mRNA_P-littoralis_Contig83.59.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig83.59.1
Unique NamemRNA_P-littoralis_Contig83.59.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig83.59.1 vs. uniprot
Match: A0A6H5KQS4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 6.150e-9
Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:   67 IDRAVKIAGQDRLVRQQWRKEGRAGFRLRSVLLAKNTKKPLGGALTAVVADRDALVTRGKEHVEAIRERAEKIQSKSAAVAEAGEAPLPRKRATADTEVAATDPLEAEQHSG 402
            +DR + + G+ R+VRQ  +K  R G  L S LL K T K  G  L++VVAD D L  +G+EH EAI+ERA K  ++ AA           KR  AD  VA +DPL A  H G
Sbjct:    3 VDRIIHVRGEKRVVRQHRKKHNR-GILLTSWLLKKGTTKAAGSKLSSVVADEDQLREKGREHAEAIQERASKRGNQQAAXXXXXXXSGKGKRKGAD--VALSDPL-ALAHDG 110
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BLAST of mRNA_P-littoralis_Contig83.59.1 vs. uniprot
Match: A0A6H5KK37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK37_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 6.770e-7
Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:   85 IAGQDRLVRQQWRKEGRAGFRLRSVLLAKNTKKPLGGALTAVVADRDALVTRGKEHVEAIRERAEKIQSKSAAVAEAGEAPLPRKRATADTEVAATDPLEAEQHSG 402
            + G+ R+VRQ  +K  R G  L S LL K T K  G  L++VVAD D L  +G+EH EAI+ERA K  ++ AA           KR  AD  VA +DPL A  H G
Sbjct:    3 VRGEKRVVRQHRKKHNR-GILLTSWLLKKGTTKAAGSKLSSVVADEDQLREKGREHAEAIQERASKRGNQQAAXXXXXXXSGKGKRKGAD--VALSDPL-ALAHDG 104
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig83.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQS4_9PHAE6.150e-943.75Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK37_9PHAE6.770e-744.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig83contigP-littoralis_Contig83:178630..179031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size402
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791689.3657346-CDS-P-littoralis_Contig83:178629..1790311680791689.3657346-CDS-P-littoralis_Contig83:178629..179031Pylaiella littoralis U1_48CDSP-littoralis_Contig83 178630..179031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig83.59.1prot_P-littoralis_Contig83.59.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig83 178630..179031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig83.59.1

>prot_P-littoralis_Contig83.59.1 ID=prot_P-littoralis_Contig83.59.1|Name=mRNA_P-littoralis_Contig83.59.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
SSPSDSRLVDRNMSSAASAKNKIDRAVKIAGQDRLVRQQWRKEGRAGFRL
RSVLLAKNTKKPLGGALTAVVADRDALVTRGKEHVEAIRERAEKIQSKSA
AVAEAGEAPLPRKRATADTEVAATDPLEAEQHSG
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mRNA from alignment at P-littoralis_Contig83:178630..179031+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig83.59.1 ID=mRNA_P-littoralis_Contig83.59.1|Name=mRNA_P-littoralis_Contig83.59.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig83:178630..179031+ (Pylaiella littoralis U1_48)
TCTAGCCCCTCAGACAGCAGGCTCGTGGATAGAAATATGTCGTCGGCAGC
TTCCGCAAAAAACAAAATTGATCGTGCTGTCAAGATTGCGGGACAAGACC
GACTCGTCAGGCAGCAATGGAGGAAGGAGGGCCGTGCAGGCTTCCGCCTG
AGGTCCGTGCTTCTGGCCAAGAACACCAAGAAGCCCCTTGGCGGTGCCTT
GACGGCGGTGGTGGCGGACCGGGATGCACTGGTGACGCGTGGGAAGGAGC
ACGTGGAAGCGATCCGGGAACGAGCTGAGAAAATCCAGAGCAAATCAGCA
GCAGTAGCAGAAGCAGGTGAAGCGCCGCTTCCGCGAAAGCGCGCCACCGC
CGACACAGAAGTCGCTGCAACGGACCCTTTGGAGGCGGAGCAGCACAGCG
GG
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Coding sequence (CDS) from alignment at P-littoralis_Contig83:178630..179031+

>mRNA_P-littoralis_Contig83.59.1 ID=mRNA_P-littoralis_Contig83.59.1|Name=mRNA_P-littoralis_Contig83.59.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig83:178630..179031+ (Pylaiella littoralis U1_48)
TCTAGCCCCTCAGACAGCAGGCTCGTGGATAGAAATATGTCGTCGGCAGC
TTCCGCAAAAAACAAAATTGATCGTGCTGTCAAGATTGCGGGACAAGACC
GACTCGTCAGGCAGCAATGGAGGAAGGAGGGCCGTGCAGGCTTCCGCCTG
AGGTCCGTGCTTCTGGCCAAGAACACCAAGAAGCCCCTTGGCGGTGCCTT
GACGGCGGTGGTGGCGGACCGGGATGCACTGGTGACGCGTGGGAAGGAGC
ACGTGGAAGCGATCCGGGAACGAGCTGAGAAAATCCAGAGCAAATCAGCA
GCAGTAGCAGAAGCAGGTGAAGCGCCGCTTCCGCGAAAGCGCGCCACCGC
CGACACAGAAGTCGCTGCAACGGACCCTTTGGAGGCGGAGCAGCACAGCG
GG
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