mRNA_P-littoralis_Contig83.132.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig83.132.1
Unique NamemRNA_P-littoralis_Contig83.132.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig83.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig83contigP-littoralis_Contig83:551955..552380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size426
Hectar predicted targeting categorysignal peptide
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791687.3401132-UTR-P-littoralis_Contig83:551954..5519701680791687.3401132-UTR-P-littoralis_Contig83:551954..551970Pylaiella littoralis U1_48UTRP-littoralis_Contig83 551955..551970 -
1680791687.3653178-UTR-P-littoralis_Contig83:552285..5523801680791687.3653178-UTR-P-littoralis_Contig83:552285..552380Pylaiella littoralis U1_48UTRP-littoralis_Contig83 552286..552380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791687.3551724-CDS-P-littoralis_Contig83:551970..5522851680791687.3551724-CDS-P-littoralis_Contig83:551970..552285Pylaiella littoralis U1_48CDSP-littoralis_Contig83 551971..552285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig83.132.1prot_P-littoralis_Contig83.132.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig83 551971..552285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig83.132.1

>prot_P-littoralis_Contig83.132.1 ID=prot_P-littoralis_Contig83.132.1|Name=mRNA_P-littoralis_Contig83.132.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MTAVLLLSLSNFFSCAFHRLTHHVSMVSRFRFVQKLKTGSALAEGNYILS
VSKNILGRRQWRQDVRYIVLCWWLRSRWTRRRATISRDTWLVIKRESKAT
AAAL*
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mRNA from alignment at P-littoralis_Contig83:551955..552380-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig83.132.1 ID=mRNA_P-littoralis_Contig83.132.1|Name=mRNA_P-littoralis_Contig83.132.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig83:551955..552380- (Pylaiella littoralis U1_48)
GTTTATTGTTTCTTCTCCTACCTGTCCTGTTCTTCTTTCCTTGTCTTCTT
TGTCTTGTTTGGAACGCGGGGTCTTCTTGTGTTTTATTTCTTGTGATGAC
TGCTGTCCTTCTTCTCTCCTTGTCTAATTTTTTTTCTTGCGCCTTTCACC
GGCTCACACATCACGTCTCTATGGTCTCGCGATTTCGCTTCGTCCAAAAA
TTAAAAACTGGAAGCGCCCTTGCAGAGGGCAATTATATTTTATCTGTATC
AAAGAACATACTCGGGAGAAGGCAATGGAGACAAGACGTACGATATATTG
TCCTGTGCTGGTGGTTGAGAAGCCGATGGACTAGACGGCGCGCAACCATA
TCACGCGATACATGGTTGGTTATCAAACGAGAATCGAAAGCTACTGCTGC
TGCGCTGTAAAGGCAGCATGGTGGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig83:551955..552380-

>mRNA_P-littoralis_Contig83.132.1 ID=mRNA_P-littoralis_Contig83.132.1|Name=mRNA_P-littoralis_Contig83.132.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig83:551955..552380- (Pylaiella littoralis U1_48)
ATGACTGCTGTCCTTCTTCTCTCCTTGTCTAATTTTTTTTCTTGCGCCTT
TCACCGGCTCACACATCACGTCTCTATGGTCTCGCGATTTCGCTTCGTCC
AAAAATTAAAAACTGGAAGCGCCCTTGCAGAGGGCAATTATATTTTATCT
GTATCAAAGAACATACTCGGGAGAAGGCAATGGAGACAAGACGTACGATA
TATTGTCCTGTGCTGGTGGTTGAGAAGCCGATGGACTAGACGGCGCGCAA
CCATATCACGCGATACATGGTTGGTTATCAAACGAGAATCGAAAGCTACT
GCTGCTGCGCTGTAA
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