mRNA_P-littoralis_Contig84.113.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig84.113.1
Unique NamemRNA_P-littoralis_Contig84.113.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig84.113.1 vs. uniprot
Match: D8LGV3_ECTSI (2OG-Fe(II) oxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV3_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.460e-8
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 3 
Query:    3 AGVCAGYFNCVLLNWYRDGGDYMGWHS 83
            AGV  GYFNCVLLNWYRDG DYMGWHS
Sbjct:  178 AGVDPGYFNCVLLNWYRDGADYMGWHS 204
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BLAST of mRNA_P-littoralis_Contig84.113.1 vs. uniprot
Match: A0A3E0DN89_9GAMM (Alkylated DNA repair dioxygenase AlkB n=2 Tax=Marinomonas pollencensis TaxID=491954 RepID=A0A3E0DN89_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 9.020e-6
Identity = 19/26 (73.08%), Postives = 21/26 (80.77%), Query Frame = 3 
Query:   24 FNCVLLNWYRDGGDYMGWHSGGNTLL 101
            FNCVLLNWY+DG DYMGWHS    +L
Sbjct:   53 FNCVLLNWYQDGSDYMGWHSDSEPVL 78
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BLAST of mRNA_P-littoralis_Contig84.113.1 vs. uniprot
Match: UPI001F0AB750 (alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Marinomonas flavescens TaxID=2529379 RepID=UPI001F0AB750)

HSP 1 Score: 51.2 bits (121), Expect = 2.320e-5
Identity = 19/26 (73.08%), Postives = 20/26 (76.92%), Query Frame = 3 
Query:   24 FNCVLLNWYRDGGDYMGWHSGGNTLL 101
            FNCVLLNWY+DG DYMGWHS     L
Sbjct:   71 FNCVLLNWYQDGDDYMGWHSDSEVTL 96
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGV3_ECTSI2.460e-888.892OG-Fe(II) oxygenase n=1 Tax=Ectocarpus siliculosu... [more]
A0A3E0DN89_9GAMM9.020e-673.08Alkylated DNA repair dioxygenase AlkB n=2 Tax=Mari... [more]
UPI001F0AB7502.320e-573.08alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:580358..580738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size381
Hectar predicted targeting categorysignal peptide
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791702.1968808-UTR-P-littoralis_Contig84:580357..5804251680791702.1968808-UTR-P-littoralis_Contig84:580357..580425Pylaiella littoralis U1_48UTRP-littoralis_Contig84 580358..580425 +
1680791702.2203257-UTR-P-littoralis_Contig84:580725..5807381680791702.2203257-UTR-P-littoralis_Contig84:580725..580738Pylaiella littoralis U1_48UTRP-littoralis_Contig84 580726..580738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791702.210426-CDS-P-littoralis_Contig84:580425..5807251680791702.210426-CDS-P-littoralis_Contig84:580425..580725Pylaiella littoralis U1_48CDSP-littoralis_Contig84 580426..580725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.113.1prot_P-littoralis_Contig84.113.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig84 580426..580725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig84.113.1

>prot_P-littoralis_Contig84.113.1 ID=prot_P-littoralis_Contig84.113.1|Name=mRNA_P-littoralis_Contig84.113.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MGWHSGGNTLLFLLLSPSNVHTPVHVIFHPPLHSTNINIISSTHIIQLLR
ICTSMIVHTTRTYRLECCTHFIDYLAILLLLAGGSVRFHYPTLIAFTLE*
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mRNA from alignment at P-littoralis_Contig84:580358..580738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig84.113.1 ID=mRNA_P-littoralis_Contig84.113.1|Name=mRNA_P-littoralis_Contig84.113.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig84:580358..580738+ (Pylaiella littoralis U1_48)
CGGCCGGGGTGTGCGCCGGGTACTTCAATTGCGTCCTCCTGAACTGGTAT
CGGGACGGAGGGGACTACATGGGATGGCACTCGGGTGGGAATACCTTGTT
GTTTTTGCTGCTTTCGCCATCCAATGTGCACACGCCCGTACATGTGATAT
TTCACCCTCCTCTCCACAGTACAAATATTAACATCATTTCATCTACACAT
ATCATACAGCTGCTACGAATATGTACTTCCATGATTGTTCATACCACCAG
AACGTACCGTCTCGAATGCTGCACTCATTTTATCGACTATCTTGCCATTC
TGCTCTTGCTTGCTGGAGGGTCGGTCCGGTTTCACTATCCTACACTCATC
GCGTTTACACTTGAATAAAATTAAATTTGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig84:580358..580738+

>mRNA_P-littoralis_Contig84.113.1 ID=mRNA_P-littoralis_Contig84.113.1|Name=mRNA_P-littoralis_Contig84.113.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig84:580358..580738+ (Pylaiella littoralis U1_48)
ATGGGATGGCACTCGGGTGGGAATACCTTGTTGTTTTTGCTGCTTTCGCC
ATCCAATGTGCACACGCCCGTACATGTGATATTTCACCCTCCTCTCCACA
GTACAAATATTAACATCATTTCATCTACACATATCATACAGCTGCTACGA
ATATGTACTTCCATGATTGTTCATACCACCAGAACGTACCGTCTCGAATG
CTGCACTCATTTTATCGACTATCTTGCCATTCTGCTCTTGCTTGCTGGAG
GGTCGGTCCGGTTTCACTATCCTACACTCATCGCGTTTACACTTGAATAA
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