mRNA_P-littoralis_Contig838.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig838.7.1
Unique NamemRNA_P-littoralis_Contig838.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig838.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig838contigP-littoralis_Contig838:16447..17489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size236
Hectar predicted targeting categoryother localisation
Exons3
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791701.4151638-CDS-P-littoralis_Contig838:16446..165791680791701.4151638-CDS-P-littoralis_Contig838:16446..16579Pylaiella littoralis U1_48CDSP-littoralis_Contig838 16447..16579 +
1680791701.4338992-CDS-P-littoralis_Contig838:17128..172031680791701.4338992-CDS-P-littoralis_Contig838:17128..17203Pylaiella littoralis U1_48CDSP-littoralis_Contig838 17129..17203 +
1680791701.4443448-CDS-P-littoralis_Contig838:17462..174881680791701.4443448-CDS-P-littoralis_Contig838:17462..17488Pylaiella littoralis U1_48CDSP-littoralis_Contig838 17463..17488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig838.7.1prot_P-littoralis_Contig838.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig838 16447..17488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig838.7.1

>prot_P-littoralis_Contig838.7.1 ID=prot_P-littoralis_Contig838.7.1|Name=mRNA_P-littoralis_Contig838.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
WALLLRSRNSVTKGCLYGEDSGACPVTDRGPEEGCWLLHRDDDGDGKDVG
LPFVWIRCWVSTNALKDEAAIVKPHFLL
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mRNA from alignment at P-littoralis_Contig838:16447..17489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig838.7.1 ID=mRNA_P-littoralis_Contig838.7.1|Name=mRNA_P-littoralis_Contig838.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1043bp|location=Sequence derived from alignment at P-littoralis_Contig838:16447..17489+ (Pylaiella littoralis U1_48)
TGGGCACTGCTGCTGAGGTCGCGCAATAGTGTAACGAAAGGCTGTCTATA
CGGGGAAGATTCTGGTGCCTGCCCAGTTACAGATAGAGGTCCAGAGGAAG
GCTGCTGGCTGCTTCACCGCGATGACGATGGAGGTGTGTTGTGTTGTGGT
GTGCTGTGTTGACTGTTCGATCTTCTCTCATGTCATCTGGTACCCCTGCT
GCTTGTGTGCGTGTGCCGTGCTGTGCTCGTCACCCGGGGCAGGGCAATGA
ACTGCCTTGCTCGATTGCTGTGTAGATTGCACAGCGTCACGAAGGGTTAG
ACTAATGCGAGGATGGATTTTATTCTACATATGTGTATAGGTATCTTGTG
CAGCAGGACGTGTTTGAAAAATCTCTCCGCACCAACACATGAACATGATG
ATTCAATACAAATACTTCGAAGTATACATGAATACACCTGTTTAGTCTGT
AGCACAGCAGACAGCTGTATTCATATTGTTCACAGCAGTATACTAGTGCT
GTACCAGCACCCACATTTGTATGGCCCGTACAGCAGTACTACTCTACACA
GCAGTATACCAGTTATCTACTTAAAGTTGTCGAAAGAAACACGCACGTGC
AAATCATCGTCCTTGGTGATGTACGAGTACTCAGCCAAATTCTGAACGAG
CGTCAATCTGTATGCTGAATGAATGTTGGCAGATGGGAAGGATGTTGGTT
TGCCGTTTGTTTGGATCCGGTGCTGGGTGTCTACAAACGCGTTGAAGGAC
GAAGCAGGTGAGATGGATGGGTTCAAACCGTTATTGCCTGATGCTCCGGG
CCGGGCCGGATGGTGGGAATATCGTGCCCTATTGTCGAATTCTTGCGGCC
ATGACCGATGTTCAGGGAGTCTTTCCCTCGTCAGATATGTCGGTATTATC
GTTAGGTTGCTCAGTTGACTTACTTTATATACCTGGTGCGTGTTTTTCAG
CCGTTTATGCGGAGCACTTTTGGATCAACATTGCTGTTACTTTGTCCTCC
CCCCTGCCGCGAACAGCAATCGTGAAGCCTCATTTTCTCCTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig838:16447..17489+

>mRNA_P-littoralis_Contig838.7.1 ID=mRNA_P-littoralis_Contig838.7.1|Name=mRNA_P-littoralis_Contig838.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig838:16447..17489+ (Pylaiella littoralis U1_48)
TGGGCACTGCTGCTGAGGTCGCGCAATAGTGTAACGAAAGGCTGTCTATA
CGGGGAAGATTCTGGTGCCTGCCCAGTTACAGATAGAGGTCCAGAGGAAG
GCTGCTGGCTGCTTCACCGCGATGACGATGGAGATGGGAAGGATGTTGGT
TTGCCGTTTGTTTGGATCCGGTGCTGGGTGTCTACAAACGCGTTGAAGGA
CGAAGCAGCAATCGTGAAGCCTCATTTTCTCCTG
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