mRNA_P-littoralis_Contig83.61.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig83.61.1
Unique NamemRNA_P-littoralis_Contig83.61.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig83.61.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.600e-18
Identity = 49/109 (44.95%), Postives = 65/109 (59.63%), Query Frame = 2 
Query:    2 MGVEEEQQESRGVCVGVQTADGQVVANGEVTADNSVAVGEEKELVANPSNWVGGRAFAQRLRA-SRKYQLRIRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGK 325
            MG E +++ES GV V VQ   G               VG E E+V NP  W    +    + A +++Y+LR+RQ SCYCSKC VGAY++C+PAKKY+ +VG VK  SGK
Sbjct:  797 MGAEVQEEESSGVSVEVQKESGV-----------PPLVGGENEVVVNPLRWQADESIVLTVPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPAKKYEGMVGMVKDVSGK 894
[Close]
BLAST of mRNA_P-littoralis_Contig83.61.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.820e-18
Identity = 49/109 (44.95%), Postives = 65/109 (59.63%), Query Frame = 2 
Query:    2 MGVEEEQQESRGVCVGVQTADGQVVANGEVTADNSVAVGEEKELVANPSNWVGGRAFAQRLRA-SRKYQLRIRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGK 325
            MG E +++ES GV V VQ   G               VG E E+V NP  W    +    + A +++Y+LR+RQ SCYCSKC VGAY++C+PAKKY+ +VG VK  SGK
Sbjct: 1421 MGAEVQEEESSGVSVEVQKESGV-----------PPLVGGENEVVVNPLRWQADESIVLTVPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPAKKYEGMVGMVKDVSGK 1518
[Close]
BLAST of mRNA_P-littoralis_Contig83.61.1 vs. uniprot
Match: A0A6H5KXK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK6_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.030e-17
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 2 
Query:  113 VGEEKELVANPSNWVGGRAFAQRLRA-SRKYQLRIRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGK 325
            VG EKE+VANP  W    +    L A +++Y+LR+RQ SCYCSKC VGAY++C+ AKKY  +VG VKT SGK
Sbjct:  275 VGGEKEVVANPQRWQADESTVLTLPAVTKRYKLRVRQASCYCSKCSVGAYDDCVSAKKYAGMVGMVKTVSGK 346
[Close]
BLAST of mRNA_P-littoralis_Contig83.61.1 vs. uniprot
Match: A0A6H5J993_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J993_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.530e-17
Identity = 51/110 (46.36%), Postives = 66/110 (60.00%), Query Frame = 2 
Query:    2 MGVEEEQQESRGVCVGVQTADGQVVANGEVTADNSVA-VGEEKELVANPSNWVGGRAFAQRLRA-SRKYQLRIRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGK 325
            MG E +++ES GV V             EV  +N V  VG EKE+VANP  W    +    L A +++Y+LR+RQ SC+ SKC VGAY +C+PAKKY  +VG VK  SGK
Sbjct:  205 MGAEVQEEESSGVGV-------------EVQLENDVPLVGGEKEVVANPQRWQADESTVLTLLAVTKRYKLRVRQASCHRSKCSVGAYNDCVPAKKYAGMVGMVKAVSGK 301
[Close]
BLAST of mRNA_P-littoralis_Contig83.61.1 vs. uniprot
Match: A0A6H5JJU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.250e-17
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = 2 
Query:    2 MGVEEEQQESRGVCVGVQTADGQVVANGEVTADNSVAVGEEKELVANPSNWVGGRAFAQRLRA-SRKYQLRIRQTSCYCSKCRVGAYEECIPAKKYKALVGKV 307
            MG E +++ES GV V VQT +G  +  GE            KE+VANP  W    +    L A +++Y+LR+RQ SCYCSKC VGAY++C+PAKKY   V  V
Sbjct:  127 MGAEVQEEESSGVGVEVQTENGVPLEGGE------------KEVVANPQRWQADESTVLTLPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPAKKYAGTVATV 217
[Close]
BLAST of mRNA_P-littoralis_Contig83.61.1 vs. uniprot
Match: A0A6H5KM72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM72_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.150e-13
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 2 
Query:    2 MGVEEEQQESRGVCVGVQTADGQVVANGEVTADNSVAVGEEKELVANPSNWVGGRAFAQRLRASRKYQLRIRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGK 325
            MG E +++ES GV V             EV  +N V + ++  ++  P+              +++Y+LR+RQ SCYCSKC VGAY++C+PAKKY  +VG VK  SGK
Sbjct:  335 MGAEVQEEESSGVGV-------------EVQKENGVLLADKSTVLTLPA-------------VTKRYKLRVRQASCYCSKCSVGAYDDCVPAKKYAGMVGMVKAVSGK 416
[Close]
BLAST of mRNA_P-littoralis_Contig83.61.1 vs. uniprot
Match: A0A6H5JIX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX4_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.850e-13
Identity = 29/45 (64.44%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:  191 SRKYQLRIRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGK 325
            +++Y+LR+RQ SCYCSKC VGAY++C+PAKKY+ +VG VK  SGK
Sbjct:  120 TKRYKLRVRQASCYCSKCSVGAYDDCVPAKKYEGMVGMVKAVSGK 164
[Close]
BLAST of mRNA_P-littoralis_Contig83.61.1 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 8.260e-13
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 2 
Query:   86 EVTADNSVAVGEEKELVANPSNWVGGRAFAQRLRA-SRKYQLRIRQTSCYCSKCRVGAYEECIPAKKY 286
            E ++  SV V +E  +VANP  W    +  + L A +++Y+LR+RQ SCYCSKC VGAY++C+PAKKY
Sbjct:  546 EESSGVSVEVQKESGVVANPQRWQADESIVRTLPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPAKKY 613
[Close]
BLAST of mRNA_P-littoralis_Contig83.61.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.540e-12
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 2 
Query:    2 MGVEEEQQESRGVCVGVQTADGQVVANGEVTADNSVAVGEEKELVANPSNWVGGRAFAQRL-RASRKYQLRIRQTSCYCSKCRVGAYEECIPAKK 283
            MG E +++ES GV V VQT +G  +            VG EKE+VANP  W    +    L   +++Y+LR+RQ SCYCS C VGAY++C+PAKK
Sbjct:  531 MGAEVQEEESSGVGVEVQTENGVPL------------VGGEKEVVANPQRWQADESTVLTLPTVTKRYKLRVRQASCYCS-CSVGAYDDCVPAKK 612
[Close]
BLAST of mRNA_P-littoralis_Contig83.61.1 vs. uniprot
Match: A0A6H5JJA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA7_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.260e-11
Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 2 
Query:    2 MGVEEEQQESRGVCVGVQTADGQVVANGEVTADNSVAVGEEKELVANPSNWVGGRAFAQRLRASRKYQLRIRQTSCYCSKCRVGAYEECIPAKKYKALVGKVKTASGKE 328
            MG E ++Q  R   +GV+ AD  VV          V  G E    ANP   V G A     + +RKY  R+R+ SCYCSKCRVG+Y +C+ AK Y  +VGKV   SGK+
Sbjct:   77 MGAENQEQRLRS-SLGVEPADSGVV----------VVAGNEH---ANPGPEVVGPAPRPE-KVTRKYTCRVRKASCYCSKCRVGSYPDCMVAKNYPEIVGKVHEKSGKD 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig83.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KT99_9PHAE8.600e-1844.95Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE8.820e-1844.95MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KXK6_9PHAE2.030e-1756.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J993_9PHAE2.530e-1746.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJU0_9PHAE3.250e-1745.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM72_9PHAE1.150e-1338.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIX4_9PHAE2.850e-1364.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXG9_9PHAE8.260e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K491_9PHAE1.540e-1245.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJA7_9PHAE1.260e-1143.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig83contigP-littoralis_Contig83:181908..182241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size334
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791689.4090157-UTR-P-littoralis_Contig83:181907..1819081680791689.4090157-UTR-P-littoralis_Contig83:181907..181908Pylaiella littoralis U1_48UTRP-littoralis_Contig83 181908..181908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791689.4232-CDS-P-littoralis_Contig83:181908..1822411680791689.4232-CDS-P-littoralis_Contig83:181908..182241Pylaiella littoralis U1_48CDSP-littoralis_Contig83 181909..182241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig83.61.1prot_P-littoralis_Contig83.61.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig83 181909..182241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig83.61.1

>prot_P-littoralis_Contig83.61.1 ID=prot_P-littoralis_Contig83.61.1|Name=mRNA_P-littoralis_Contig83.61.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
MGVEEEQQESRGVCVGVQTADGQVVANGEVTADNSVAVGEEKELVANPSN
WVGGRAFAQRLRASRKYQLRIRQTSCYCSKCRVGAYEECIPAKKYKALVG
KVKTASGKENP
back to top

mRNA from alignment at P-littoralis_Contig83:181908..182241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig83.61.1 ID=mRNA_P-littoralis_Contig83.61.1|Name=mRNA_P-littoralis_Contig83.61.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=334bp|location=Sequence derived from alignment at P-littoralis_Contig83:181908..182241+ (Pylaiella littoralis U1_48)
CATGGGGGTAGAGGAGGAACAGCAGGAGAGTCGGGGTGTTTGTGTAGGTG
TGCAGACAGCAGACGGCCAAGTCGTAGCAAACGGTGAGGTGACGGCAGAC
AACAGTGTCGCCGTTGGCGAGGAGAAGGAACTAGTGGCTAATCCCAGCAA
CTGGGTAGGGGGTCGGGCTTTTGCTCAGCGCCTCAGGGCCTCGAGGAAGT
ATCAGCTTCGTATTCGCCAAACATCGTGTTACTGTTCGAAGTGCAGGGTG
GGGGCATACGAGGAGTGTATCCCAGCCAAAAAATATAAGGCGTTGGTAGG
CAAGGTGAAGACCGCATCGGGGAAAGAGAACCCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig83:181908..182241+

>mRNA_P-littoralis_Contig83.61.1 ID=mRNA_P-littoralis_Contig83.61.1|Name=mRNA_P-littoralis_Contig83.61.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig83:181908..182241+ (Pylaiella littoralis U1_48)
ATGGGGGTAGAGGAGGAACAGCAGGAGAGTCGGGGTGTTTGTGTAGGTGT
GCAGACAGCAGACGGCCAAGTCGTAGCAAACGGTGAGGTGACGGCAGACA
ACAGTGTCGCCGTTGGCGAGGAGAAGGAACTAGTGGCTAATCCCAGCAAC
TGGGTAGGGGGTCGGGCTTTTGCTCAGCGCCTCAGGGCCTCGAGGAAGTA
TCAGCTTCGTATTCGCCAAACATCGTGTTACTGTTCGAAGTGCAGGGTGG
GGGCATACGAGGAGTGTATCCCAGCCAAAAAATATAAGGCGTTGGTAGGC
AAGGTGAAGACCGCATCGGGGAAAGAGAACCCG
back to top