mRNA_P-littoralis_Contig83.97.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig83.97.3
Unique NamemRNA_P-littoralis_Contig83.97.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig83.97.3 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 2.480e-122
Identity = 187/335 (55.82%), Postives = 222/335 (66.27%), Query Frame = 1
Query:   25 TLPAITKDATCEDWVAWIPPRSDPAVLMQVVSEAYIDIERNFIRLMERNSALTRHNLFLMCMDDESARFFESSMNIRCIPVSALKLPSHSAIWKLRIKVVSCLVEVGRVDVIMSDADALWLGDPIRELYGSFKAPXXXXXXXXXXXXRGGIHDSDVVASRGSYPKQLGDEWGSTICMGFILLRGGNVAAMKEFLDTMESFVLTTEDDQISINQAVHDLGIVWDKDSDMRYENSTDLGTGTVISLPADAE--------------------GR-------PFSVTLLPHSKYTRRCGTTPISTET-VVAHCFDPRKRADVKTNWIQEENLWFVHENP 945
            TLPAITKDATC DW AWIPPRS PAV+MQVVSE YIDIERNFIRLMERNS  TR N++LMCMDD S  FF++ M IRC+P+SAL LP+H  IW+LR++VVSCL+E+G VDVIMSDADALWL DP ++L+                  RG     D+VASRGS+P     EWGST+CMGFIL R  NVA MK FLD M   V+  +DDQIS+N+A   LGIVWDK+SDMRYE ST  G G +  L                         GR       PF VTLLPHS YTR CG   +S +T VVAHC+ P+K A VKT+W+++ NLW V ++P
Sbjct:   26 TLPAITKDATCVDWAAWIPPRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFS-----------------RGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 343          
BLAST of mRNA_P-littoralis_Contig83.97.3 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 8.810e-115
Identity = 176/309 (56.96%), Postives = 216/309 (69.90%), Query Frame = 1
Query:    4 HLSSLGPTLPAITKDATCEDWVAWIPPRSDPAVLMQVVSEAYIDIERNFIRLMERNSALTRHNLFLMCMDDESARFFESSMNIRCIPVSALKLPSHSAIWKLRIKVVSCLVEVGRVDVIMSDADALWLGDPIRELYGSFKAPXXXXXXXXXXXXRGGIHDSDVVASRGSYPKQLGDEWGSTICMGFILLRGGNVAAMKEFLDTMESFVLTTEDDQISINQAVHDLGIVWDKDSDMRYENSTDLGTGTVISLPADAEGRPFSVTLLPHSKYTRRCGTTPISTETVVAHCFDPRKRADVKTNWIQEENLWF 930
            H  ++   LPAIT  ATC DW+ WIPPRSDPA++MQVVS  Y+++ERNFIRLME NSALTR +L+LMCMD+ S  FFESSMNIRCIP++A   PSH+ IW LR +VVSCLVE G+ DVIMSDADALWL DP ++    F  P               + DS VVASRG +PK LG EWG+T+CMGF+L R      + EFL+ M++ V   +DDQIS+N A  +LGIVWD++SDMRY  S   G GT+ +L  D   +PFSVTLLPH+ YTR C  TPIS +TVVAHC+ P K AD KT W+ +  LWF
Sbjct:   27 HGPAVSRRLPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQ-DVIMSDADALWLDDPFKD----FNLPR--------------VIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTL-VDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAP-KTADSKTGWMVQSKLWF 314          
BLAST of mRNA_P-littoralis_Contig83.97.3 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 6.580e-93
Identity = 162/359 (45.13%), Postives = 198/359 (55.15%), Query Frame = 1
Query:  112 VVSEAYIDIERNFIRLMERNSALTRHNLFLMCMDDESARFFESSMNIRCIPVSALKLPSHSAIWKLRIKVVSCLVEVGRVDVIMSDADALWLGDPIRELYGSFKAPXXXXXXXXXXXXRGGIHDSDVVASRGSYPKQLGDEWGSTICMGFILLRGGNVAAMKEFLDTMESFVLTTEDDQ-----------------------------------------------------ISINQAVHDLGIVWDKDSDMRYENSTDLGTGTVISLPADAE--------------------GR-------PFSVTLLPHSKYTRRCGTTPISTET-VVAHCFDPRKRADVKTNWIQEENLWFVHENP 945
            VVSE YIDIERNFIRLMERNS  TR N++LMCMD  S  FF++ M IRC+P+SAL LP+H  IW+LR+KVVSCL+EVG VDVIMSDADALWL DP ++L+                  RGG    D++ASRGS+P +   EWGST+CMGFI+ R  NVA MK FLD M   V+  +DDQ                                                     IS+N+A   LGIVWDK+SDMRYE ST  G G +  L +                       GR       PF V LLPHS YTRRCG   +S +T VVAHC+ P+K A VKT+W+++ NLW V ++P
Sbjct:    5 VVSEGYIDIERNFIRLMERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPMSALDLPTHQDIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFS-----------------RGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQMLCECATGVENDFCGFPASSRPRSNPTLTESAFCVAAPSPNASLILSIVSVEKISVNRAAKQLGIVWDKNSDMRYEESTGYGRGVIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVILLPHSAYTRRCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 346          
BLAST of mRNA_P-littoralis_Contig83.97.3 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 2.400e-77
Identity = 134/307 (43.65%), Postives = 185/307 (60.26%), Query Frame = 1
Query:   25 TLPAITKDATCEDWVAWIPPRSDPAVLMQVVSEAYIDIERNFIRLMERNSALTRHNLFLMCMDDESARFFESSMNIRCIPVSALKLP-SHSAIWKLRIKVVSCLVEVGRVDVIMSDADALWLGDPIRELYGSFKAPXXXXXXXXXXXXRGGIHDSDVVASRGSYPKQLGDEWGSTICMGFILLRGGNVAAMKEFLDTMESFVLTTEDDQISINQAVHDLGIVWDKDSDMRYENSTDLGTGTVISLPADAEGRPFSVTLLPHSKYTRRCGTTPISTETVVAHCFDPRKRADVKTNWIQEENLWFVHEN 942
            TLP ITKD++C D +AW+PPRS PAV+ QVVSE Y  +E NFI  ME +S  +R NL+L+C+D+ES   F+  + IRC+    L  P S   +W LR++   CL+  G+ DV+MSDADA+WL DP  +                         DS+VVASR   P  L  +WG+T+CMGF   R G  +AM+ F+  +   V    DDQ ++N+A+  LG+VWD  SDM + NST  GTG + ++ A+  G P  VTLLPH+KYTR C  TPIS +T+VAHC    K   + T W++E +LW + ++
Sbjct:   60 TLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEANFISNMELHSTFSRENLYLVCLDEESVAIFDG-LGIRCVRYGCLGCPMSRLDVWVLRVEATLCLLNAGQ-DVLMSDADAIWLRDPTNDFASDLNM------------------DSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGG-SAMQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPTSDMDFTNSTRPGTGVIENITAN--GDPLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMAT-WMKEAHLWNLPDD 342          
BLAST of mRNA_P-littoralis_Contig83.97.3 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 2.360e-75
Identity = 135/307 (43.97%), Postives = 185/307 (60.26%), Query Frame = 1
Query:   25 TLPAITKDATCEDWVAWIPPRSDPAVLMQVVSEAYIDIERNFIRLMERNSALTRHNLFLMCMDDESARFFESSMNIRCIPVSALKLP-SHSAIWKLRIKVVSCLVEVGRVDVIMSDADALWLGDPIRELYGSFKAPXXXXXXXXXXXXRGGIHDSDVVASRGSYPKQLGDEWGSTICMGFILLRGGNVAAMKEFLDTMESFVLTTEDDQISINQAVHDLGIVWDKDSDMRYENSTDLGTGTVISLPADAEGRPFSVTLLPHSKYTRRCGTTPISTETVVAHCFDPRKRADVKTNWIQEENLWFVHEN 942
            TLP ITKD++C D +AW+PPRS PAV+ QVVSE Y  +E NFI  ME +S  +R NL+L+C+D+ES   F+  + IRC+    L  P S   IW LRI V  CL+  G+ DV+MSDADA+WL DP  +L                        DS+VVASR   P  L  +WG+TICMGF   R G  +AM+ F+  +E       +DQI++N+A++ L +VWD  SDM + ++T  GTG + ++  D  G    VTLLPH+KYTR C  TPIS +T+VAHC    K   + T W++E +LW + ++
Sbjct:  135 TLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESVAIFDG-LGIRCVRYGCLGCPVSRGDIWVLRIDVTICLLNAGQ-DVLMSDADAIWLRDPTDDLASD------------------AFLDSNVVASRAVMPFPLYHKWGATICMGFAFFRAGG-SAMQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPMSDMNFTDNTRPGTGVIENITVD--GGSLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMAT-WMKEAHLWNLPDD 417          
BLAST of mRNA_P-littoralis_Contig83.97.3 vs. uniprot
Match: D8LSV3_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 1.340e-72
Identity = 130/307 (42.35%), Postives = 189/307 (61.56%), Query Frame = 1
Query:   25 TLPAITKDATCEDWVAWIPPRSDPAVLMQVVSEAYIDIERNFIRLMERNSALTRHNLFLMCMDDESARFFESSMNIRCIPVSALKLP-SHSAIWKLRIKVVSCLVEVGRVDVIMSDADALWLGDPIRELYGSFKAPXXXXXXXXXXXXRGGIHDSDVVASRGSYPKQLGDEWGSTICMGFILLRGGNVAAMKEFLDTMESFVLTTEDDQISINQAVHDLGIVWDKDSDMRYENSTDLGTGTVISLPADAEGRPFSVTLLPHSKYTRRCGTTPISTETVVAHCFDPRKRADVKTNWIQEENLWFVHEN 942
            TL AI++ A+C D VAW+PP+  PAV+ QVVS+AY+ +++NFI  ME +S  +R N++L+C+D+ES   F  ++ IRC+    +  P S   +W LRI+V  CL++ G +DV+MSDADA+WL DP+ +                         DS +VASRG+ P  L   WG+TICMGF+L R G+  A+ +F++ +  F    E+DQ ++N A+  L +VWD  SDM + +ST  G G V S+ +   G   +V+LLPH+KYTR C  TPIS ETVVAHC    K   + T W++E +LW V ++
Sbjct:  118 TLLAISRHASCADIVAWLPPQLQPAVVFQVVSKAYVSVQKNFISNMELHSTFSRENMYLICLDEESVESF-GALGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAG-IDVLMSDADAVWLHDPMDDFDSD------------------DYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGS-NAIYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPTSDMSFSDSTRSGVGVVNSIYS---GESLTVSLLPHNKYTRSCRRTPISVETVVAHCISTDKGEGMAT-WMKEAHLWNVPDD 399          
BLAST of mRNA_P-littoralis_Contig83.97.3 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 7.540e-54
Identity = 117/307 (38.11%), Postives = 151/307 (49.19%), Query Frame = 1
Query:   28 LPAITKDATCEDWVAWIPPRSDPAVLMQVVSEAYIDIERNFIRLMERNSALTRHNLFLMCMDDESARFFESSMNIRCIPVSALKLPSHSAIWKLRIKVVSCLVEVGRVDVIMSDADALWLGDPIRELYGSFKAPXXXXXXXXXXXXRGGIHDSDVVASRGSYPKQLGDEWGSTICMGFILLRG-GNVAAMKEFLDTMESFVLTTEDDQISINQAVHDLGIVWDK-DSDMRYENSTDLGTGTVISLPADAEGRPFSVTLLPHSKYTRRCGTTPISTETVVAHCFDPRKRADVKTNWIQEENLWFVHEN 942
            LPAI+ +A C DW AW+PP S P V+MQV                                                                          E G  DV+MSDADALWL DP+++    F  P              G+  S +VASRGS+P ++G  WG+TICMGFIL R   +  AM+EF+  M + VL  +DDQI++N A  DLGIVW++ DSDMRY  ST  G G + SL +D + +PF+VTLLPHS YTR C +TP+S  TVVAHC    K    K +W+   +LW V E+
Sbjct:   36 LPAISPEAVCADWAAWVPPMSGPTVVMQV--------------------------------------------------------------------------EAGH-DVMMSDADALWLADPMKD----FSLP--------------GVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSL-SDDDNQPFTVTLLPHSAYTRICASTPVSNTTVVAHCISS-KTPQSKADWMHRMDLWAVDED 247          
BLAST of mRNA_P-littoralis_Contig83.97.3 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 7.240e-45
Identity = 83/167 (49.70%), Postives = 109/167 (65.27%), Query Frame = 1
Query:  160 MERNSALTRHNLFLMCMDDESARFFESSMNIRCIPVSALKLPSHSAIWKLRIKVVSCLVEVGRVDVIMSDADALWLGDPIRELYGSFKAPXXXXXXXXXXXXRGGIHDSDVVASRGSYPKQLGDEWGSTICMGFILLRG-GNVAAMKEFLDTMESFVLTTEDDQISI 657
            ME  ++ TR++L+LMC+DD+S  FFES M I CIP+S L + SH  IW LR++VVSCL E G  DVIMSDADALWL DP+++    F  P              G+ DS +VASRG  PK++G  WG+T+CMGFIL R   N  AM +F+  M + V  +EDDQI++
Sbjct:    1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLSGLNISSHEQIWVLRVRVVSCLAEAGH-DVIMSDADALWLADPMKD----FSLP--------------GVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148          
BLAST of mRNA_P-littoralis_Contig83.97.3 vs. uniprot
Match: A0A8J6CCA2_DIALT (Nucleotid_trans domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCA2_DIALT)

HSP 1 Score: 108 bits (269), Expect = 1.900e-23
Identity = 90/310 (29.03%), Postives = 142/310 (45.81%), Query Frame = 1
Query:   28 LPAITKD--ATCEDWVAWIPPRSDPAVLMQVVSEAYIDIERNFIRLMERNSALTRHNLFLMCMDDESARFFESSMNIRCIPVSALKLPSHSA-IWKLRIKVVSCLVEVGRVDVIMSDADALWLGDPIRELYGSFKAPXXXXXXXXXXXXRGGIHDSDVVASRGSYPKQLGDEWGSTICMGFILLRGGNV---AAMKEFLDTMESFVLTTEDDQISINQAVHDLGIVWDKDSDMRYENSTDLGTGTVISLPADAEGRPFSVTLLPHSKYTRRCGTTPISTETVVAHCFDPRKRADVKTNWIQEENLWFVHE 939
            LP   KD  A     V  +P    P V+M V++ AY  +  NFIR    +  L      ++C D  +A    + +  RC     +K    +A ++  RI  V+ LV +GR DV+++D DA+WLGDP+ ++  +                      + ++ SRG  P     +WG+++CMGFI  RG +    AAM    + M        +DQ   N  +    +VWD+   +R+ +S D   GT+    A+A      V +LPH  Y R C      +  ++AHC    KRA +K   +  +NLW++ E
Sbjct:   25 LPVALKDTGAPVASLVPPVPGVPRPVVVM-VLNSAYTRVFENFIRAPGAHH-LAAWETHIICTDRATAVSL-AKLGWRC--QDTVKTGRSAAQVYTRRIPYVAHLVHLGR-DVLITDVDAIWLGDPLPDIMAT---------------------QAGIIGSRGRSPHL---DWGASLCMGFIFFRGSDPLVRAAMPVLTEPMR-------EDQTDFNHNMQRERLVWDEGR-VRFVDSIDTSFGTLRPKNANAGHAGLRVAMLPHKSYVRICEDKVDYSTVIIAHCHSRGKRAHLKVQSLGAKNLWYIPE 296          
BLAST of mRNA_P-littoralis_Contig83.97.3 vs. uniprot
Match: K0TFP2_THAOC (Nucleotid_trans domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TFP2_THAOC)

HSP 1 Score: 70.1 bits (170), Expect = 1.340e-9
Identity = 73/240 (30.42%), Postives = 111/240 (46.25%), Query Frame = 1
Query:  298 IWKLRIKVVSCLVE-VGRVDVIMSDADALWLGDPIRELYGSFKAPXXXXXXXXXXXXRGGIHDSDVVASRGSYPKQL--------GDEWGSTICMGFILLRGGNVAAMKEFLDTMESFVLTTE-DDQISINQAVH----DLGIVWDKDSDMRYENSTDLGTGTVISLPADAEGRPFSVTLLPHSKYTRRCGTTPISTETV-VAHCFDPR-----------KRADVKTNWIQEENLWFVHE 939
            +W LRI+++  ++    ++++I+SDADA+WL DP  EL+ S                      SD++ASRG+YP +          +    ++C+G+   R  N  A++  L  +E  + T   DDQ+SIN  +H     LG  W  DSD         G+ T +      + +   VT+LP+SK  R C    +ST TV VAHC   R           K AD K + ++E  L F  E
Sbjct:  400 LWPLRIEIMRRVLSGFPQLNIILSDADAIWLQDP-SELWSS--------------------SGSDLIASRGTYPGRSRCAFAYEEDETTPLSVCLGWSYFR--NTEAVRLLLIDLELLLPTLHNDDQLSINCLLHRQYQKLG--WFLDSD---------GSNTQVYRRLGVDFKSIQVTVLPYSKIIRNCEEGFLSTTTVTVAHCHFRRRGIEKRMRISNKNADSKIHTLKE--LGFAKE 603          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig83.97.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LK17_ECTSI2.480e-12255.82Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A6H5LI82_9PHAE8.810e-11556.96Nucleotid_trans domain-containing protein n=2 Tax=... [more]
A0A6H5JTX9_9PHAE6.580e-9345.13Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A6H5KMQ8_9PHAE2.400e-7743.65Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D7FGV6_ECTSI2.360e-7543.97Acetyltransferase (Isoleucine patch superfamily pr... [more]
D8LSV3_ECTSI1.340e-7242.35Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D7G4E2_ECTSI7.540e-5438.11Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D7FQM0_ECTSI7.240e-4549.70Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A8J6CCA2_DIALT1.900e-2329.03Nucleotid_trans domain-containing protein n=1 Tax=... [more]
K0TFP2_THAOC1.340e-930.42Nucleotid_trans domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig83contigP-littoralis_Contig83:358758..361654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LK17
PFAMsNucleotid_trans
Model size948
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue4.06e-123
EggNOG OGs2C6NG@1|root,2SGR5@2759|Eukaryota
DescriptionNucleotide-diphospho-sugar transferase
Cds size948
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791691.1160066-CDS-P-littoralis_Contig83:358757..3588681680791691.1160066-CDS-P-littoralis_Contig83:358757..358868Pylaiella littoralis U1_48CDSP-littoralis_Contig83 358758..358868 +
1680791691.1293263-CDS-P-littoralis_Contig83:359601..3598011680791691.1293263-CDS-P-littoralis_Contig83:359601..359801Pylaiella littoralis U1_48CDSP-littoralis_Contig83 359602..359801 +
1680791691.1398995-CDS-P-littoralis_Contig83:360479..3608161680791691.1398995-CDS-P-littoralis_Contig83:360479..360816Pylaiella littoralis U1_48CDSP-littoralis_Contig83 360480..360816 +
1680791691.1503506-CDS-P-littoralis_Contig83:361061..3612191680791691.1503506-CDS-P-littoralis_Contig83:361061..361219Pylaiella littoralis U1_48CDSP-littoralis_Contig83 361062..361219 +
1680791691.1599884-CDS-P-littoralis_Contig83:361512..3616541680791691.1599884-CDS-P-littoralis_Contig83:361512..361654Pylaiella littoralis U1_48CDSP-littoralis_Contig83 361513..361654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig83.97.3prot_P-littoralis_Contig83.97.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig83 358758..361654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig83.97.3

>prot_P-littoralis_Contig83.97.3 ID=prot_P-littoralis_Contig83.97.3|Name=mRNA_P-littoralis_Contig83.97.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=316bp
MHLSSLGPTLPAITKDATCEDWVAWIPPRSDPAVLMQVVSEAYIDIERNF
IRLMERNSALTRHNLFLMCMDDESARFFESSMNIRCIPVSALKLPSHSAI
WKLRIKVVSCLVEVGRVDVIMSDADALWLGDPIRELYGSFKAPPPLLSDG
GGGGGRGGIHDSDVVASRGSYPKQLGDEWGSTICMGFILLRGGNVAAMKE
FLDTMESFVLTTEDDQISINQAVHDLGIVWDKDSDMRYENSTDLGTGTVI
SLPADAEGRPFSVTLLPHSKYTRRCGTTPISTETVVAHCFDPRKRADVKT
NWIQEENLWFVHENP*
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mRNA from alignment at P-littoralis_Contig83:358758..361654+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig83.97.3 ID=mRNA_P-littoralis_Contig83.97.3|Name=mRNA_P-littoralis_Contig83.97.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=2897bp|location=Sequence derived from alignment at P-littoralis_Contig83:358758..361654+ (Pylaiella littoralis U1_48)
ATGCATCTTTCCTCCCTGGGACCCACCCTACCAGCGATTACGAAGGATGC CACGTGCGAAGACTGGGTGGCGTGGATACCTCCGAGGTCTGATCCGGCAG TTTTGATGCAGGTGGGTGCGGTGCCTAGATTATTGATGATAGTAACAAAT TCCGGGAGATTGGAAACATACCCTCTAGGCGCGGTGGGTTTTTTCCATAG TCGATACACGTATGGTGATCTATCTCTCCACGCAGCAAAGCAAGCTTCGT CTGTCTAAGTATTTCTATGGGTGGCGGTGGTAGAAAGGTCTTGTAAAGTC GAGGGCTTTTCTAAAGCGTGTGCGATATTTGTTTGGTAAAGTACCGACAG TATTTGGTAACCTCTTCATTGCGGAATATCGTATCGTAGAGCTCTTCGGG TACCGGATCATTCTGGGGGTCCCGTGTTTCGTCTTCCGTCGGGTATATAC GGTAGAGCAATGCAACGTTTGGAACGAGTAGCAGTAGTGGCATAGTGGTG GCATGCGCAAAAGCACACTCCAGCACCACCCCCATGTTTTCCGAATTGAG GTCACTTGGATTATCAGTCGGTTCACCGTCAGGTTGATACGATATACCTT GTAGACACTGTTTTATTTGCCTCTGAAGTACTCGATCGGTGTGGTCAAGA CGGGTTCAGAGGTGAACATTTGCTCAATACTATTGGGATTATCCATCAAC AATGACTTTTATTTTAGCCTGTTGAGTCTACTCTGTTTCGACCGAGGCGG CCATGGGGGGTGTGCAGAGGATAATGTCTACCAGTATTGATTATTCGGGG CCCCCAAACAATGGTGCTGTGATGCATCGTATCGCATGCTGCAGGTGGTG AGCGAAGCCTACATCGACATCGAGCGAAATTTCATCCGGCTCATGGAGCG AAACTCGGCGTTGACCCGGCATAACCTGTTTCTGATGTGCATGGACGACG AGTCCGCTCGATTTTTCGAAAGTTCCATGAATATTCGGTGCATCCCCGTG AGCGCCCTGAAGCTGCCGTCCCATTCAGCCATCTGGAAGCTCAGGTGATG TTACTCTTCATGCAAACTCGTAGGTCATACGAACAAAACCAATCAAGTTT ATAGTGAGTTATGTTCTGGCCCATGTTGCCTCTATCCACTGTACCTCTCT TCTTCTCCCCCTCTCCCCTCCCCTCCCCCCCCGCCGTTTTCTCTCTCCCA TGGCTTCTTGGTATCCCCATTCCTCCCTTTTGTTTTTTTGCTGGATTTTG TACAAGTTTCCCGAAAGATAGCCAGTCCGGCCTACCACGCCCCGGCCACT CCATCAAAATGATCACTTCGTCACAAAAATACTACTTCGAAGTACTTTAG TTCGTTGCTGCGAAGAGAATAGAAGCAGCGGAGTCAGTCGAGTCAGTCGT TCATTTAGGGTTTCCCCCGCGGGGAGCAACTTCGTCTCGTCATGCATGCG TCCAACAACACGGACGTGTGTAGAGATCACGTTCTGCTGTGATGGAGGCG GTGACGCATCGCATCGCGTGTCGCATCGACTCGCACCGACTCTACCGCAC ACCACTCCGCAACAATCTAGTATCCCTTTTGTCGTGGTCTATCTTGCCGT GTGCGTGTTGATCTTCGTCGCTCAGAACAGAACCTCGTATCCAACACCAC GAAAGAAATGTGAAAACCTTTTCGTTTGATCGAATTCACTCCCACTCCCC CCCTCTCTACCCCCTCTTTAAGGATAAAGGTGGTCTCTTGCCTGGTGGAG GTAGGCCGTGTGGACGTCATCATGAGTGACGCGGACGCGTTGTGGCTCGG TGATCCAATACGAGAGCTGTACGGCAGCTTCAAGGCCCCGCCGCCGCTGT TGTCTGATGGTGGCGGTGGCGGGGGAAGAGGAGGCATCCACGACAGCGAC GTGGTGGCCTCGCGGGGTAGTTATCCGAAACAACTCGGGGACGAGTGGGG CTCGACGATCTGCATGGGGTTCATTCTACTCCGAGGAGGCAATGTCGCGG CTATGAAGGAGTTCCTCGATACTATGGAGAGCTTCGTCTTGACGACCGAG GATGACCAGGTATGTACTTCCAAGTGTGATTTGTGCAAAAACACACTCAC TCATATTTGGAGGTATAATAATACGTTTCCATATTATCTTTGAGTCAACC TTTTGCGTGAAAGTGTGTGTGTTGTCTCCCATCTGTTGTTCTGGAAGTCT GTGGTTGACTTCCGAAACACATGTACTTCGAAGTGTTACCTTACGCCGCC ATTCGTTTGGGTGACTTGTTTTCCGTTGTCTTTGTTGCTGTGGGTGGGGG ACAGATATCGATCAACCAAGCGGTGCATGACCTCGGGATAGTGTGGGACA AGGACAGCGATATGCGTTACGAGAACAGCACCGACCTTGGAACAGGAACG GTCATCTCTCTCCCTGCCGATGCGGAGGGGCGACCCTTCAGCGTGACTCT TCTCCCTCACAGGTACAATACCACCGAGGTACTGCTGCTGTGCACAACGA AATCGATACCTATACAATACCTTTCGCTGTCCTTCCTTTATACGATATGT CGTCGGCTCCTGCCTGAGCTCGCTAGCTGCCCAACCTTTTTCCGACCTCG TACATAACCTCTTCCCTCCTCCTCTAGCCAGCCTGTCTACTGTAGTTCTT CAAGTAGCCTGACACTGCTGCCGTGTTCTTTATACTTGTACGATACCTAC GATGATCTCCTTCACACCATACAATTACGATATGAATGACCCGTCGCGCG CGCAGCAAGTACACGAGGAGATGCGGTACAACGCCGATCTCGACGGAGAC GGTCGTGGCACACTGTTTCGACCCCAGGAAGAGGGCAGATGTCAAGACCA ATTGGATTCAGGAAGAGAACCTCTGGTTTGTTCATGAGAATCCCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig83:358758..361654+

>mRNA_P-littoralis_Contig83.97.3 ID=mRNA_P-littoralis_Contig83.97.3|Name=mRNA_P-littoralis_Contig83.97.3|organism=Pylaiella littoralis U1_48|type=CDS|length=948bp|location=Sequence derived from alignment at P-littoralis_Contig83:358758..361654+ (Pylaiella littoralis U1_48)
ATGCATCTTTCCTCCCTGGGACCCACCCTACCAGCGATTACGAAGGATGC
CACGTGCGAAGACTGGGTGGCGTGGATACCTCCGAGGTCTGATCCGGCAG
TTTTGATGCAGGTGGTGAGCGAAGCCTACATCGACATCGAGCGAAATTTC
ATCCGGCTCATGGAGCGAAACTCGGCGTTGACCCGGCATAACCTGTTTCT
GATGTGCATGGACGACGAGTCCGCTCGATTTTTCGAAAGTTCCATGAATA
TTCGGTGCATCCCCGTGAGCGCCCTGAAGCTGCCGTCCCATTCAGCCATC
TGGAAGCTCAGGATAAAGGTGGTCTCTTGCCTGGTGGAGGTAGGCCGTGT
GGACGTCATCATGAGTGACGCGGACGCGTTGTGGCTCGGTGATCCAATAC
GAGAGCTGTACGGCAGCTTCAAGGCCCCGCCGCCGCTGTTGTCTGATGGT
GGCGGTGGCGGGGGAAGAGGAGGCATCCACGACAGCGACGTGGTGGCCTC
GCGGGGTAGTTATCCGAAACAACTCGGGGACGAGTGGGGCTCGACGATCT
GCATGGGGTTCATTCTACTCCGAGGAGGCAATGTCGCGGCTATGAAGGAG
TTCCTCGATACTATGGAGAGCTTCGTCTTGACGACCGAGGATGACCAGAT
ATCGATCAACCAAGCGGTGCATGACCTCGGGATAGTGTGGGACAAGGACA
GCGATATGCGTTACGAGAACAGCACCGACCTTGGAACAGGAACGGTCATC
TCTCTCCCTGCCGATGCGGAGGGGCGACCCTTCAGCGTGACTCTTCTCCC
TCACAGCAAGTACACGAGGAGATGCGGTACAACGCCGATCTCGACGGAGA
CGGTCGTGGCACACTGTTTCGACCCCAGGAAGAGGGCAGATGTCAAGACC
AATTGGATTCAGGAAGAGAACCTCTGGTTTGTTCATGAGAATCCCTGA
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