mRNA_P-littoralis_Contig829.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig829.14.1
Unique NamemRNA_P-littoralis_Contig829.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig829.14.1 vs. uniprot
Match: A0A6H5J7D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D3_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.470e-41
Identity = 110/246 (44.72%), Postives = 130/246 (52.85%), Query Frame = 1 
Query:  205 IPVVLESRWGLQPVIVVSGNSGDEGGSPLPLEETGSKSKPDTKPTAPIKALATTAAGSSPFSISCECGDDGREGGADDDKDEDDIDDEPTGRTLWDCAQVLWDLVADPNPANMFSVKGKRVVELGGGTGALSVGLARAGAYSITCTDLPCHLARIESTIRTNARASGGNSSXXXXXXXXXXXXXXXXXXXXXXXXXSDVAGADASHGMLPAASPAEPVVVVYQQQDTSIRVAALRWGEEEDLARVR 942
            +PVVL SRWG++PV V +  + D    PLPL               P +  ATTAAG         C D     G  +D DE+D+  E TGRTLWDC QVLWDLVADP   NMF+V+ KRV+ELGGGTGALSVGLAR+GA S+TCTDLPCHL RI ST+  NAR S                                VAG       LPAA+     V     ++  + V ALRWGE ED+A  R
Sbjct:    1 MPVVLSSRWGIEPVAVGTACTDD---GPLPL---------------PFETSATTAAGEVGTRQDYCCDD----RGIGEDGDEEDM--ELTGRTLWDCTQVLWDLVADPRKDNMFTVRDKRVIELGGGTGALSVGLARSGAASVTCTDLPCHLVRIRSTVLANARTSTS-----------CRRGVPASDVDVGGDCGGVVAGTVNRGSDLPAATG----VPTAATREARVCVVALRWGEAEDIANAR 207
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BLAST of mRNA_P-littoralis_Contig829.14.1 vs. uniprot
Match: D8LGR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGR1_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 9.830e-41
Identity = 119/246 (48.37%), Postives = 142/246 (57.72%), Query Frame = 1 
Query:  205 IPVVLESRWGLQPVIVVSGNSGDEGGSPLPLEETGSKSKPDTKPTAPIKALATTAAGSSPFSISCECGDDGREGGADDDKDEDDIDDEPTGRTLWDCAQVLWDLVADPNPANMFSVKGKRVVELGGGTGALSVGLARAGAYSITCTDLPCHLARIESTIRTNARASGGNSSXXXXXXXXXXXXXXXXXXXXXXXXXSDVAGADASHGMLPAASPAEPVVVVYQQQDTSIRVAALRWGEEEDLARVR 942
            +PVVL SRWG++PV V +  + D    PLPL               P +   TTAAG +       C DD   G   +D DE+D+  E TGRTLWDC QVLWDLVADP   N F+V+ KRV+ELGGGTGALSVGLAR+ A S+TCTDLPCHLA I+ST+  NAR +   S              XXXXXXXXXXXX        S G  P A+   P       ++  +RV ALRWGEEED+A  R
Sbjct:    1 MPVVLSSRWGIEPVTVGTACTDD---GPLPL---------------PFETSTTTAAGEAATQQDY-CCDDRAIG---EDGDEEDM--ELTGRTLWDCTQVLWDLVADPREGNTFTVRDKRVIELGGGTGALSVGLARSEAASVTCTDLPCHLALIQSTVVANARTTA--SCRRGVLGSDVGGGGXXXXXXXXXXXXXXXXXXXTSRGSDPPAATEVPAAAA---REARVRVVALRWGEEEDIANAR 217
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BLAST of mRNA_P-littoralis_Contig829.14.1 vs. uniprot
Match: A0A7S2RJW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJW5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.060e-8
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:  472 TGRTLWDCAQVLWDLVADP---------NPANMFSVKGKRVVELGGGTGALSVGLARAG-AYSITCTDLPCHLARIESTIRTNAR 696
            TG  +W+C+ VLW+++ D          +       +GKR++ELG GTG LSV LA AG A  +  TDLPCH+ +I + +  NA+
Sbjct:  365 TGTVVWECSSVLWNMLEDSRMEVNGGAASKTLRGLTEGKRIIELGAGTGLLSVALASAGGAREVLATDLPCHMPQIRANLALNAK 449
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BLAST of mRNA_P-littoralis_Contig829.14.1 vs. uniprot
Match: R1EW32_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EW32_EMIHU)

HSP 1 Score: 58.9 bits (141), Expect = 5.660e-6
Identity = 34/74 (45.95%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:  472 TGRTLWDCAQVLWD-LVADPNPANMFSVKGKRVVELGGGTGALSVGLARAGAYSITCTDLPCHLARIESTIRTN 690
            TG T+WD A+   + L+A   P     V GKRVVELG GTG   +  A AGA  +T TDLPC L  +   +R N
Sbjct:  113 TGCTVWDAARAAAEQLLAGRRPLARL-VAGKRVVELGSGTGLAGLACAAAGASHVTLTDLPCRLPLLRRNVRAN 185
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BLAST of mRNA_P-littoralis_Contig829.14.1 vs. uniprot
Match: A0A6G0XKE4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKE4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.080e-5
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:  472 TGRTLWDCAQVLWD-LVADPNPANMFSVKGKRVVELGGGTGALSVGLARAGAYSITCTDLPCHLARIESTIRTNARA 699
            TG T+WD + VL   L +  NP++  +V+GKRV+ELG GTG + +  A  GA  +T TDL   L  +++ IR NA A
Sbjct:  152 TGLTIWDGSVVLAKYLESTSNPSH--NVQGKRVLELGAGTGLVGLAAAFCGASEVTITDLAYTLENVDANIRANAEA 226
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BLAST of mRNA_P-littoralis_Contig829.14.1 vs. uniprot
Match: A0A7J7QNL2_9CHLO (Putative methyltransferase-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QNL2_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 5.600e-5
Identity = 29/72 (40.28%), Postives = 38/72 (52.78%), Query Frame = 1 
Query:  475 GRTLWDCAQVLWDLVADPNPANMFSVKGKRVVELGGGTGALSVGLARAGAYSITCTDLPCHLARIESTIRTN 690
            G  +WD A VL + +         S+ GKRVVELG GTG + +  A  GA  +  TDLP H+  I   I+ N
Sbjct:   54 GCVVWDAALVLVNYLVKQAEIGALSLSGKRVVELGAGTGVVGLTAAALGAAEVLLTDLPHHVQHISGNIKRN 125
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BLAST of mRNA_P-littoralis_Contig829.14.1 vs. uniprot
Match: A0A7S0SHD2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SHD2_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 8.100e-5
Identity = 31/78 (39.74%), Postives = 41/78 (52.56%), Query Frame = 1 
Query:  472 TGRTLWDCAQVLWDLVADPNPANMFSVKGKRVVELGGGTGALSVGLARAGAYSITCTDLPCHLARIESTIRTNARASG 705
            T R +W  A    D + D     M  ++GKRVVE+G GTG L +  AR GA S+T TDLP  L  +   +  N  + G
Sbjct:   43 TARWVWGAATATADWLCD---RGMEWIQGKRVVEIGAGTGLLGLVAARLGASSVTLTDLPTELPLLRRNLAANVTSHG 117
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BLAST of mRNA_P-littoralis_Contig829.14.1 vs. uniprot
Match: A0A485KVL5_9STRA (Aste57867_12455 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVL5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.320e-5
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:  472 TGRTLWDCAQVLWDLVADPNP--ANMFSVKGKRVVELGGGTGALSVGLARAGAYSITCTDLPCHLARIESTIRTNARA 699
            TG T+WD + VL   +   +   A+  SV+GKRV+ELG GTG + +  A  GA  +T TDL   L  I++ I  NA A
Sbjct:  136 TGLTIWDGSVVLAQYLEHTSAVDAHQDSVRGKRVLELGAGTGLVGLAAALCGAADVTITDLGYTLPNIDANIAANAAA 213
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig829.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5J7D3_9PHAE1.470e-4144.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGR1_ECTSI9.830e-4148.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RJW5_9STRA3.060e-840.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
R1EW32_EMIHU5.660e-645.95Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A6G0XKE4_9STRA2.080e-544.16Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7J7QNL2_9CHLO5.600e-540.28Putative methyltransferase-domain-containing prote... [more]
A0A7S0SHD2_9CHLO8.100e-539.74Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A485KVL5_9STRA8.320e-542.31Aste57867_12455 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig829contigP-littoralis_Contig829:53007..54866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2903.EOD30830
PFAMsMethyltransf_16
Model size1298
Max annot lvl2759|Eukaryota
KEGG koko:K21805
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.28e-07
EggNOG OGsKOG2793@1|root,KOG2793@2759|Eukaryota
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-07_005350.1
Descriptionlysine N-methyltransferase activity
Cds size1296
COG categoryS
BRITEko00000,ko01000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791686.3014038-CDS-P-littoralis_Contig829:53006..535671680791686.3014038-CDS-P-littoralis_Contig829:53006..53567Pylaiella littoralis U1_48CDSP-littoralis_Contig829 53007..53567 +
1680791686.3132758-CDS-P-littoralis_Contig829:54131..548661680791686.3132758-CDS-P-littoralis_Contig829:54131..54866Pylaiella littoralis U1_48CDSP-littoralis_Contig829 54132..54866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig829.14.1prot_P-littoralis_Contig829.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig829 53007..54866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig829.14.1

>prot_P-littoralis_Contig829.14.1 ID=prot_P-littoralis_Contig829.14.1|Name=mRNA_P-littoralis_Contig829.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=432bp
ATPFVRPYPLSWRQVVTTAATRLWDNIACGCCCRCGKACVLVHLTVNTTA
VYRSIYDRHQHGFTTDMKIPVVLESRWGLQPVIVVSGNSGDEGGSPLPLE
ETGSKSKPDTKPTAPIKALATTAAGSSPFSISCECGDDGREGGADDDKDE
DDIDDEPTGRTLWDCAQVLWDLVADPNPANMFSVKGKRVVELGGGTGALS
VGLARAGAYSITCTDLPCHLARIESTIRTNARASGGNSSAAQSENGSGHG
GGGGGGGGGGGGGGSDVAGADASHGMLPAASPAEPVVVVYQQQDTSIRVA
ALRWGEEEDLARVRKRADSQGGSGDVVYATDNGSGRSSGVTGSTGASFRT
SLAEACGVGEATTAMATRNNHNSDSDSVSDSDSDNGRSGTSTGHADSAAE
ETETVPDGLNGARSYDARGPGGRGGGGGDGGG
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mRNA from alignment at P-littoralis_Contig829:53007..54866+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig829.14.1 ID=mRNA_P-littoralis_Contig829.14.1|Name=mRNA_P-littoralis_Contig829.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1860bp|location=Sequence derived from alignment at P-littoralis_Contig829:53007..54866+ (Pylaiella littoralis U1_48)
GCAACCCCTTTCGTGCGCCCTTACCCATTATCGTGGAGGCAGGTGGTAAC
CACAGCAGCGACACGGCTGTGGGATAATATTGCATGCGGTTGCTGCTGTC
GTTGTGGCAAAGCTTGTGTCCTTGTACATCTGACTGTCAACACAACGGCG
GTGTACAGAAGTATATATGATCGACACCAACACGGCTTCACCACAGACAT
GAAGATTCCGGTGGTGTTGGAGTCTCGCTGGGGCCTACAGCCGGTAATCG
TGGTTTCCGGTAACAGCGGCGACGAGGGTGGTTCGCCACTCCCGTTGGAG
GAGACTGGCAGCAAAAGCAAACCAGACACGAAACCAACCGCACCAATCAA
AGCACTAGCAACAACAGCAGCAGGCAGTTCGCCGTTCAGCATCTCGTGTG
AGTGCGGTGATGACGGTCGAGAGGGTGGTGCTGATGATGATAAGGATGAA
GATGACATCGACGACGAACCCACGGGAAGGACGCTCTGGGACTGCGCCCA
AGTGCTGTGGGACTTGGTCGCAGACCCGAATCCAGCTAACATGTTCTCGG
TCAAAGGGAAGGTGTGTACCGCACCCCCCCTCCTTGTTTGAGTAGTGTTT
TTCGTTGTCTACGTAGGCGTCAACGCCGTTGTCCCCGATCCGTTGCTTGG
TGCCCACGTATTGAAAACACACAAGGGATCTGCGGTGGCGTACACTGCTG
CTCCCTGCTATGAAAACCCAATTCTGTGTGTACGTGTTTTGTGATTGGAT
GCATCTAACACTTGTGTGTAGGTCAGGGGACACCTAAAACTCTGACGGTG
GCCATGTAGAACGCGCCATTACTCTGGGAGATTAGACGCCATAATTTTGC
GTGTCCCCAGACCTGAACCCAAGTGCAAGATGCATTCAATCACGAAGCAC
TTACCCAGAAATCTGGGCGTTGAACCTCGGCCCATCCTCCTCAACCTTCT
CAACGCACCTCTACCACTCCCCCACCCTGGTCCCGCCCCGTCCCTCCCAG
ATTTGTTCGTACCTTATCTGTCGCGAACGCTACGTTCCACTTTGAATCCC
CGAGCCTGGACAGCAGTGCTCTGCCTGAACAACTCTCGGTTTATTCTGGT
TTTTTTTTCTTGGCACGGAAAGCAGCGCGTGGTCGAGCTTGGGGGGGGCA
CGGGGGCCCTTTCCGTGGGCCTCGCGCGTGCAGGGGCTTACTCCATCACC
TGCACGGACCTCCCGTGCCATCTAGCGCGCATCGAGTCCACCATCCGCAC
CAACGCTCGAGCCAGTGGAGGAAATTCTAGCGCCGCCCAGAGCGAAAATG
GCAGCGGCCACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGT
GGTGGCAGCGATGTCGCGGGGGCAGATGCGAGCCATGGAATGCTTCCGGC
AGCATCACCAGCAGAACCAGTGGTAGTGGTGTACCAGCAGCAAGATACGA
GTATTCGCGTCGCCGCCCTGCGGTGGGGCGAAGAGGAAGACCTTGCAAGA
GTGCGGAAACGAGCCGACAGCCAAGGCGGTAGCGGAGATGTCGTATATGC
CACCGACAATGGCAGCGGCAGGAGCAGTGGAGTCACCGGCAGCACCGGCG
CCTCCTTCCGAACTAGCCTTGCGGAAGCCTGTGGCGTTGGCGAGGCTACT
ACGGCTATGGCAACACGAAACAATCACAACAGCGACAGCGACAGCGTCAG
CGACAGCGACAGCGACAATGGCAGAAGCGGTACCAGCACCGGCCATGCTG
ACAGCGCGGCAGAAGAAACGGAAACCGTTCCGGACGGTCTCAATGGTGCA
AGAAGTTATGATGCACGGGGGCCGGGAGGAAGAGGAGGAGGTGGTGGGGA
CGGCGGGGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig829:53007..54866+

>mRNA_P-littoralis_Contig829.14.1 ID=mRNA_P-littoralis_Contig829.14.1|Name=mRNA_P-littoralis_Contig829.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1296bp|location=Sequence derived from alignment at P-littoralis_Contig829:53007..54866+ (Pylaiella littoralis U1_48)
GCAACCCCTTTCGTGCGCCCTTACCCATTATCGTGGAGGCAGGTGGTAAC
CACAGCAGCGACACGGCTGTGGGATAATATTGCATGCGGTTGCTGCTGTC
GTTGTGGCAAAGCTTGTGTCCTTGTACATCTGACTGTCAACACAACGGCG
GTGTACAGAAGTATATATGATCGACACCAACACGGCTTCACCACAGACAT
GAAGATTCCGGTGGTGTTGGAGTCTCGCTGGGGCCTACAGCCGGTAATCG
TGGTTTCCGGTAACAGCGGCGACGAGGGTGGTTCGCCACTCCCGTTGGAG
GAGACTGGCAGCAAAAGCAAACCAGACACGAAACCAACCGCACCAATCAA
AGCACTAGCAACAACAGCAGCAGGCAGTTCGCCGTTCAGCATCTCGTGTG
AGTGCGGTGATGACGGTCGAGAGGGTGGTGCTGATGATGATAAGGATGAA
GATGACATCGACGACGAACCCACGGGAAGGACGCTCTGGGACTGCGCCCA
AGTGCTGTGGGACTTGGTCGCAGACCCGAATCCAGCTAACATGTTCTCGG
TCAAAGGGAAGCGCGTGGTCGAGCTTGGGGGGGGCACGGGGGCCCTTTCC
GTGGGCCTCGCGCGTGCAGGGGCTTACTCCATCACCTGCACGGACCTCCC
GTGCCATCTAGCGCGCATCGAGTCCACCATCCGCACCAACGCTCGAGCCA
GTGGAGGAAATTCTAGCGCCGCCCAGAGCGAAAATGGCAGCGGCCACGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGGCAGCGATGT
CGCGGGGGCAGATGCGAGCCATGGAATGCTTCCGGCAGCATCACCAGCAG
AACCAGTGGTAGTGGTGTACCAGCAGCAAGATACGAGTATTCGCGTCGCC
GCCCTGCGGTGGGGCGAAGAGGAAGACCTTGCAAGAGTGCGGAAACGAGC
CGACAGCCAAGGCGGTAGCGGAGATGTCGTATATGCCACCGACAATGGCA
GCGGCAGGAGCAGTGGAGTCACCGGCAGCACCGGCGCCTCCTTCCGAACT
AGCCTTGCGGAAGCCTGTGGCGTTGGCGAGGCTACTACGGCTATGGCAAC
ACGAAACAATCACAACAGCGACAGCGACAGCGTCAGCGACAGCGACAGCG
ACAATGGCAGAAGCGGTACCAGCACCGGCCATGCTGACAGCGCGGCAGAA
GAAACGGAAACCGTTCCGGACGGTCTCAATGGTGCAAGAAGTTATGATGC
ACGGGGGCCGGGAGGAAGAGGAGGAGGTGGTGGGGACGGCGGGGGT
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