mRNA_P-littoralis_Contig83.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig83.3.1
Unique NamemRNA_P-littoralis_Contig83.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig83.3.1 vs. uniprot
Match: A0A6H5KRU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU1_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.890e-24
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 SVVFEAICDHAGRIIASTKGYPGAENDITVVKRDLSVNRTQHEEPWASYKYELYGLDGTSSWH 189
            +VVFEAICDHAGRI+ASTKGYPGAEND TVV+RDLSV R + EEPW SYKYE+Y   G  + H
Sbjct:   79 TVVFEAICDHAGRILASTKGYPGAENDKTVVQRDLSVRRVEGEEPWVSYKYEMYDETGDVTEH 141
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BLAST of mRNA_P-littoralis_Contig83.3.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.710e-23
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 SVVFEAICDHAGRIIASTKGYPGAENDITVVKRDLSVNRTQHEEPWASYKYELYGLDGTSSWH 189
            +VVFEAICDHAGRI+ASTKGYPGAEND TVV+RDLSV R + EEPW SYKYE+Y   G  + H
Sbjct:  311 TVVFEAICDHAGRILASTKGYPGAENDKTVVQRDLSVRRVEGEEPWVSYKYEMYDETGDVTEH 373
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BLAST of mRNA_P-littoralis_Contig83.3.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.840e-21
Identity = 41/63 (65.08%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 SVVFEAICDHAGRIIASTKGYPGAENDITVVKRDLSVNRTQHEEPWASYKYELYGLDGTSSWH 189
            ++V+EA CDH+GRI++STKG+PGAEND TVVKRDLSV R + EEPWASYK+ L+ L+G ++ H
Sbjct:  213 TLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWASYKFVLFDLEGNTTEH 275
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BLAST of mRNA_P-littoralis_Contig83.3.1 vs. uniprot
Match: A0A6H5K8G0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8G0_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.040e-21
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 SVVFEAICDHAGRIIASTKGYPGAENDITVVKRDLSVNRTQHEEPWASYKYELYGLDGTSSWH 189
            ++V+EA CDH+GRI++STKG+PGAEND TVVKRDLSV R + EEPWA YK+ L+ L+G ++ H
Sbjct:  201 TLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWARYKFVLFDLEGNTTEH 263
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BLAST of mRNA_P-littoralis_Contig83.3.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.150e-11
Identity = 35/63 (55.56%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 SVVFEAICDHAGRIIASTKGYPGAENDITVVKRDLSVNRTQHEEPWASYKYELYGLDGTSSWH 189
            +VVFEAICDHAGRI+ASTKGYPGAEND TVV                 YKYE+Y   G  + H
Sbjct:  106 TVVFEAICDHAGRILASTKGYPGAENDKTVV----------------IYKYEMYDETGDVTKH 152
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BLAST of mRNA_P-littoralis_Contig83.3.1 vs. uniprot
Match: A0A6H5KEH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 3.800e-7
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   76 NDITVVKRDLSVNRTQHEEPWASYKYELYGLDGTSSWH 189
            ND TVVKRDLSV R + EEPWASYK+ L+ L+G ++ H
Sbjct:  234 NDKTVVKRDLSVLRMREEEPWASYKFVLFDLEGNTTEH 271
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BLAST of mRNA_P-littoralis_Contig83.3.1 vs. uniprot
Match: A0A6H5KZ66_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ66_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.070e-6
Identity = 21/58 (36.21%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    1 SVVFEAICDHAGRIIASTKGYPGAENDITVVKRDLSVNRTQHEEPWASYKYELYGLDG 174
            S+ ++AI DH GR++A TKG+PGA ND T+++ D +V   + +  +      L+  +G
Sbjct:   37 SIAYQAIVDHTGRVLAVTKGFPGAMNDKTIIRYDTAVAMIRRDPVYTEKVNTLFDENG 94
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig83.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KRU1_9PHAE2.890e-2473.02Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L0H2_9PHAE2.710e-2373.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE2.840e-2165.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8G0_9PHAE4.040e-2163.49DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JY35_9PHAE4.150e-1155.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEH6_9PHAE3.800e-763.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ66_9PHAE5.070e-636.21DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig83contigP-littoralis_Contig83:4434..4624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size193
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.13e-06
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size189
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791687.5100992-CDS-P-littoralis_Contig83:4433..46221680791687.5100992-CDS-P-littoralis_Contig83:4433..4622Pylaiella littoralis U1_48CDSP-littoralis_Contig83 4434..4622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig83.3.1prot_P-littoralis_Contig83.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig83 4434..4622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig83.3.1

>prot_P-littoralis_Contig83.3.1 ID=prot_P-littoralis_Contig83.3.1|Name=mRNA_P-littoralis_Contig83.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
SVVFEAICDHAGRIIASTKGYPGAENDITVVKRDLSVNRTQHEEPWASYK
YELYGLDGTSSWH
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mRNA from alignment at P-littoralis_Contig83:4434..4624+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig83.3.1 ID=mRNA_P-littoralis_Contig83.3.1|Name=mRNA_P-littoralis_Contig83.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=191bp|location=Sequence derived from alignment at P-littoralis_Contig83:4434..4624+ (Pylaiella littoralis U1_48)
TCGGTTGTGTTCGAGGCGATTTGTGACCACGCTGGCCGCATCATCGCGTC
GACGAAGGGGTACCCCGGGGCGGAGAACGACATAACGGTGGTCAAGCGCG
ACTTGTCCGTCAACCGGACCCAACACGAGGAGCCGTGGGCGAGCTACAAG
TACGAGCTATACGGTCTTGATGGCACGAGTTCGTGGCACAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig83:4434..4624+

>mRNA_P-littoralis_Contig83.3.1 ID=mRNA_P-littoralis_Contig83.3.1|Name=mRNA_P-littoralis_Contig83.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig83:4434..4624+ (Pylaiella littoralis U1_48)
TCGGTTGTGTTCGAGGCGATTTGTGACCACGCTGGCCGCATCATCGCGTC
GACGAAGGGGTACCCCGGGGCGGAGAACGACATAACGGTGGTCAAGCGCG
ACTTGTCCGTCAACCGGACCCAACACGAGGAGCCGTGGGCGAGCTACAAG
TACGAGCTATACGGTCTTGATGGCACGAGTTCGTGGCAC
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