK +TM G A+  +  GIS RT+ K+  +L L+ +Q+                 A +V++V++ MLEIYN++  +LL        S G    E        G    L+I R ++G ++
Sbjct:   71 EPIALSVVDGFNACIFAYGQTGSGKTYTMEGVAENNQR-GISYRTIQKVFHLLTLKQQQEKTNSILFKSQEEREEAPANFVYSVEIGMLEIYNDECYDLLG-------SSGASLEEKRKEAQKAGGKSSLDIRRSKEGRIE 203          
BLAST of mRNA_P-littoralis_Contig84.87.1 vs. uniprot
Match: UPI00140283C0 (kinesin-like protein KIFC3 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI00140283C0)

HSP 1 Score: 82.8 bits (203), Expect = 2.100e-15
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  121 PLALSAADGMNACIFAYGQTGSGKAHTMIGDAKGGEMAGISCRTMDKLLQVLELRCRQQAEYVFTVKVAMLEIYNEDVRELLSDPSSLP 387
            PL  S  DG N CI AYGQTGSGK HTM+G +      G++ R++ +LL +    C+++    +T+K++MLEIYNE VR+LL  P S P
Sbjct:  510 PLITSCVDGYNVCILAYGQTGSGKTHTMMGTSNA---PGVNVRSVKELLNI----CKERHNVKYTLKISMLEIYNETVRDLLGKPGSGP 591          
BLAST of mRNA_P-littoralis_Contig84.87.1 vs. uniprot
Match: K0SQ07_THAOC (Kinesin-like protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQ07_THAOC)

HSP 1 Score: 81.3 bits (199), Expect = 7.140e-15
Identity = 50/100 (50.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  118 EPLALSAADGMNACIFAYGQTGSGKAHTMIGDAKGGEMAGISCRTMDKLLQVLE------LRCRQQAEYVFTVKVAMLEIYNEDVRELLSDPSSLPTSGG 399
            EPLALS  +G NACIFAYGQTGSGK  TM GD       GIS RT+ K+  +LE      L  +    + + VK+ MLEIYN++V +LL DPS +  S G
Sbjct:  131 EPLALSVIEGYNACIFAYGQTGSGKTFTMEGDEV---QQGISQRTIKKIFTLLEEKSIRHLSQQHPDRFEYIVKIGMLEIYNDEVYDLL-DPSFVAASSG 226          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBN6_9PHAE6.710e-4864.07Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
D7FTD0_ECTSI1.230e-4765.68Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A1Z5JLQ2_FISSO2.170e-1739.44Kinesin family member C2/C3 n=2 Tax=Fistulifera so... [more]
A0A7S1VET9_9STRA5.340e-1741.61Kinesin-like protein n=1 Tax=Grammatophora oceanic... [more]
A0A482ULD1_9ARCH9.670e-1646.09Kinesin motor domain-containing protein (Fragment)... [more]
B8BVK3_THAPS1.060e-1551.76Kinesin-like protein (Fragment) n=1 Tax=Thalassios... [more]
S4RZ05_PETMA1.300e-1547.19Kinesin motor domain-containing protein n=1 Tax=Pe... [more]
A0A1E7EVR4_9STRA2.040e-1537.59Kinesin-like protein n=1 Tax=Fragilariopsis cylind... [more]
UPI00140283C02.100e-1547.19kinesin-like protein KIFC3 n=1 Tax=Petromyzon mari... [more]
K0SQ07_THAOC7.140e-1550.00Kinesin-like protein n=1 Tax=Thalassiosira oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:472306..474514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTD0
PFAMsKinesin
Model size491
Max annot lvl2759|Eukaryota
KEGG koko:K10406
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.01e-48
EggNOG OGsCOG5059@1|root,KOG0239@2759|Eukaryota
Descriptionmicrotubule motor activity
Cds size489
COG categoryZ
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791705.5113873-CDS-P-littoralis_Contig84:472306..4724981680791705.5113873-CDS-P-littoralis_Contig84:472306..472498Pylaiella littoralis U1_48CDSP-littoralis_Contig84 472307..472498 -
1680791705.5282028-CDS-P-littoralis_Contig84:472890..4730691680791705.5282028-CDS-P-littoralis_Contig84:472890..473069Pylaiella littoralis U1_48CDSP-littoralis_Contig84 472891..473069 -
1680791705.5448208-CDS-P-littoralis_Contig84:474396..4745141680791705.5448208-CDS-P-littoralis_Contig84:474396..474514Pylaiella littoralis U1_48CDSP-littoralis_Contig84 474397..474514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.87.1prot_P-littoralis_Contig84.87.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig84 472307..474514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig84.87.1

>prot_P-littoralis_Contig84.87.1 ID=prot_P-littoralis_Contig84.87.1|Name=mRNA_P-littoralis_Contig84.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=163bp
GIKTSGRHGGRGRRGVRRYVVHTGQGFVAVDYTGRGIPAEPLALSAADGM
NACIFAYGQTGSGKAHTMIGDAKGGEMAGISCRTMDKLLQVLELRCRQQA
EYVFTVKVAMLEIYNEDVRELLSDPSSLPTSGGGGGGEGDGRIGTDGNAG
KLEIFRYQDGMVQ
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mRNA from alignment at P-littoralis_Contig84:472306..474514-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig84.87.1 ID=mRNA_P-littoralis_Contig84.87.1|Name=mRNA_P-littoralis_Contig84.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2209bp|location=Sequence derived from alignment at P-littoralis_Contig84:472306..474514- (Pylaiella littoralis U1_48)
GGGATCAAGACCTCAGGAAGGCACGGAGGAAGGGGGCGGCGGGGCGTCCG CCGGTATGTTGTTCACACTGGACAAGGCTTTGTGGCCGTCGACTACACAG GAAGAGGTATTCCAGCAGGTGCGCGAGAGAGAGAGGGAAAGAGAGACAAA CGGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGA GAGGGATGGTGATTGATTTATGATTTCTCTTACGTACTGACTGCTGCATG CAGCTTTGCGGGGGTCGTGTATGATATGATATTACCTTAGGTTCTTCGTA TTCCACGCAACGCAACACCACTGGGGAAGGTTTTCGTCGCTAAACCCCTC CCGTGTTTTTCTGCGGGAGATTTCATAACATAAAACCACTGAGAAGGTAG TCGTCGCTCGATTCCGCTCAATCCTTCCCGTGTCAGGGGTCAGGGGTTGC CGGAAAGGGGATGTCATTGGAAACATGCCATCGAGAGATTTGTTTTTGGA CAGGTACTGTTTGTATTTTTATGCGGATACTCTTGTTGGCTCTTTGTTTC GTTGAAAAAGCTTAACTGTATTAGACAGTTTGGAAACCCACTGGGTGTTC GTTAGATGGGCTTAACCACGAGACCAGAGTCATCTCACGAACATTGGGTG CAGTAGATGAGACGTAGCAGAGGCGTGTGTTGTTGCCACGAAAACAAAAG CACCAAGAGGTATAATATGCACCGCACCCCAGGGGGCGTTCTATTTTGTC GCGGAGCAATGCCGTATACAGCTGGACCTTTAAAACCCTGAAACAGTTGT TTACCTCCGAGATCCCGCTCGTTGCGTTGAGATTCCGTACGTATGCGCTT TGGCATGGATGCACAGCGTGCGTGCCCGCCCAAGGATAGCAGGACCAGTG CGTAAGTGTTGCCATCTCATTTTTTGTCAACGGTTGGGTGTATGGGTTGG GCGCCCCAGCTGGTGTCGGCTAGCTGGTTGGAAAAAGAGGAGTAGGTTGA GGTCAACACAGGAGTGATATATATATATATTTTTTTTTCTTTTAGTCTGC TCACGTATGATATGTAGCTCGTCGTTTGTGTTATGAGAGGGGATTACTTG CTGGGGTGTGCGCATCTCCATCGTGCTGCCGCTGTGTTTGGGTGGGAGCT TGTTCGTCTTTCATCTTGGCTTCGGAGTCATGGGCCGGCAATGATGGCTG GGTCCCGGTAGACAATATACAGGGGGCCGGCAATGATGGCTGGGTCCCGG TAGACAATATACAGGGGGGGGGTTAGGCGTCCGCCCGTGGTGAATGGCGG CGAAACTAGTCATCTAAAGTTAGCCTGGACATCTAGCTCTCTGTCTGCCT CGTCTCACACGCTGACTTTCTCGGTTCACTTTTGCTTGATCGATTTCCAT GTTGTCGATGCCGGTGTCGGTGTCGATGTCGATATCAACACGTAGAGCCG CTCGCGCTCTCGGCCGCGGACGGCATGAACGCCTGCATCTTCGCCTACGG GCAGACCGGCTCGGGCAAGGCGCACACCATGATAGGAGACGCCAAGGGTG GCGAGATGGCCGGGATTAGCTGCCGCACCATGGACAAGTTGTTACAAGTT CTGGAGCTCAGGTGTCGCCAGCAGGTAGTGCATAGTGCATGCGTCCCACG CCCTTGGCGGGCTAACCCTTGCTCCCACCCCCCCACCCACCTCTGTTCTC ATTTAAGGGTGTGCGTTGTTGTTCCCCCTGGTGGTGGGAACCTTGTGCAT TTAGAGGCAGACGTGGCGGTGAGGAAAGGCAGTACTGCTACAGGAGCATC GAGGCAGGCATGGGTTCGCCATGTAGGCAGTGGATTTTCTGTCTGTGCCC CTCTCGTATGATTAAGCGCTAAAGGAGACTCACGTGACTGACGTTGGTTT TTGTTGCGAGTTCGATTTTTTATCTATCATATGATATGCTCTAATCCCTC CCACCCTGCTCTTTCCTTTGGGGTACTGCTGAACAGCAGTATCCCGACAC ACACACATGCACGCAGGCGGAGTACGTCTTCACAGTGAAGGTTGCAATGC TCGAGATCTACAACGAGGACGTGCGAGAACTGCTGTCGGATCCGTCATCT CTGCCGACAAGCGGCGGCGGCGGCGGCGGCGAAGGCGATGGACGGATAGG GACAGACGGAAACGCAGGGAAGCTGGAAATCTTCCGATATCAGGATGGCA TGGTGCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig84:472306..474514-

>mRNA_P-littoralis_Contig84.87.1 ID=mRNA_P-littoralis_Contig84.87.1|Name=mRNA_P-littoralis_Contig84.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig84:472306..474514- (Pylaiella littoralis U1_48)
GGGATCAAGACCTCAGGAAGGCACGGAGGAAGGGGGCGGCGGGGCGTCCG
CCGGTATGTTGTTCACACTGGACAAGGCTTTGTGGCCGTCGACTACACAG
GAAGAGGTATTCCAGCAGAGCCGCTCGCGCTCTCGGCCGCGGACGGCATG
AACGCCTGCATCTTCGCCTACGGGCAGACCGGCTCGGGCAAGGCGCACAC
CATGATAGGAGACGCCAAGGGTGGCGAGATGGCCGGGATTAGCTGCCGCA
CCATGGACAAGTTGTTACAAGTTCTGGAGCTCAGGTGTCGCCAGCAGGCG
GAGTACGTCTTCACAGTGAAGGTTGCAATGCTCGAGATCTACAACGAGGA
CGTGCGAGAACTGCTGTCGGATCCGTCATCTCTGCCGACAAGCGGCGGCG
GCGGCGGCGGCGAAGGCGATGGACGGATAGGGACAGACGGAAACGCAGGG
AAGCTGGAAATCTTCCGATATCAGGATGGCATGGTGCAG
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