mRNA_P-littoralis_Contig829.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig829.1.1
Unique NamemRNA_P-littoralis_Contig829.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig829.1.1 vs. uniprot
Match: D8LK07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK07_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 3.070e-23
Identity = 55/116 (47.41%), Postives = 76/116 (65.52%), Query Frame = 3 
Query:  537 LDKVPGTEDAAFACKAALKDIGKDCTT--CVQPN-KVIKAGDILLSSAPLGTRLHYACARRKRKDYLRVVFDIQNKRHAENRAKNGDASSK----KTKVEETVGYACLAPDSDNEL 863
            +DK PGTE +AFA KA  +D+GKDC +  C  P+  V + GD LL +APLG  +HY CAR  RKD +R ++  Q++R A+ + K     SK    +++VE TV +A LAPDSD+EL
Sbjct:    1 MDKAPGTEVSAFASKALSRDVGKDCISPVCTAPDGPVFQEGDFLLGTAPLGQVVHYTCARANRKDLIRAIYKEQDERRAKYQKKQQGTQSKQAEKRSRVEATVSFAALAPDSDDEL 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig829.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK07_ECTSI3.070e-2347.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig829contigP-littoralis_Contig829:204..3257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size951
Hectar predicted targeting categorymitochondrion
Exons3
Cds size822
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791686.140533-UTR-P-littoralis_Contig829:203..2471680791686.140533-UTR-P-littoralis_Contig829:203..247Pylaiella littoralis U1_48UTRP-littoralis_Contig829 204..247 +
1680791686.1896713-UTR-P-littoralis_Contig829:3172..32571680791686.1896713-UTR-P-littoralis_Contig829:3172..3257Pylaiella littoralis U1_48UTRP-littoralis_Contig829 3173..3257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791686.1528125-CDS-P-littoralis_Contig829:247..7071680791686.1528125-CDS-P-littoralis_Contig829:247..707Pylaiella littoralis U1_48CDSP-littoralis_Contig829 248..707 +
1680791686.1632562-CDS-P-littoralis_Contig829:1870..19621680791686.1632562-CDS-P-littoralis_Contig829:1870..1962Pylaiella littoralis U1_48CDSP-littoralis_Contig829 1871..1962 +
1680791686.1768322-CDS-P-littoralis_Contig829:2902..31721680791686.1768322-CDS-P-littoralis_Contig829:2902..3172Pylaiella littoralis U1_48CDSP-littoralis_Contig829 2903..3172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig829.1.1prot_P-littoralis_Contig829.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig829 248..3172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig829.1.1

>prot_P-littoralis_Contig829.1.1 ID=prot_P-littoralis_Contig829.1.1|Name=mRNA_P-littoralis_Contig829.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp
MGRTIRAAAGASVGSSVGSSVGASAGGASRNALTAAAGSPATETTPTREP
STPEQPSPVTRDSFLARWSPVKEESKVKTPFSPSVFCNRPGCCQELWHLI
LPGTKQNGVTFACCSDELCAGGGSILAYQTDCVACNGKIPERTICLSLEI
GNRKYQNQHRRNCLLDKVPGTEDAAFACKAALKDIGKDCTTCVQPNKVIK
AGDILLSSAPLGTRLHYACARRKRKDYLRVVFDIQNKRHAENRAKNGDAS
SKKTKVEETVGYACLAPDSDNEL*
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mRNA from alignment at P-littoralis_Contig829:204..3257+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig829.1.1 ID=mRNA_P-littoralis_Contig829.1.1|Name=mRNA_P-littoralis_Contig829.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3054bp|location=Sequence derived from alignment at P-littoralis_Contig829:204..3257+ (Pylaiella littoralis U1_48)
GCCCCACCCACCCTGCCGAGTAAACACCTAACGTGACAATAAGCATGGGC
CGCACAATCCGTGCTGCTGCCGGAGCATCTGTTGGTTCGTCTGTCGGTTC
GTCTGTTGGCGCATCTGCTGGTGGTGCGTCTCGCAACGCACTCACTGCTG
CTGCTGGCTCCCCCGCCACTGAGACCACCCCGACCCGTGAGCCTTCCACG
CCGGAACAGCCCTCCCCGGTCACGCGTGACTCTTTCCTCGCGCGTTGGTC
GCCGGTGAAGGAAGAGAGCAAAGTGAAGACCCCGTTCAGCCCGTCGGTGT
TTTGCAACCGACCGGGCTGCTGCCAGGAGCTTTGGCACCTCATCCTGCCC
GGGACCAAGCAGAACGGAGTGACGTTCGCCTGCTGTTCAGACGAGCTGTG
TGCGGGTGGAGGTTCAATCCTCGCGTACCAGACGGACTGCGTTGCCTGCA
ACGGCAAGATCCCGGAGCGGACCATCTGCCTCTCGCTGGAAATCGGCAAC
AGGAGTAAGTTATTTTCTTTATTATGTTGAACACAGTACTGCTGTCTGAG
TTGCGCATGGAGGTATTGCCTGACTTGTTCGCGTCCGAGCTCATGCGTGA
GAGATTCGGTTCAAGTGTGTGTTCACTCATGTATGAATGCGTGGGTAGTC
CTTTTTTATATTGCGCACACATGTCTTTTCAGTGCGTGGATACCTGCGTC
CTTTTTGTCCTTTACTGGAATAGATACATCCATTGTCTGCAGGGTATCAA
TGTCCGCATGCATCTGCAGAGTGGATGTGATCACTGCTGTAATACGTGTG
ATCGAGTAACCTGCTACGCACTTGCCAGATAACAAGCGTGTGTCTCTGAA
CATCGTGGTCGCGTATATGTGCTCATTTATTTAGAGATGCGCGCGTGGTC
ATTTTTATGTTGTAGACATATCTTTTCAGTTCGTGCATTCTGACAGCGCG
CATACTTGCCACATAAATCTAGCCAAGTTGAATAAAGTACTGCTGTCTGA
GTTGCGCATGGAGGTATTGCCTGACCTGTCCGCGTCCGAGCTCATGCGTG
AGAGATTCTGTTCAAGTGTGTGTTCATTCATGTATGAATGCGTGAATAGT
CCTTTTTTATATTGCGCACACATGTCTTTTCATGGGTGGACACGGCTGTA
TGTAGTGCATGTGACAGCCACATAAATGTAGCCAAGTTTAAGAAATTACT
GCTATCCCGAGTTGCGCAAGAAGGTATTGCCTGACCTGTTCCCGTCCAAG
CTCATGCGTGTGAGATTCTTGGTTCAAGTGTGTGCTCATTTGTGCACTGT
AGGGATGCGTGCGTCGTCCTTTTTTTCATGTTATACACATATCTTCTCAG
AGCGTGTGACAGCGCACATACTTGCCACATGTTCCAGCCCACACAAATCC
AGCCAAGTTTAACAAATTATTGCTGTCCCGAGTTAATCCAGCTAAGTTTA
ACAAATTACTGCTGCCCCGAGTTGCGCACAGGAGTATCGCCTACCCTGTT
TGCGTCGAAGCTCATGCGTGTTAGATTTTCGGTTCAGGTCAATCATCATA
TTCCTTTCTCTACACACCCATGCGCATGTTTGCCATGTGAGACGGGTCCC
TCTGTTCAGTTGTGTTGACGCCGACCCTTTCTGCTTTCCCCACGTTTACG
CTTTTTGTCGTGTACAGAGTACCAGAACCAGCACCGCCGCAACTGCTTGC
TGGACAAGGTTCCAGGCACGGAGGACGCCGCTTTCGCCTGCAAGGCTGCG
CTGAAAGACGTGAGTGCTTCGACACGTTTGCGCACGTTTGCGCATCCCGT
ACTAAAATATGTGCATGCGTATATTTTTTTTCTACATGCGTTTTATGTTG
ATTTGTGCCAATTACTTTTTTTATCATGTTTCATTTAGTGCGTATGTGTT
GTACGCTTTTTTCACCCCCGAAGTTTTTGTCTTGATTTCTACGCCAAGCA
AACTACATGTATGCATGTCCTCTGTGTTTTTTTTGTTTCCTGGATGCTGT
GTGTATGCAATACTTCCATCTCCTCGCAGCATAAACGTGTTCATTTCACG
CAGATGCCCCCGACTTGCGTATGAAGTGTTTTGACCGTTGTGTCGAGTTA
AGCCCAACTACGAACACCAGATATTTTTAATTATCTCTTGCACCACACCC
CCTGCCCTGTCGAGCATTGTTGATACCATGTATGTGTTGATAGGCCGGGG
CGTCATATCATTTCACGCAGATGCCCCCGACTTGCGTATGAAGTGTTTTG
ACCTGTGTGTCGAGTTGAGCCCAACTAGAACACCAGATTTATCTAATTGT
CTCTTGCACCACACCCCCTGCCCTGTCGAGCATATGTTGATACCATTCGT
GTGTTGACAGACCGTGGCGTCATATTAGTTAATGATGTACCACTCATTTT
TCGTACATTAACATGGGCGTGTCTTCAGTTTGTTTCCTGAATACTATACG
TATGCAATATGTCCATCTCGTTGCAGCACCAACATCTTTATTCCCTGTAC
AAACCCCCGACCCCCGACTTGGGTATAGAAATCGTTGACCGTTTTTTAGA
ACACCATTTTTTTCTACACCTCTGCCCTGTCACACATGTTTCGATACCAA
GCAGACCGTTGCGTCACATTTGTTATCGATGTACATCTGACCTTACACCT
TTACCCGAACCCCCCGCCTACTGCCCCACCCCCACACCTTAAAATGCAGA
TCGGAAAAGACTGCACGACCTGCGTGCAGCCGAACAAGGTCATCAAAGCT
GGGGACATCCTTCTGTCGAGTGCACCACTCGGCACGCGCTTGCACTACGC
CTGCGCCCGCCGCAAGCGTAAGGACTATCTCCGCGTCGTGTTCGACATCC
AGAACAAAAGGCACGCCGAGAACCGGGCGAAGAACGGCGACGCCTCTTCC
AAGAAGACCAAAGTCGAGGAGACGGTTGGCTACGCCTGCCTCGCCCCTGA
CTCCGACAACGAGCTTTAAATCGTTCGTTTTCTCGGAGATCGAGGATTTG
ATTTGTCGAACGTAAGCTTGTGCTTACGATTTGTCGACTTTCACTGATTT
GATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig829:204..3257+

>mRNA_P-littoralis_Contig829.1.1 ID=mRNA_P-littoralis_Contig829.1.1|Name=mRNA_P-littoralis_Contig829.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig829:204..3257+ (Pylaiella littoralis U1_48)
ATGGGCCGCACAATCCGTGCTGCTGCCGGAGCATCTGTTGGTTCGTCTGT
CGGTTCGTCTGTTGGCGCATCTGCTGGTGGTGCGTCTCGCAACGCACTCA
CTGCTGCTGCTGGCTCCCCCGCCACTGAGACCACCCCGACCCGTGAGCCT
TCCACGCCGGAACAGCCCTCCCCGGTCACGCGTGACTCTTTCCTCGCGCG
TTGGTCGCCGGTGAAGGAAGAGAGCAAAGTGAAGACCCCGTTCAGCCCGT
CGGTGTTTTGCAACCGACCGGGCTGCTGCCAGGAGCTTTGGCACCTCATC
CTGCCCGGGACCAAGCAGAACGGAGTGACGTTCGCCTGCTGTTCAGACGA
GCTGTGTGCGGGTGGAGGTTCAATCCTCGCGTACCAGACGGACTGCGTTG
CCTGCAACGGCAAGATCCCGGAGCGGACCATCTGCCTCTCGCTGGAAATC
GGCAACAGGAAGTACCAGAACCAGCACCGCCGCAACTGCTTGCTGGACAA
GGTTCCAGGCACGGAGGACGCCGCTTTCGCCTGCAAGGCTGCGCTGAAAG
ACATCGGAAAAGACTGCACGACCTGCGTGCAGCCGAACAAGGTCATCAAA
GCTGGGGACATCCTTCTGTCGAGTGCACCACTCGGCACGCGCTTGCACTA
CGCCTGCGCCCGCCGCAAGCGTAAGGACTATCTCCGCGTCGTGTTCGACA
TCCAGAACAAAAGGCACGCCGAGAACCGGGCGAAGAACGGCGACGCCTCT
TCCAAGAAGACCAAAGTCGAGGAGACGGTTGGCTACGCCTGCCTCGCCCC
TGACTCCGACAACGAGCTTTAA
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