mRNA_P-littoralis_Contig84.107.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig84.107.1
Unique NamemRNA_P-littoralis_Contig84.107.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig84.107.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 1.390e-62
Identity = 131/317 (41.32%), Postives = 177/317 (55.84%), Query Frame = 1
Query:    1 EPEKMEKFPKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFVRRPGSTSR-DQRSSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 771
            +P +   F  + N+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L   A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I+TGG+ EK R+T+VLAV  DG+KV PRII+KG PF                           R    +PA G+S GVQ+ SW D  + + W++  +  RP + S   QR  +LVLDDF+CH++E +   L   A T+V+++ GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:   20 KPTEALAFKVKINSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSG-KLKPPERG 334          
BLAST of mRNA_P-littoralis_Contig84.107.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.620e-62
Identity = 133/317 (41.96%), Postives = 178/317 (56.15%), Query Frame = 1
Query:    1 EPEKMEKFPKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFVRRPGSTSR-DQRSSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 771
            +PE+   F  +FN+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L + A E                               +F  L NMDQTP+Q E+P +TT+EKTG K A I+TGG+ EK R+T+VLAV  DG+KV PRII+KG PF                           R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QR  +LVLDDF+CH++E F   L   A T+V+ + G LTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:   20 KPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSG-KLKPPERG 334          
BLAST of mRNA_P-littoralis_Contig84.107.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 1.460e-60
Identity = 130/317 (41.01%), Postives = 176/317 (55.52%), Query Frame = 1
Query:    1 EPEKMEKFPKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFVRRPGSTSR-DQRSSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 771
            +PE+   F  +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KL  +L + A E                               +F  + NMDQ P+Q EMP +TT++KTG K A I+TGG  EK R+T+VLAV  DG+KV PRII++G PF                           R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QR  +LVLDDF+CH +E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:  214 KPEEAIDFKFKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSG-KLKPPERG 529          
BLAST of mRNA_P-littoralis_Contig84.107.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 2.750e-56
Identity = 125/297 (42.09%), Postives = 163/297 (54.88%), Query Frame = 1
Query:    1 EPEKMEKFPKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFVRRP--GSTSRDQRSSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 714
            +PE+      +F +WY RF KR++FSIRR+TSVGQK P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+E TG K A I TGG+ EK R+T+ LAV  DG+KV  RII+KG PF                           R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGL P+ QPLDR +NK+ KR +R  YT+
Sbjct:  174 KPEEALALNSKFKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGK-EKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTA 468          
BLAST of mRNA_P-littoralis_Contig84.107.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 2.980e-56
Identity = 131/325 (40.31%), Postives = 174/325 (53.54%), Query Frame = 1
Query:    1 EPEKMEKFPKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFVRRP--GSTSR-------DQRSSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 771
            +PE+   F  +FN+WY RF KR+ FSIRR+ SVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+E TG K A I+TGG+ EK R+T+VLAV  DG+ V P II+KG PF                           R   G+PA G+S GVQ+ SW    + + W+   +   P  GS  R        QR  +LVLDDF+CH++E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:  174 KPEEALAFKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGK-EKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSAPAVADARSG-KLKPPERG 496          
BLAST of mRNA_P-littoralis_Contig84.107.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 3.160e-55
Identity = 125/285 (43.86%), Postives = 157/285 (55.09%), Query Frame = 1
Query:   22 FPKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFVRRP--GSTSRDQRSSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVR 699
            F  +F  WY+ F +RH FSIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T  LAV  DG KV  RII+KG PF                           RT FGYP  G+   VQ+ SWCD  +   W+++ +  RP  GS  + QR S+LVLDDFRCHR E F K L     T V+++ GGLTP+ QPLDR +NKE KR +R
Sbjct:   96 FRTKFKNWYHCFRERHGFSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGK-EKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIK-QRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMR 378          
BLAST of mRNA_P-littoralis_Contig84.107.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 4.520e-54
Identity = 125/322 (38.82%), Postives = 162/322 (50.31%), Query Frame = 1
Query:    1 EPEKMEKFPKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGET-------------------------EKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFVRRP--GSTSRDQRSSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 714
            +PE+   F  +F +WY RF KR++FSIRR+TSVG + P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I TG                            EK R+T+ LAV  DG KV  RII+KG PF                           R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+
Sbjct:  107 KPEEALAFKSKFKSWYQRFRKRNKFSIRRRTSVGIRLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA 427          
BLAST of mRNA_P-littoralis_Contig84.107.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 3.720e-51
Identity = 120/292 (41.10%), Postives = 159/292 (54.45%), Query Frame = 1
Query:   22 FPKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFVRRP--GSTSRDQRSSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI 720
            F  +F  WY+RF +RH  SIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T+ LAV  DG KV  RII+KG PF                           +T+FGYP  G+S GVQ+ SW D  +   W+++ +  RP  GS  + QR S+LVLDDFR +              T V+++ GGLTP+ QPLDR ++KE KR +R RYT ++
Sbjct:  200 FRTKFKNWYHRFRERHGLSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGK-EKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIK-QRHSILVLDDFRTN--------------TTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYM 475          
BLAST of mRNA_P-littoralis_Contig84.107.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 9.270e-51
Identity = 124/309 (40.13%), Postives = 164/309 (53.07%), Query Frame = 1
Query:    1 EPEKMEKFPKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------RTSFGYPA-----------GGISLGVQ--------------KSSWCDGTQSDEWVTQDFVRRPGSTSR-DQRSSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 714
            +PE+   F  +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I+TGGE EK R+T+VLAV  DG+KV PRII+KG PF               + S  +             GG    V               + SW D  + + W+   +  RP + S   QR  +LVLDDF+CH++E F   L   AKT V+ + GGLT + QPLDR +NK+ KR +R +YT+
Sbjct:  202 KPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGE-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGAKT-VIFIPGGLTSLLQPLDRMLNKQMKRLLRGKYTA 508          
BLAST of mRNA_P-littoralis_Contig84.107.1 vs. uniprot
Match: A0A6H5JB72_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB72_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.710e-46
Identity = 118/352 (33.52%), Postives = 157/352 (44.60%), Query Frame = 1
Query:   22 FPKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF-----------------------------------------------------------------------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFVRRPGSTSRDQRSSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI 720
            F  +F  W++RF +R   SIRR T+VGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T+ LAV  DG KV  +II+KG PF                                                                                         RT FGYP  G+S GVQ+ +WCD  +   W+++ +             S+LVLDDFRCHR E F + L     T+V+++ GGLTP+ QPLDR +NKE KR +R RYT ++
Sbjct:  122 FKTKFKNWHHRFRERRGVSIRRHTNVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRHPPAPDESPIKGKDLSPAQLESVAAEVFEELGNMDQTPVQQEMPVETTLEKRGAKDARISTGGK-EKDRFTLCLAVMADGGKVPLQIIFKGKPFIPPSTAGRGRNTQPRKGSIAAESLPANRTKFGYPKDRFTLCLAVMADGGKVPLQIIFKGKPFIPPSTAGRGRNTQPRKGSIAAESLPANRTKFGYPVSGMSFGVQEKNWCDARECILWLSESW-------------SILVLDDFRCHRSESFIEDLRRRTNTIVILIPGGLTPLFQPLDRMLNKEMKRLMRGRYTQYM 459          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig84.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUK2_9PHAE1.390e-6241.32DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE1.620e-6241.96DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE1.460e-6041.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8Y4_9PHAE2.750e-5642.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTG5_9PHAE2.980e-5640.31DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE3.160e-5543.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KE45_9PHAE4.520e-5438.82DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE3.720e-5141.10DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE9.270e-5140.13DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JB72_9PHAE1.710e-4633.52DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig84contigP-littoralis_Contig84:564829..566411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size878
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categorymitochondrion
Exons4
Evalue2.72e-46
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
DescriptionDNA binding
Cds size777
COG categoryCH
BRITEko00000,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig84.107.1prot_P-littoralis_Contig84.107.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig84 564841..566322 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791706.2738142-UTR-P-littoralis_Contig84:564828..5648401680791706.2738142-UTR-P-littoralis_Contig84:564828..564840Pylaiella littoralis U1_48UTRP-littoralis_Contig84 564829..564840 +
1680791706.3483145-UTR-P-littoralis_Contig84:566322..5664111680791706.3483145-UTR-P-littoralis_Contig84:566322..566411Pylaiella littoralis U1_48UTRP-littoralis_Contig84 566323..566411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791706.302975-CDS-P-littoralis_Contig84:564840..5650171680791706.302975-CDS-P-littoralis_Contig84:564840..565017Pylaiella littoralis U1_48CDSP-littoralis_Contig84 564841..565017 +
1680791706.3128617-CDS-P-littoralis_Contig84:565122..5652391680791706.3128617-CDS-P-littoralis_Contig84:565122..565239Pylaiella littoralis U1_48CDSP-littoralis_Contig84 565123..565239 +
1680791706.3257248-CDS-P-littoralis_Contig84:565761..5658481680791706.3257248-CDS-P-littoralis_Contig84:565761..565848Pylaiella littoralis U1_48CDSP-littoralis_Contig84 565762..565848 +
1680791706.3356657-CDS-P-littoralis_Contig84:565926..5663221680791706.3356657-CDS-P-littoralis_Contig84:565926..566322Pylaiella littoralis U1_48CDSP-littoralis_Contig84 565927..566322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig84.107.1

>prot_P-littoralis_Contig84.107.1 ID=prot_P-littoralis_Contig84.107.1|Name=mRNA_P-littoralis_Contig84.107.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=259bp
MEKFPKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRS
SLREHAQEAIFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEK
LRYTVVLAVRGDGQKVRPRIIYKGNPFRTSFGYPAGGISLGVQKSSWCDG
TQSDEWVTQDFVRRPGSTSRDQRSSVLVLDDFRCHREERFQKKLMDLAKT
LVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYGRSGQKVTAP
SRGWSRRG*
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mRNA from alignment at P-littoralis_Contig84:564829..566411+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig84.107.1 ID=mRNA_P-littoralis_Contig84.107.1|Name=mRNA_P-littoralis_Contig84.107.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1583bp|location=Sequence derived from alignment at P-littoralis_Contig84:564829..566411+ (Pylaiella littoralis U1_48)
GAGCCGGAGAAGATGGAAAAATTTCCGAAGCGTTTCAACGCCTGGTACTA CAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAGACGAGCGTGG GGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGCATTCATCCAG AAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCGTTCTCTTGGA GAGGGCAGCCCAGGCAGCGAAGGACGGAGGGACCGTTGAGATCGAGATGG ACGTCATCGCAACTGCGGAGGAACTTCTGGCTGTTCAGGGCAAGATCTTC GCCCTTCTGTACAACATGGACCAGACCCCGATCCAGGCTGAGATGCCGCC GGACACCACGGTGGAGAAGACTGGTACGAAGAGCGCTTGCATCACGACAG GAGGTGAGACGGTGTACTAAAGGTATTTCGATTGTTGAAATTCAGTTCAA ACCAACATGGTGGAGATTTTCTGACGATGGAACACGCGGGGTATTTCAAA TTTGCCGACGGCGGAAAAACGGGGAATTATAATATTTTGCATTGCTTCTG CCGTCACGTGCACGCTTTCGTTCTTCTCTTGCCTGCAAGTACGGTACGTA CTGCTGTATCGCCTGTCTCTCTTCGAACTACCGGTACACAGCGATGAAAT TATTCATATGGTATTCCGCTGAAGTATTTTTTTTAATATTCATATGTTTT GGGGGGCAATATGTATTTTACCGTATACACCGGAGTTTGTTTTTATTTTA CTTTCTATGTTGTGGTAGGCATTACACCCCAGGAGTTAAAGGTGTGTGTT TGTTTTTTATTATTATTTATTTTTTGTTTGTTGTGGCAGGCAATACGATT AATAATTGTACTGCTTTGCGGAGTATTTTCTTTTAACACAATTTCCTTTG TTTGCATACGCCCCAATTTTCGCACCAGGCAAGGAGAAGCTGCGGTACAC CGTGGTGCTAGCTGTCCGGGGTGATGGACAGAAGGTGCGGCCGCGCATCA TCTACAAGGGGAACCCTTTTGTCGGGGGTACCAACAAGTCAGGCTCAGCC AAGAAGCCTGGCAAGAACAGCCTGTCGTACGAGCACCTCCCAGACAAGCG GACGAGCTTCGGCTACCCGGCTGGCGGCATCAGCCTCGGGGTGCAGAAGT CGTCGTGGTGCGACGGCACCCAGTCCGACGAGTGGGTAACCCAGGACTTC GTGCGCCGCCCAGGGTCTACCTCCAGAGATCAGCGTTCCAGCGTTCTCGT GCTCGACGACTTCAGGTGCCACCGGGAAGAGAGGTTCCAAAAGAAGCTAA TGGACCTGGCCAAGACGCTGGTGGTGATGCTTGGTGGAGGGCTGACCCCG GTGTGCCAGCCGCTCGACCGGAACATCAACAAGGAGTTCAAGCGAGGTGT TCGGGCCAGGTACACCAGCTGGATCCGGGACAACTACGGGCGCTCGGGGC AGAAGGTGACCGCGCCGAGCAGGGGCTGGTCGCGACGTGGGTAAAGGAGG TGTGGGACAACATCTCGGAGCGGACCATCCGCTCGTGCTTCAAGGTCTGC GGTCTCACCCTCAACCTCGACGGAAGCGAGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig84:564829..566411+

>mRNA_P-littoralis_Contig84.107.1 ID=mRNA_P-littoralis_Contig84.107.1|Name=mRNA_P-littoralis_Contig84.107.1|organism=Pylaiella littoralis U1_48|type=CDS|length=777bp|location=Sequence derived from alignment at P-littoralis_Contig84:564829..566411+ (Pylaiella littoralis U1_48)
ATGGAAAAATTTCCGAAGCGTTTCAACGCCTGGTACTACAGGTTCCTCAA
GAGGCACCGGTTCTCGATCCGACGCAAGACGAGCGTGGGGCAGAAGAAGC
CGGAAGGATGGGAGGGCAAGGCGTGGGCATTCATCCAGAAGCTTCGCTCA
AGCCTGCGTGAGCACGCGCAGGAAGCCATCTTCGCCCTTCTGTACAACAT
GGACCAGACCCCGATCCAGGCTGAGATGCCGCCGGACACCACGGTGGAGA
AGACTGGTACGAAGAGCGCTTGCATCACGACAGGAGGTGAGACGGAGAAG
CTGCGGTACACCGTGGTGCTAGCTGTCCGGGGTGATGGACAGAAGGTGCG
GCCGCGCATCATCTACAAGGGGAACCCTTTTCGGACGAGCTTCGGCTACC
CGGCTGGCGGCATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCGACGGC
ACCCAGTCCGACGAGTGGGTAACCCAGGACTTCGTGCGCCGCCCAGGGTC
TACCTCCAGAGATCAGCGTTCCAGCGTTCTCGTGCTCGACGACTTCAGGT
GCCACCGGGAAGAGAGGTTCCAAAAGAAGCTAATGGACCTGGCCAAGACG
CTGGTGGTGATGCTTGGTGGAGGGCTGACCCCGGTGTGCCAGCCGCTCGA
CCGGAACATCAACAAGGAGTTCAAGCGAGGTGTTCGGGCCAGGTACACCA
GCTGGATCCGGGACAACTACGGGCGCTCGGGGCAGAAGGTGACCGCGCCG
AGCAGGGGCTGGTCGCGACGTGGGTAA
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