mRNA_P-littoralis_Contig830.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig830.3.1
Unique NamemRNA_P-littoralis_Contig830.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig830.3.1 vs. uniprot
Match: D7G8M0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M0_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 6.040e-64
Identity = 112/142 (78.87%), Postives = 126/142 (88.73%), Query Frame = 1 
Query:   28 QPGSPREGDGAAAEFVYKTARRVLTVLERGQYFGESGVLTYFNGGNKASAAAPPMTEQFCLVARTGVEMLVLRRKHFNIIEIPMLEVLKANYAARLHWRARRKQEAHRGRAVLRAAKRALDRAAMKAGESEGDPDFQLRQKQ 453
            +P  PREGDG AAEFVYKTARRVLTVLE G+YFGESGVLTYFNGG+K+SAAAPP+TEQFCLVART VEMLVLRR+HFNII +PMLE++KAN+AARL WRA+RKQ+AHRGRAVLRAAKRAL +AA + G  E DP FQ  QKQ
Sbjct:  107 KPDIPREGDG-AAEFVYKTARRVLTVLESGEYFGESGVLTYFNGGSKSSAAAPPVTEQFCLVARTSVEMLVLRRQHFNIIAMPMLEIIKANHAARLQWRAQRKQDAHRGRAVLRAAKRALGQAAARVG-GEEDPIFQSCQKQ 246
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BLAST of mRNA_P-littoralis_Contig830.3.1 vs. uniprot
Match: A0A835Z9P8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.130e-13
Identity = 46/122 (37.70%), Postives = 65/122 (53.28%), Query Frame = 1 
Query:   64 AEFVYKTARRVLTVLERGQYFGESGVLTYFNGGN-------------------KASAAAPPMTEQFCLVARTGVEMLVLRRKHFNIIEIPMLEVLKANYAARLHWRARRKQEAHRGRAVLRA 372
            A    +  RRVL +LE G++ GESG+L   + G                           P+TE F +VART V+ LVLR +H+ II+   LE++++ +A R  WR  RK+EAHR R V+RA
Sbjct: 1090 AMHAVRGRRRVLAILEAGEHLGESGLLQAASVGGWGXXXXXXXXXXXXXXXXXXXXGKREPITESFSVVARTTVQALVLRARHYAIIDANTLELVRSAHAVRALWRRARKKEAHRARGVVRA 1211
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig830.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8M0_ECTSI6.040e-6478.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z9P8_9STRA2.130e-1337.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig830contigP-littoralis_Contig830:17096..18845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size455
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-00_010990.1
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791694.6318343-CDS-P-littoralis_Contig830:17097..171421680791694.6318343-CDS-P-littoralis_Contig830:17097..17142Pylaiella littoralis U1_48CDSP-littoralis_Contig830 17098..17142 -
1680791694.6435108-CDS-P-littoralis_Contig830:17505..176371680791694.6435108-CDS-P-littoralis_Contig830:17505..17637Pylaiella littoralis U1_48CDSP-littoralis_Contig830 17506..17637 -
1680791694.6539357-CDS-P-littoralis_Contig830:17851..180461680791694.6539357-CDS-P-littoralis_Contig830:17851..18046Pylaiella littoralis U1_48CDSP-littoralis_Contig830 17852..18046 -
1680791694.6699011-CDS-P-littoralis_Contig830:18764..188451680791694.6699011-CDS-P-littoralis_Contig830:18764..18845Pylaiella littoralis U1_48CDSP-littoralis_Contig830 18765..18845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig830.3.1prot_P-littoralis_Contig830.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig830 17098..18845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig830.3.1

>prot_P-littoralis_Contig830.3.1 ID=prot_P-littoralis_Contig830.3.1|Name=mRNA_P-littoralis_Contig830.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=151bp
GVVGGKATAQPGSPREGDGAAAEFVYKTARRVLTVLERGQYFGESGVLTY
FNGGNKASAAAPPMTEQFCLVARTGVEMLVLRRKHFNIIEIPMLEVLKAN
YAARLHWRARRKQEAHRGRAVLRAAKRALDRAAMKAGESEGDPDFQLRQK
Q
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mRNA from alignment at P-littoralis_Contig830:17096..18845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig830.3.1 ID=mRNA_P-littoralis_Contig830.3.1|Name=mRNA_P-littoralis_Contig830.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1750bp|location=Sequence derived from alignment at P-littoralis_Contig830:17096..18845- (Pylaiella littoralis U1_48)
GGGGTGGTAGGAGGGAAGGCGACAGCACAGCCGGGCAGTCCGCGTGAAGG
AGATGGAGCGGCGGCAGAGTTCGTCTACAAGGTTTGCCTCAGGCGTCAAC
ATAGGGGACGGCCGGGTCAGGGAGTGATTGCAAGCTACGCTGCTGTACAA
TGCCGCGTGTCTCCGACGGCAACGGACATTGCAAGCGACAAAGAGGGTAG
CAAAGCAAGGGACGCCTAGATTTTTCGTGTTGTGTCCTAGATCAAGTGGA
TTGTTGATTCCTGTTAGACCGGGGTTCGGATTGTCAGCCTCCCAGCCAAC
ACAAAATAGATTTTCCAAAAACAATCTCAACCTAATCTTAAGGGCGTCGA
GCAAGTAGAAATAACAACTATATAGGAATTTCCCTACATTTAGTCTTGCT
GGGTATTGTTGTTCAATTGACAGCCACGTCGATACCTCTCTTCGTAAAGA
CTTGTGCACCTGCCTTTTTTTTTATCTCCTCCAGAAGTAGGGTTGACAAA
TGTGGGAAGCCACGTGTCATTTGATTTTGAGAGGGCAGTTGCACGTGATG
ATACCACGGGTTAGCATTTAGTACGACTTGAGCTTTTTCTGGGCAAAATT
TTATTCGAGAGTGCCTGTGGAGGTGGCTAAATGGGTGAAACGGAGTATGC
CTTGCCGTGCTCTTGTAGGATAATCACGGTGGGACGCTGTTGTCCTCCTA
TCAATACGCCCATCCAGTGTGCGCCGCTCCTCACCCACCGACCCGCCCCC
TTTTGGTCTTGCATCCTGTCAACCTCATGGCCACTGCGCACGCCCAAAGA
CGGCTAGGAGAGTGCTGACCGTGCTGGAGCGCGGGCAGTACTTTGGGGAA
TCTGGCGTTCTGACTTACTTCAACGGCGGCAACAAGGCCTCGGCGGCCGC
TCCCCCGATGACCGAGCAGTTCTGTCTCGTGGCGCGCACCGGCGTGGAGA
TGCTGGTGCTTCGCCGAAAGCACTTCAACATCATCGAGATACCGGTTCGA
AATCCGTACGAAACATGCGAAAATCAGCACTATTATCTCTGCTTGATTCT
CCCAGATCGCACATGATGCCAATCCGAACACTAAGGCTACCTCTCCTTCA
GCTCAGTATTGAATCTCCCCAACCCACGCAAATATCGAAAGCCTGAAGAA
TGTCGGACTACCTTATGTCGCCGCTTTCGCTTTACTTTGACATGCCTATG
CGGCGCAGATGCTTGAGGTCCTCAAGGCGAACTACGCGGCCCGCCTTCAC
TGGAGGGCCCGGCGCAAACAGGAGGCGCACCGGGGACGGGCGGTTTTGAG
AGCGGCCAAGAGGGCGCTGGATCGTGCTGCTATGAAGGCGGTGAGGGAGG
GCACTTCCTAGTAAATCCTGATTGGATGTCTTTGAGTTCACGAAAATAGT
GCCGGAAACGTCAAGCAGAGAGCTTCGTTTGCCAAGTCAGCATCGAGGGC
TGTAGTCACGCCGGCGATAATTGTGCACTTTGACTGTAGTGTTAGAGTAG
GGAAGGATCCGCGTGCCAGAAATCACCGCACCCAGCAAAGCATGTTGCGC
CCGTACTCGTGGCTCTGCTTTTCATGGTGCAGCAGCAGGCGTTTTCGAAA
TCCGAATTTTGGGGAGGTGTTTTACCCTCCTTTGTGAGCCACCGCCGCCC
TTCACCTTCTGCTACATCTGCTCCCATTGCACCTGGTCTGTAATAAACAA
AAGGGGGAAAGCGAAGGAGACCCCGACTTTCAGCTCCGTCAAAAGCAACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig830:17096..18845-

>mRNA_P-littoralis_Contig830.3.1 ID=mRNA_P-littoralis_Contig830.3.1|Name=mRNA_P-littoralis_Contig830.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig830:17096..18845- (Pylaiella littoralis U1_48)
GGGGTGGTAGGAGGGAAGGCGACAGCACAGCCGGGCAGTCCGCGTGAAGG
AGATGGAGCGGCGGCAGAGTTCGTCTACAAGACGGCTAGGAGAGTGCTGA
CCGTGCTGGAGCGCGGGCAGTACTTTGGGGAATCTGGCGTTCTGACTTAC
TTCAACGGCGGCAACAAGGCCTCGGCGGCCGCTCCCCCGATGACCGAGCA
GTTCTGTCTCGTGGCGCGCACCGGCGTGGAGATGCTGGTGCTTCGCCGAA
AGCACTTCAACATCATCGAGATACCGATGCTTGAGGTCCTCAAGGCGAAC
TACGCGGCCCGCCTTCACTGGAGGGCCCGGCGCAAACAGGAGGCGCACCG
GGGACGGGCGGTTTTGAGAGCGGCCAAGAGGGCGCTGGATCGTGCTGCTA
TGAAGGCGGGGGAAAGCGAAGGAGACCCCGACTTTCAGCTCCGTCAAAAG
CAA
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