mRNA_P-littoralis_Contig829.21.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig829.21.2
Unique NamemRNA_P-littoralis_Contig829.21.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig829.21.2 vs. uniprot
Match: D8LGR3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGR3_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 3.720e-72
Identity = 113/130 (86.92%), Postives = 122/130 (93.85%), Query Frame = 2 
Query:  452 MVEFSPMPVIFVASVLYTISAFDAESA-GDGTKAWAILCGFVSSVVGGVLAFLQARGKGDIVHKFQKFIALFFFIWWTLGAGIGTFKGPFTISGNGYFAGWIAFAASLKYAYGTNDAVRGFADRAAGAMK 838
            MVEFSP+PV+FV+SVLYTISAFDAE   G+GTKAWAI CG +SS + G+LAFLQARGKGD+VHKFQKFIALFFF+WWTLGAGIGTFKGPFTISGNGYFAGWIAFAASLKYAYGTNDAVRGFADRAA AMK
Sbjct:    1 MVEFSPLPVLFVSSVLYTISAFDAEGGDGNGTKAWAIFCGLISSFISGILAFLQARGKGDMVHKFQKFIALFFFLWWTLGAGIGTFKGPFTISGNGYFAGWIAFAASLKYAYGTNDAVRGFADRAADAMK 130
[Close]
BLAST of mRNA_P-littoralis_Contig829.21.2 vs. uniprot
Match: A0A836C9Z2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Z2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.460e-23
Identity = 55/138 (39.86%), Postives = 82/138 (59.42%), Query Frame = 2 
Query:  452 MVEFSPMPVIFVASVLYTISAF---DAESAGDGTKAWAILCGFVSSVVGGVLAFLQARGKGDIVHKFQKFIALFFFIWWTLGAGIGTFKGPFTISGNGYFAGWIAFAASLKYAYGTNDAVRGFADRAAGAMKVGPNHD 856
            M     +P++F AS++Y I++    D +++  GT A+A+  G VS  +  +L  L+   K D++    KF+A F F+WW +GA +GTF GPFT+  NGYF+ W  F  + +YAY ++D VR   DR A AM  GP  D
Sbjct:    1 MTSMQGVPLLFAASLVYVIASSINCDNKNSCKGTDAYAVSVGMVSLGITSLLIGLRVVSKEDMLEGKHKFLATFLFLWWGVGAAVGTFDGPFTVVSNGYFSAWAGFLFATQYAYASSDVVRNVLDRGASAM--GPKDD 136
[Close]
BLAST of mRNA_P-littoralis_Contig829.21.2 vs. uniprot
Match: A0A835ZAN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN8_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.800e-22
Identity = 54/127 (42.52%), Postives = 76/127 (59.84%), Query Frame = 2 
Query:  470 MPVIFVASVLYTISAFD--AESAGDGTKAWAILCGFVSSVVGGVLAFLQARGKGDIVHKFQKFIALFFFIWWTLGAGIGTFKGPFTISGNGYFAGWIAFAASLKYAYGTNDAVRGFADRAAGAMKVG 844
            +P++F AS++Y I+A          G++ +AI+ G VS  +  +L  ++A  +  +V K  KFI+LF F+WW +GA +GTF GPFT  GNGYFA W AF  S +YAY  +  VR   DR A A   G
Sbjct:    4 VPLLFAASLVYVIAASIQCTHHTCTGSRGYAIVVGVVSLFITTLLIVIRAIKQAAMVDKMHKFISLFLFVWWGVGAAVGTFNGPFTDVGNGYFAAWAAFLFSTQYAYSASQIVRNMLDRGANAAMGG 130
[Close]
BLAST of mRNA_P-littoralis_Contig829.21.2 vs. uniprot
Match: A0A835YEI7_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YEI7_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-7
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 2 
Query:  479 IFVASVLYTISAF---DAESAGDGTKAWAILCGFVSSVVGGVLAFLQARGKGDIVHKFQKFIALFFFIWWTLGAGIGTFKGPFTISGNGYFAGWIAFAASLKY 778
            I +ASV+   +A    D  +       +A+  G +S+ +  + A L +  K  +  KF  FI+ F  +WW  GAG+ TF+ PF + GNGY+A WIA  ASL +
Sbjct:   21 ILLASVVELTAACILCDETNYCKSYNGYAVALGTISTFLALMHAILCSF-KPVLADKFGPFISTFLVLWWIPGAGVCTFRNPFLVPGNGYYACWIALLASLVF 122
[Close]
BLAST of mRNA_P-littoralis_Contig829.21.2 vs. uniprot
Match: A0A7S3YKB0_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YKB0_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 9.880e-6
Identity = 36/103 (34.95%), Postives = 51/103 (49.51%), Query Frame = 2 
Query:  482 FVASVLYTISAFDAESAGDGTKAWAILCGFVSSVVGGVLAFLQARGK--GDIVHKFQKFIALFFFIWWTLGAGIGTFKGPFTISGNGYFAGWIAFAASLKYAY 784
            FV  V  +I    A +  D  + WA+    +S +  GV   L+       DI+       A F  + W+ GAG+ TF+ PFT +GNGYFA W+A+ AS    Y
Sbjct:   90 FVVMVEASIECDRANNCSD-ERGWAVTVSVISIICTGVAIALEMYTDVCSDIIGVI---FAFFLLLLWSGGAGVLTFRAPFTATGNGYFASWLAWFASAYLVY 188
[Close]
BLAST of mRNA_P-littoralis_Contig829.21.2 vs. uniprot
Match: A0A0G4I317_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I317_9ALVE)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-5
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 2 
Query:  548 AWAILCGFVSSVVGGVLAFLQARGKGDIVHKFQKFIALFFFIWWTLGAGIGTFKGPFTISGNGYFAGWIA 757
            A+A+  G VS VV  +L  +  R   +   K + ++++F  IWW  GA + TF+ PF ++GNGYFA W A
Sbjct:   43 AYAVAVGCVS-VVCVLLQLILNRAAKNAAPKVEPWMSVFLIIWWIPGASVLTFRSPFVVAGNGYFASWAA 111
[Close]
BLAST of mRNA_P-littoralis_Contig829.21.2 vs. uniprot
Match: B8BYB8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYB8_THAPS)

HSP 1 Score: 57.4 bits (137), Expect = 1.960e-5
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 2 
Query:  566 GFVSSVVGGVLAFLQARGKGDIVHKFQKFIALFFFIWWTLGAGIGTFKGPFTISGNGYFAGWIAFAASLKYAYG 787
            GF+  VV      ++ R  G   H  +K  ++F  IWW +G GI TF+GPF  + NG+FA W    A+++++ G
Sbjct:  108 GFLERVV------IKQREDGRGGHTIEKICSVFLLIWWLIGTGIITFRGPFVETSNGWFAAWGGLLATIRWSVG 175
[Close]
BLAST of mRNA_P-littoralis_Contig829.21.2 vs. uniprot
Match: A0A7S4DJZ8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DJZ8_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 2.070e-5
Identity = 36/103 (34.95%), Postives = 51/103 (49.51%), Query Frame = 2 
Query:  482 FVASVLYTISAFDAESAGDGTKAWAILCGFVSSVVGGVLAFLQARGK--GDIVHKFQKFIALFFFIWWTLGAGIGTFKGPFTISGNGYFAGWIAFAASLKYAY 784
            FV  V  +I    A +  D  + WA+    +S +  GV   L+       DI+       A F  + W+ GAG+ TF+ PFT +GNGYFA W+A+ AS    Y
Sbjct:   90 FVVMVEASIECDRANNCSD-ERGWAVTVSVISIICTGVAIALEMYTDVCSDIIGVI---FAFFLLLLWSGGAGVLTFRAPFTATGNGYFASWLAWFASAYLVY 188
[Close]
BLAST of mRNA_P-littoralis_Contig829.21.2 vs. uniprot
Match: A0A7S2TU79_9EUKA (Hypothetical protein n=2 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TU79_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 3.530e-5
Identity = 35/107 (32.71%), Postives = 54/107 (50.47%), Query Frame = 2 
Query:  476 VIFVASVLYTISAFDAESAGDGT--KAWAILCGFVSSVVGGVLAFLQ--ARGKGDIVHKFQKFIALFFFIWWTLGAGIGTFKGPFTISGNGYFAGWIAFAASLKYAY 784
            ++ ++ V+   +A + + A D +  + WA+  G VS +  GV   L        D++     F  L     W+ GAG+ TF+ PFT +GNGYFA W A+ AS    Y
Sbjct:   81 ILVMSFVVMVEAAIECDRANDCSDERGWAVTVGVVSIISSGVALILDIYTDACSDVMGVIFSFYMLAL---WSAGAGVLTFRAPFTRTGNGYFASWGAWLASAYLVY 184
[Close]
BLAST of mRNA_P-littoralis_Contig829.21.2 vs. uniprot
Match: A0A6U2XH29_9EUKA (Hypothetical protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A6U2XH29_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 3.710e-5
Identity = 36/103 (34.95%), Postives = 51/103 (49.51%), Query Frame = 2 
Query:  482 FVASVLYTISAFDAESAGDGTKAWAILCGFVSSVVGGVLAFLQARGK--GDIVHKFQKFIALFFFIWWTLGAGIGTFKGPFTISGNGYFAGWIAFAASLKYAY 784
            FV  V  +I    A +  D  + WA+    +S +  GV   L+       DI+       A F  + W+ GAG+ TF+ PFT +GNGYFA W+A+ AS    Y
Sbjct:   90 FVVMVEASIECDRANNCSD-ERGWAVTVSVISIICTGVAIALEMYTDVCSDIIGVI---FAFFLLLLWSGGAGVLTFRAPFTATGNGYFASWLAWFASAYLVY 188
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig829.21.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LGR3_ECTSI3.720e-7286.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9Z2_9STRA1.460e-2339.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAN8_9STRA1.800e-2242.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YEI7_9CHLO1.170e-735.92Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7S3YKB0_9EUKA9.880e-634.95Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A0G4I317_9ALVE1.270e-540.00Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
B8BYB8_THAPS1.960e-536.49Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S4DJZ8_9EUKA2.070e-534.95Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S2TU79_9EUKA3.530e-532.71Hypothetical protein n=2 Tax=Lotharella oceanica T... [more]
A0A6U2XH29_9EUKA3.710e-534.95Hypothetical protein n=3 Tax=Lotharella globosa Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig829contigP-littoralis_Contig829:70814..82451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGR3
Model size1379
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons5
Evalue1.48e-76
EggNOG OGs2E4HK@1|root,2SBRH@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_005330.1
Cds size561
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig829.21.2prot_P-littoralis_Contig829.21.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig829 76201..82084 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791686.5100005-UTR-P-littoralis_Contig829:70813..711331680791686.5100005-UTR-P-littoralis_Contig829:70813..71133Pylaiella littoralis U1_48UTRP-littoralis_Contig829 70814..71133 +
1680791686.5265064-UTR-P-littoralis_Contig829:76069..762001680791686.5265064-UTR-P-littoralis_Contig829:76069..76200Pylaiella littoralis U1_48UTRP-littoralis_Contig829 76070..76200 +
1680791686.5882573-UTR-P-littoralis_Contig829:82084..824511680791686.5882573-UTR-P-littoralis_Contig829:82084..82451Pylaiella littoralis U1_48UTRP-littoralis_Contig829 82085..82451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791686.5381591-CDS-P-littoralis_Contig829:76200..762451680791686.5381591-CDS-P-littoralis_Contig829:76200..76245Pylaiella littoralis U1_48CDSP-littoralis_Contig829 76201..76245 +
1680791686.551201-CDS-P-littoralis_Contig829:79217..793311680791686.551201-CDS-P-littoralis_Contig829:79217..79331Pylaiella littoralis U1_48CDSP-littoralis_Contig829 79218..79331 +
1680791686.5615242-CDS-P-littoralis_Contig829:80596..806781680791686.5615242-CDS-P-littoralis_Contig829:80596..80678Pylaiella littoralis U1_48CDSP-littoralis_Contig829 80597..80678 +
1680791686.5752957-CDS-P-littoralis_Contig829:81764..820841680791686.5752957-CDS-P-littoralis_Contig829:81764..82084Pylaiella littoralis U1_48CDSP-littoralis_Contig829 81765..82084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig829.21.2

>prot_P-littoralis_Contig829.21.2 ID=prot_P-littoralis_Contig829.21.2|Name=mRNA_P-littoralis_Contig829.21.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp
MVEFSPMPVIFVASVLYTISAFDAESAGDGTKAWAILCGFVSSVVGGVLA
FLQARGKGDIVHKFQKFIALFFFIWWTLGAGIGTFKGPFTISGNGYFAGW
IAFAASLKYAYGTNDAVRGFADRAAGAMKVGPNHDSCGVCFFAVIFIFFG
RSGSTDKCRVLGVTSVFPSCRSSSSSDVEAVVAVRV*
back to top

mRNA from alignment at P-littoralis_Contig829:70814..82451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig829.21.2 ID=mRNA_P-littoralis_Contig829.21.2|Name=mRNA_P-littoralis_Contig829.21.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=11638bp|location=Sequence derived from alignment at P-littoralis_Contig829:70814..82451+ (Pylaiella littoralis U1_48)
CCGGCTGGAGCGGGTGGAGTGTTGTCTGTCCGTCTGTGTTTCTGATCTGT
CCATCTATCGGTCTTATCTGTCTGTCTACGTATCTGTCTGCTAGTTCTCT
AAGTCTCTTTCGCTTCTCTGTATCATCATGCTTGTGTTCTCTCATCGACA
AAAGCGGTGACAGGCGACCCGCACACCTATGCATACCGACCCGCCATCCT
ATAGCCCGCCAAAATATCTCTGCCGCGGAGTGCAGCGTAAATTTGAGGGT
ACGTGTGACTGCTCGAGACGAGACAGACCAACCAGCGTGTGAATTCTCCT
GCACGCCCGGGGCGTGTGCGGTGAGAGTGCGGCGGCCGGCTGGCTGCCAA
CACACAAGAGTCCCCTCCTTCCCCGTAAATTGCTTTAGATTTATTTTGTT
TCCTTCTCCACCGAGGCAATACTCTTTGTTGCGATCTGGACAGCAGCTGG
CCGCGCTCCCTTTCTTTTTTCAAGTCATTCATATAACACCCGTGGGATAA
ATCTTCTCTCAAAAAAAAAGGGCGCCATTCTCAAATATAAAAGTTTCCGT
TTCTCATGATGTCGTCAAGAAGCTATGTCGTCTCCAGAGGAGCGGCTCTG
TCTTGCTGTACAGGGAATACCTTTGTGTTGTGTATACAGAGACTGACATC
GTTGTGTAGAAACACCGCAGCGCGCGATGGCTGGGTCCGTGCTGCACTGT
GTGCGTTTTGCGCATCCCCTCCCCCGCAATAAAGTCATCTGTGCGTTCGC
TTCTTTTTTCTTAGTTGTCTTCCCTCTCACGTACCTGGCACACCACCTCC
CCGATTTCCTCTCTACTCTGTACAGAGCATTACGCACGGAGGCAGGACTC
TCTACTTCACACAGAAAGTGTTGCACGTGTTCGCTGCGTATTCCCCTCCC
CCTCTTTGCAATTGCTCGTTTAGGATACCATACGTATGATAATACAGACG
ATGTTTTACGTAACGCTGCTGCGAGCCTCCGTTGATTCTGCTCTATCCTG
CTGCTGTATAATAGATACGTTGTATTGTTCGTTCAGTGATTTACCGCAGC
AGTATTCTATGTGTCGTTGTTGTTGTCTTGGCCAGACATGGCTTGGCCCT
TTTTTTTTTTTTAACTTACAAAAAATATCAATGTGTTAGCCTCTCTCCAG
ACGAGGGTCTGGAGTAGATATTGCAACGAACACGAAGAATAACAAGGTAC
ATCTACCAGTGTTTCTATAACTCATCATCCCCTCTTGAAACTATCATCAA
ATCAACAGCAGTCACATCGTATAATACATACTTCGAAGTACAAACGCTGT
AGCATCCGGCAGTCCGAGCAGTACAACTTTCGAAGTTGGACACATTTTTT
TTGGAGTTTCATCAGCGAGAACAACAATTACGAGAATTACACCCTCAGAT
GTGCACAAAGGCGATGTCGGGTTTTTCTTGAAACAAAATACGAGAAGTAA
ACCACAAAAGGTGCTCAAGTGCTGGGCAGTCTCTGTGTACCTGCTGTGTC
TTTGTCAGAAACTGTTGTCGGAGTGACTATTACAGCAGTACTCCTGTAGT
GCAGTAATGCCCCGTCCAATTTTCTTCGAAACCAGGTTTGCTGCTTACGG
CGGTGATTCTGGTATTTTTCATTGTTTCGTTCTCGAGCAGCACTTGTCTT
GCAGTTTGTTGTTTGTTCTGCGCACCCATCGATCAGCTCAAATTCAACCA
GCCATCATTGTGGCGAGCAAAAACATCAATGACATTGTGCGCCGAGGTCC
TGAGATTTAGCAGGCTGCTGAGAGAGATCCAGCGCTCGATCGGGTCCTTT
TTTTTTATTTCTCAAAAGTATTCTCTCCTCTCAAGACGAGGATCCAGAGT
GCAGCAGATCACGTCGCACTATTCGAACAGAGCAGGATAAATTCTGTAAC
TACTGTTCATTTTTACTCTGCTTACCTTGCCGTGGCATGTTTTGATCCTC
GCACACAATAGATACTTCGTATGTCATGTGTATAGTAGCGCGAGATCGAT
CGAGGTGATCGTGAAATCAACGTTCTTTCAGCATCATTGTCTTCCGGGCA
GAAATCGATGAAAAATGAAAAATCCCAGGACACTGCTGTGCTTCATGCTT
CATTCAGTGGACACAGCGCAGGCTCGTCACGAGTCACAAGCAACCACACT
GCTACACTGCTGGAAAGTGCCACAGCCGACAGATATGGTGGACGAGAAAC
GCCCCATGCCTAGACAGACGGCAAGCAGCAGGCAGCCAGAAGCGATTCTG
GGGGTACAGCAGTATTCCTCGGAACTTGTGAAGTTGTATCTAGATGAAGC
GGCCCGAAATTGCCCCGCACTTGGAGATCTGCTTGGTGTGATGGTGCGAA
GCTACCGTTCTACGCTTGTATGTCCCCGATTCACGGGCAAGTTGGACTTG
AATTTAGGTGGTTTACCGGGCTAGCATATTCAGTAGACACATCCGTAAGA
GACTTTGAGTCAGCGGAGACATAGTATGAAAATTGGTAAAAATGGAAATT
CGGTCGACCCCGTAAAAAATAAAAGACAAATGCTCCAGAAAAACGATTTC
CTGTTGATTTTTATCTTCGTTTTTATTTTTCGTCCCCTCTAGAGAAGGCT
GCGGTATTGCAAACCCCGCGTCTGTCGTTGTTTGTTGTTGTCTTCACATT
AACACATGTATGTGCTGCTGCCTATAGAAAAATCGCCATTTTTTTTTTAT
AGCGACAAAAATTGTCGTTGCACGGAGCCCCCGTCGTCGATTTTCCTGTG
ACACATGCACATCAATCTGCTGGTTCTCGAGCTGTAGGGATGATCCACAA
TTACACCAATGTTTTTTGGGTAGTGCATCGACCAAGGTACACACTCTGTG
AGTTTCAGCCCATTTGGGTTTTCTCCCTGGTCACAACCTTGATCTAAAGG
TTTTTTGGAGCACCAAACGATGAAATTTTGGCTAAAGTGTTGGGGGTAGA
CATTTTGTTGTTCTCGTTTAAGGAATGTTCAAGCTGTAACCAGGAGTTTA
GACTGGTTTTGGTCGATTTTAGGCAACATTTGCAAGCTCATTGACAGCGC
TGTCGTGCTGATCCCAAATTTCGCCAACTTTTTTTGGGTAGTACACCGAC
CAAGGTGTACACCCTTCGAGTTTCAGCCCATTTGGTTGTTCTACCAGGTC
ACAACCTTATCGCAAAGTTTGTCGCCGGAGAACTAAAAACGAGCTCCAGA
CGCACAGAAAAACGGCTTGCTTCCAGTTGCGATGTCGCAGCATATCTGCA
GTTTGGAGCAAAACCATAGCATAAAAGCTATTGGAGAAGGTAGAACACGA
CCCTCTTGAGACCTCCTGTCAGTATCGTAGCAAGCCGGGGTCTGTGTGAG
GAGTACTGCCGGCGACAAAGGTCATGACCCTGAATGGTGTTCGCAGCACA
AATTCACAAATCTGAGAGGGGCTCAGGGTTTCGTCAAGTGGTACCCGCCC
AAAGCTTTTGTCGGTATTACAGAAAAAAAAACACCCAAAGCAGCACATGT
GTTAAAAACCATTCCGATCTCTCCTCAGTACCTTCTCATGTCCGTACTCC
ACCGATCAGGTACGATTTCCGTGGTCACGGGCTGCTTCCCCCAGAAGAGG
TATACAGTGTAGTACTCGGGAGATCTCAGTCCACCAAATAAAGGCACGAC
AAGGAGACTCCGGCAAAAACAAAAACGGACCCCGAGAAATCACACAACGC
TGTACAAAAATAGAACAAGAAACAAGAAAAGGGAGCCTGGTACAGAGCCA
ATCACAAAACGATATAAAAAGTCAACAATAAACTAAAAAGTCATGAAGGA
GTGGCAAAAAAGACAAAAAGACACCGACTTCAGTTGCCAAGGTGTCGATA
AAAATGGACATCGGGCGTGCTACTCTCTTCACCGGCCCAGCAACAATTTC
AGGCAGCGCAAGTACGCAGGCGTGAAGGGGGCAAAAAGGCAGAAGGGCAG
AAAAACTTCGAAGGACGTGGTATCTCAGTCCACGGTACTCAACAGGGGGG
AGTGCACTGATGCAGTGGGGAAACGGATGGGAAGGGTTAGTGCTATCACA
GCAGTGTCAATCAATCTGGTGCAAATGCCGTGCTACTCTTTCCATAAAGT
CCCTCTCGCTCTCCTCTGCGGCCGTCGTCTCATCCTCTCGGGTCTTTCTA
CGCTTGCTTCCTCGAGCTTCCCCCTCCCCCTTCTCCTCCTCCTCCTCCTC
CTCGGTTTTCTCCTTGCTTGTTGTGCTGAGTTCTCTCTCCGTTCGCTTTC
CTGCACGTTTCCTGCTTGCCTCCTTCTCCTCCTTGTGCCAAGCGGTCATA
AACCGCGCAGCCCCCTTCACCACCCCCGCGTACCACGGCACCCCATTCTT
CTCCTTCGCGGCCGTGGTCCACAGGGCAGTGTCGATTCCGGACGTGAGGC
GCCTGTCGACCGTCGACCATCTGTGGCTCCGAAAGCTTTGAAATCGTCCT
CAAGCCAATTTTAGCCAGTTTTACGCCGGCCGGCCTCTGCCTGGGTCCTC
ACCCCCCACGAGTTTCCCAAACATCAGTTGCTTCGGGAGCCGCCCATCGG
GCGTCTACTTTCGATTTTCTGCGATCTGCGATCTGCGATCACATCGTTTT
TCTTTTCTACAACGGCAGTTTGTTCAGGGGTTATATTTTCGGCTGTTTTG
TGTACTGCTGTATCGATATTATGACGAGAATAAATTGAGAATACTGTATG
GATATTTATCTTTGTCTACACAAACGCCGAAAAGGCCTCGAAACATAGAC
AAGGAACATATCGGTAGAAGACGAGAGTAATCCCCGCAGACAGGTGAAAC
GTATCCTGGAGCATTCTCTCAAGTCGATAATCGGCCCTTAGACGCCCGTA
GATGTTTCTCAATAATGAAATAAAAAACAGAACGGATGCCGCACTGCCCT
GGCAAACATGAGAGAAAATCACATCACATCGGGGTATTCATCATGGGTTC
TCGAGTGATGCGCTGCATTTCATCTTAAAATTGTCCGCCCTACTTTTTTT
ACCTGGTGTCGTACTGCTGTATGATCTCACTCTCATTTATTGTATCGAAG
GGCGATCTGATCCCACCCACCGACCGCCGGCACTTGTTACTTTTTTCTTT
TTGGTAAAATGTTTTCCTTCCCTTCTCAATATCTGTCCTCCATTTTTTCG
TTCCCATACCCGCCGCCGTTGTGTCGAGGTTGTCGACACACTCACCCCTA
CGCCCTTTTACATCTCTGTCCCCCCCCCCCCTTTCGACATCTCTGTGCGT
GTGAAGCAACTCAATACAGGACGACAAATCAACCAGTCAAGGCAGAGAAG
TCACTGGATTTTCGGATCGCGGCTGGATTGCGAGGGCAAAGGAGACGGAC
AAACACCTCAATTAGTTAGCAAATTTGGCGAAGCAACATGGTTGAATTTT
CTCCTATGCCGGTGATCTTCGTGGCCAGTGTGGTGAGTAGTATCGTACGT
CGACAGCAGCAGCGTATGTGAAGATGAGTGGGGGGGGGGGGGGGGGCAGC
TGGGTGGGTGTCAGCATTAAGTAGACTAGTGAGAAAACGATATCGGTAGG
AGGAGGGGGGGGGGATCTTGCTGTATTTCCAGACACGGCGCGTGCGTCGT
ACAGGGGTTGGGAGCGTGTGTCCGAATACGGTACTGCTGCTGTTTCTTGA
TGCACAGCAGCATCCACCGCTCTAGCTGTATAATTCCATTCATACAATAC
ATGCGTCCACGCCTCTCGCGGTTTCTGGTTTCCTTTACATAGCTGTAGAT
ACAAGTGAAGGCAGGCGGCCGTAAAGGCAGGCGTCTTTCCGGCAATCCCC
CCCCCTTCGCTGGCGCCGATTTTTGTTTTCCATTAAAGCCGCCCACCCGC
CCACCATCGTCAAAAAGAGCACCTGGTAGGATTTATTGCTGTACAAGTGT
TTCGAAGCACTTCGTATCTGATAATCCCTCTAGGTAAAGTTGGTTACCCG
ATAGTTTTTTGTGTGATAATCTTCTTTCAAACCGCTGTTTCGTGGCCCGT
CCAAATCCTAATCCTTCGAATACTGGAGGTTGTATCTTAGTTCTAGGACG
CCACCTCTGTGGCGATGCCTGCTCTACTTTTGTGCCTCTTCTTCCTCCAC
TGCTGTGCTTCGTCACAACATACCGGCGGTCGTTCAGGGTCACAAACGAG
GGTTTTCCGTGGGTCGCGTGAAAGCAACCGCAACCCCCCTCGACTTTCCT
TTGTTTTCCTCTTGCTTGTTTTTTTTGCGTTTGGCGCCTCTCATACGCTC
TCTCGGTTCCCATAAAAGGTACCATATATACATGGGTGAGGTTTTATCAC
GGCACTTCGTAATGGAGAGGTTTGTGATTCAAGAGGTTATGAGCCAACAT
CAAACTTTTAAGTGTTCGGAAAAGTCATGACTACATAGACGGTTGTCGGC
GCCCCCGAATTTTTCGGTTCCGACACTCTCTTTTATGCTGTGGATTCGGT
AGTCTGTCTTCAAACATACATCGGGCCGGGGGATCCGTGTTGTGTCTTGT
GCCAAGTACGGCCTACTACGGTATACTCCCTCATACCCCGCCACTCCTAT
TTCCTTCTGCAGCGCGTGCCTTCGAGTCTATACCTTGTCGTGAGACGTTT
GCAGCAGTCCTCGTTGCCTTAATGGTTGACTTTTTTCAGTGCCGCCGAGG
GTTCGTATGATGCGTCGCACGGCGTCAGTATGTCACCCGTCTAATTCTTC
TGCTGTCCATCTGTTCGCGAGTGCGTTGTTTCTGGGCAGGGGCTACATAA
ACCATGGCTGCCTGCTCGCACGTGCGTCGCTGACTCGCCGTGAATGCTTG
CAGCAGACAGTCGTGTGCCATCTCGGCGTTCAACTCCCCTCTTAGGGAAA
GGCTTTACGGGACGCACGGCAGTTCTCTGCCCTAGTGCTAAACCTCACCT
TTTCACCCGCACGTTATCGTAACCCCGTCCGTTCAGACCGCCGGCAGCGT
CAATAAAAACACTACTGCCGACCAGCGTCATACCGAGTGGGCCTCCGACT
TGCTTTAAGTTTTTGAAGGGTTGAAGTGAGCAGAATTCAGAAATTTCCGT
CAATGCAGGGAAAAACAGATTGTTGAGAGGCATGGATTCTGAAAAACAGC
GAAGGGCCCTGATAATCACACACCGAGTACCTCACACCAGTAGGAAGGCG
TCGGGAAAGAGGAAAACCTGTTGGGTAATCGCACACAGCGGCGGCGGGGG
CTTGTCTTTGCACGCGTATCACACATCTACCTCCAATCCCCCTCATAAAT
TCAAGATATTTTTCTGCCGACCTGATATCAAGTCATGAGAGCGTTTTTTG
AAAAGGCTGAAATAAAGGCTGTTGTGCAAACTCGATAACACTTGTATCTA
TTAGGGAAGGTACCGTGGAGCAGCTGCTGCTGTGTGTGTTGTGTTGGCAC
GCTCAGACATGCTGTTGGGGCTGAGGTGTCGAAGGCTGCAGCAGTGGCTT
CAAAAAGTCCGCGAACTTGACCAAACTGGACCGACACAAGGTTTGTCGCT
GCTGTGCTCTCCGCCACGGACCCCCAACCACCTGAACTGCAGGTCATCTG
GGTAGCTAGTGGCACCTGTTGTAGACCCGCAGTTCAGGAGGTTGGGGCCT
GTGGTGGCGAGTACAGCAGCGGCAAACCTTCTGTGTCGGTCCAGTTCGGC
CGCAGTTCGCTGATTTTTTTAAGCCACTGCTGCAGCCTTCGATATCTCAG
CCTCAGCAGCATATCTTAACGTGCCGCCACACACACACACAGCTGCTCCA
GGTTTTCTTTACTGATGTGAATTAAGTGTAGTGTAATCGAGTTCGCACAA
CAGACCAAGTGAAACGTTGAGCCAAATAAGCTGTTTTGACTTGATTGTAG
ACTGAATCCTAACCGTTGAATCCAAAATGAGATTTTTCACTTTTAGGGTT
TTTTACCGCCCTTGTGTGAGTAGATCCTTCACCTTTCCCTCACACGTCAC
CGACCACTATTCACCAACCCCGTCAAACCCTTACCTAACCGTGTCGGGAT
CCGCTGCGTTCGGGCGGAAGTACTTTGTGAATCCTTTCCTTTGCACCCGT
TCGCACAACAGGTATCCTGTAGGTATCTTCGAATTTCGACTCTAATAGTC
AAGGGTAAAGGTTCAGGTCGGCGTTCAACCCTCTGCGTGAAAGCCTCAAG
CTTAAACCTGACCCTTACCAGCCCTGACCACAACACTAACCCCAACATTT
CTCTGAAAACAGCGCCGTGGAGCAGGCTGTGTGTACACCATCTCGGCGCC
CCGACACACTTTTTCCCAGAGTTATCTCTAGCGTCCACCATCTCGGCGTC
CGACACACTTTTTTTTTCTAGGGTTATCTCTAGCGTATATGCAATCCTTG
TTTTTTTGCCTTCGTACCTGACGTGCCTCTGCTGCTCCACTCGCGGTCGA
GCAGCTGTACACCATCTCGGCGTTCGACGCTGAAAGTGCCGGCGACGGCA
CCAAGGCGTGGGCCATTTTGTGCGGCTTCGTGTCTTCCGTCGTGGGCGGC
GTGCTGGCATTCTTACAGGTGAAAAAAACGAACGGAACGGGACTTTTTGT
TCCGTAGGATTTCCTACACACTGCTCCTATGATTCGTGCGTACAGCAGTG
ATCGTAAGGATTCTATTGACATTTTTTAGGGTCGGGGTTAAGGGGTTGTA
ACAGGGTGGCGGTAACCACGTTCATTGTGTTTCCGGGTGGTCTTGAGGGA
ATTTCCCATCTTATAATTTCGGCAGTTTTTTGCGGTAGGGTTGGGGTTAT
AGGGTAACGGTATCCACTTTCATCGTGTTTCCCGTTGGTCTTGGGGAAAT
CTCGCCTCACTTCGCTCGGGGTAAAGATTTGCGGGGACCCCGGTAATTTG
GTCTAAAAATGATTTCTTGCTGTGGCTGGATTCGCGGCTTTCAATTTTCA
TTTTGGGAGTTTTGAGGCACCAGAGCGTTGAGAGATGTGGACCATTGGGC
ACCCCGAGCGCCATCAACAGATTTTCTGCTGTATGTCTACGACAATCGGT
TGAGATGCAGAGGCTGAGCATCGCGCCTCCGAAATCAATGGACAGCAGTG
TTTGCTCTGTGACAAGAGGTCGCCGTACAAAAGGGGTGGTTGTTGGTCCG
TGCGCATAATGCATTTTCTCCCTCCGGCTTCCCCTGCTAGGTTGCGTTAC
GCTGTCATACTTTGTGTGGGTACAAGGAAGGGGTGAGGAAATCGGAGAAC
CCACCGCTTGGTCCGCCGGCCGTTCTGGGTAGCCTTTTTTATCTTGAGCG
CACGGCGACTGCTCGACCTGAGGAGGTAGTGTTTGTTTTTTCGCGACCAC
CCAAGCCGCGTGAAAAAGCCATAACTTGCGGAGATACGCTGTAGTTGCGG
AGGGGGGGGGGGGGCTGCAATCGTCCGCATAATATGCGGACGGTGCCCCC
CCTCCCCCCCCAAGATGATTTCGTGCTGCCCCTTTCCTTCGGAAGCACTC
ATCTTGAGAAAAGGCTGGAGTGTTGAATGCGTGTCTTTCGAAATCCCCGT
TTTATAGTGTCGTTTTATTTGCTCCCCCTGCCCCCCGCCTTGTCGCGCCC
TTACAAGTATCTCGTTTTGTGTTGTTGAGCACCGCTGGTTGATGGTTGTT
GGGCGCTTCTTTTCTCATCGTTCGCTCTCTCCCTTCACGTCCGTTTCACA
TACGTGTTGTGCCCTTTCGCTCCTCCTTTCTCTCGTTTCCTTTTCAAATT
TTCTCGTGGGTGACCTGCGCCTTGCTTATCTCTGCCGCCTTGTATGATTC
CTCGCGTACACGCATCTTTTTCTTTTTTTTCAGGCACGGGGCAAGGGGGA
CATCGTTCACAAGTTCCAGAAGTTCATCGCTCTCTTCTTCTTTATCTGGT
GGACTCTCGGGGCCGGTGCGTTGTAACTCTCTCGACCCCTTCCCCCCCCT
TTGAAACGTGCAATCGGCGCCGACGGACTGACAGACTGACTGACTTGACT
TGTTTGTGGCACGGCTCAGCAGTTGAGATGCTCGGGAGCATGACGAGCGG
TTTGAGTTGAGTCGAGAGTCGCACGCAGCCCTGGTGTCGGTTGTTTACTC
TTGTGGTCCTGGTTCTGGTTGGGCGCGCGGAGGCGTTCGTTTGTTTGCAT
AACAGAGCCCGCTTTCGCTTCTCCCCACCCTCCCTTGCTGAGAGGCTGGT
GGTGTGAGGGCGGGCCGGGGGTTCCCAGAGTGTCCCTCGCTGGGAACAGG
AGGCACCGAGTGATGACAGAGTTCGGATAATCGTTTCTCTATCATGGAAT
ACACAGCCACTTTTTTTTTTATTTAAAACAATTGTGGGAGTATTTTTTAA
GACAGCCACTCTGTGCTGGTGTGAGCCATCTATCTCCCCCCGACCCCTTT
TTATCCTCGGAGTCTTTTTCGTAATTGGTTTTGCTGTCGAGAATCCCAAC
CAGCGGCACTTCACTCATGGCACGCGTTGGTTGGGAAGGAAGCGAGGTGC
TCGGGTGTCACTTTTCACGACGGAAATTGTGAAGAAAAAACGAAAAAACG
TTGCTTGTGAAAAAAAAACGTGACGTGCAGCGGCTGTGGCTGTGGCTCGC
TCTCGCGTCCACCCTGGTGTCAGTGGGTTGGTCTCGCTGTTCGCTTGTAG
GACCCGCCTGTGTATGTCATCCGGGCACCACCCATATGGAACTCGTTCGT
CTCCCAAAACGAAAGCCATGTGACGATGTTCTTCCTGCATCATAGAAGTA
ACATTTTTCGGCTGTTCTGCATCATATCTATGTGCATGTATACGGAAATA
ATAAGAAACTGCTGCCCGTGTTGACCTTCGTCCTGTCTTGTGTGACTTAC
CCTGGCTAGCGCGCCCAACTTAAACGTATACCGAAAGGGGCAGCTGGCGA
TCATAACAATATAATAATCGAATGACGACACGCACACACACGATGTCTCT
GGGTGAATTGTATTCTTCGTCCATGATGGTATGATTTTGTTGATGTGACA
GGCATCGGCACGTTCAAGGGGCCCTTCACCATCTCCGGAAACGGTTACTT
CGCGGGCTGGATCGCGTTCGCCGCCTCCCTCAAGTACGCCTACGGCACCA
ACGACGCCGTCCGGGGCTTCGCCGACCGCGCCGCTGGCGCCATGAAGGTC
GGCCCGAATCACGACTCCTGTGGTGTTTGTTTTTTCGCAGTTATTTTTAT
TTTTTTTGGACGTAGTGGCAGTACAGACAAGTGTAGGGTTCTCGGTGTTA
CTTCTGTGTTTCCGTCTTGCCGATCGTCGTCGTCATCAGACGTCGAGGCA
GTCGTGGCGGTTCGAGTTTGATGGGTGTTGTTAGCTGTGCCGTTTTCGTT
GGGAGTCGTTATGGTGGTAATGGTGGTAGTAGTGGCGGCCGTCATTTCTT
GGTGGTGTGTTCGTTGCGTTGTCGCTCGTGGGTCTCCCTCTAATCTCCTC
CCCCTTCATCGCCGAAAGTATCCTGAGCTGGCGAAGTGAACTTTTGCCGT
GCGCTGATTTTTTTTTCAAATCGCTTATTTTGTTCTCTCTGCCATCCTTT
TGTCCCTCTCTCTTCTTCGCTCCATCCACCCCTTCTCTCTCGTGTTGGTC
CTTTAGGAGTCGACGGCGGCCGAAAAAATTCGTTTCTTCCGCTCATTTTG
GTGCTCCGCCTTCATTTTTTTGTCCCTCTCGTTTTCCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig829:70814..82451+

>mRNA_P-littoralis_Contig829.21.2 ID=mRNA_P-littoralis_Contig829.21.2|Name=mRNA_P-littoralis_Contig829.21.2|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig829:70814..82451+ (Pylaiella littoralis U1_48)
ATGGTTGAATTTTCTCCTATGCCGGTGATCTTCGTGGCCAGTGTGCTGTA
CACCATCTCGGCGTTCGACGCTGAAAGTGCCGGCGACGGCACCAAGGCGT
GGGCCATTTTGTGCGGCTTCGTGTCTTCCGTCGTGGGCGGCGTGCTGGCA
TTCTTACAGGCACGGGGCAAGGGGGACATCGTTCACAAGTTCCAGAAGTT
CATCGCTCTCTTCTTCTTTATCTGGTGGACTCTCGGGGCCGGCATCGGCA
CGTTCAAGGGGCCCTTCACCATCTCCGGAAACGGTTACTTCGCGGGCTGG
ATCGCGTTCGCCGCCTCCCTCAAGTACGCCTACGGCACCAACGACGCCGT
CCGGGGCTTCGCCGACCGCGCCGCTGGCGCCATGAAGGTCGGCCCGAATC
ACGACTCCTGTGGTGTTTGTTTTTTCGCAGTTATTTTTATTTTTTTTGGA
CGTAGTGGCAGTACAGACAAGTGTAGGGTTCTCGGTGTTACTTCTGTGTT
TCCGTCTTGCCGATCGTCGTCGTCATCAGACGTCGAGGCAGTCGTGGCGG
TTCGAGTTTGA
back to top