mRNA_P-littoralis_Contig827.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig827.28.1
Unique NamemRNA_P-littoralis_Contig827.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig827.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig827contigP-littoralis_Contig827:104454..107249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size525
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791683.7643905-UTR-P-littoralis_Contig827:104453..1045251680791683.7643905-UTR-P-littoralis_Contig827:104453..104525Pylaiella littoralis U1_48UTRP-littoralis_Contig827 104454..104525 -
1680791683.9349976-UTR-P-littoralis_Contig827:107099..1072491680791683.9349976-UTR-P-littoralis_Contig827:107099..107249Pylaiella littoralis U1_48UTRP-littoralis_Contig827 107100..107249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791683.8533514-CDS-P-littoralis_Contig827:104525..1046161680791683.8533514-CDS-P-littoralis_Contig827:104525..104616Pylaiella littoralis U1_48CDSP-littoralis_Contig827 104526..104616 -
1680791683.9172864-CDS-P-littoralis_Contig827:106887..1070991680791683.9172864-CDS-P-littoralis_Contig827:106887..107099Pylaiella littoralis U1_48CDSP-littoralis_Contig827 106888..107099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig827.28.1prot_P-littoralis_Contig827.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig827 104526..107099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig827.28.1

>prot_P-littoralis_Contig827.28.1 ID=prot_P-littoralis_Contig827.28.1|Name=mRNA_P-littoralis_Contig827.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MAAAVTEADSSLGTAAYKAAAGPRSMLLWGLEALRGMLHEKGAKVFLPGP
PAPAVAAPGSSAPAAATYLASCDSSSTAFSASCATRTVAIRDSPCALTWT
*
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mRNA from alignment at P-littoralis_Contig827:104454..107249-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig827.28.1 ID=mRNA_P-littoralis_Contig827.28.1|Name=mRNA_P-littoralis_Contig827.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2796bp|location=Sequence derived from alignment at P-littoralis_Contig827:104454..107249- (Pylaiella littoralis U1_48)
CAAGGAGGTCCCAACGTCGTTGATTTGGCAAAGGTCATCCGTCCAGACGG
AGCGACGTTCTCGAGCCTCTCCCTGCTCGAAGTCACGGAGGCCATCGCTC
CGATCGTGGAGAGCCGCGGCAACGCATCCGGCGTGTCCCTGTTTGCAGCG
ATGGCAGCTGCAGTGACCGAGGCGGACTCCTCCCTCGGCACGGCGGCCTA
CAAGGCGGCGGCGGGGCCGCGCTCCATGCTCCTGTGGGGACTCGAAGCTT
TGCGCGGCATGCTCCACGAGAAAGGAGCGAAGGTGTTTCTGCCGGGTCCC
CCGGCGCCAGCCGTCGCCGCGCCTGGCTCTTCCGCGCCAGCAGCGGCGAC
ATATCTCGCGAGGTGAATTTTGGGTGCTTGCATTTTATCTCCATCCACCG
CTGTGCATTTGTTCGGGCTTCGGCCTTAAATCTATGGGGGTATACTAGGT
TCCATATATTCTCTGTCACCTTTCTGCTTTCCATCGTTCTCGGATGCCAG
CAATATTTTGGTTCGGAGTAATGCGGTACTGGAAAAGAGGGATCGGTTTC
TGTACTCTTTATCATAAATGCTGTTTCACCGACTGCCTGTACAGTACAGC
AGTACCGGCTACACCGCCGTGCTTATATTGATATGGTACGTTACTGCCAT
GAGCAGTTGCGTCGTACACTCCGGAACTGCTGTTACTGACATCAGGGGTG
GATTCGTACACTCAAACTGAGTAGTGAGTATGCTACTGCGATACTGCTGT
AGACCGAGCCGCCATACGGTGCGTATCGGACGACCCGCTATTGACGAATA
CCTGGTAGTGATAATGCGTGCTATTTACGACCGACCGGGTTCGATCCCCT
TAAATACCTGCGTCTACGGCGGGGTTCGATTTCATCACTTACGGAAGGAT
GCTTTATTCTATTTCATTTTATTTTCGGTTCTATCATACCTGGAATGCTG
TCATGTACGATACCGACATTAGGAATACTCCGAACCGGGTAATGAGTAGG
CTGCTGCTGTACCCAGACACCCTGACGACTGCTGTTGACACTTTATTTTA
TTTTATTTCACCTCACTGTGTACGATACTGCTGATGATACCTTATTTTCC
GTTCTACCTCCTTATTTCAGTGGCTGGTTGCGTATGCTCCGGAACCGGAA
ATGAGTAGGTAGGCTATTCTGTGCGGTAGACGATACTGACATAACAGGGA
ACCACCGTGGGGCGTGGGTTCCGTTATGGACGCATAGTTATTATACATTT
ACGTCGGAACCGGAAACCTCATATACTTTTACTGGCGGGTTCGATCCCCA
CTACGCAATCGGGTTCGATCCCCTCATATACTTTTACGGACGGGTTCGAC
CCCCACTGGTTTTCGGACGGGTTCGATCCCCACTGGTTTTCGGACGGGTT
CGATCCCCACTACGCAATCGGGTTCGATCCCCTCATATACTTTTACGGAC
GGTTCGATCCAAACTACGCAATTGGGTTCGACCCCCTCATATACTTTTAC
GGACGGGTTCGATCCCCACTGGTTTTCGGACGGGTTCGATCCCCACTACG
CAATCGGGTTCGATCCCCTCATATGCTTTTACTGGCGGGTTCGATCCCCA
CTACGCAAACGGGTTCGATCCCCTCATATACTTTTACGGACGGGTTCGAC
CCCCACTGGTTTTCGGACGGGTTCGATCCCCACTGGTTTTCGGACGGGTT
CGATCCCCACTAAGCAATCGGGTTCGATCCCTTCGTATACTTTTACGGAC
GGGTTCGATCCAAACTACGCAATTGGGTTCGACCCCCTCATATACTTTTA
CGGACGGGTTCGATCCCCACTGGTTTTCGGACGGGTTCGATCCCCACTAC
GCAATCGGGTTCGATCCCCTCATATACTTTTACGGACGGGTTCGACCCAT
ACTACGCAATCGGGTTCGATCCCCTCATATACTTTTACGGACGGGTTCGA
TCCCCACTGGTTTTCGGACGGGTTCGATCCCCACTGCGCAATGGGGTTCG
ATCCCCTCATATACTTTTACGGACGTGTTCGATCCCCACTAAACGCGTGG
GTTCGATCCCCTACTACTGTACAAACGGGTTCGATCCCCTTGCGGTACGA
TCGGGTTCGATCCCCTCATACTTCGTATACCTTTACGGACGGATTCGATC
CTCACGTATCGCGTGGGTTCGATCCCCAACTGCTGTACGAACGGGTCGAT
CCCCTTGCGGTACGATTGGGTTCGACCCCCTGTGTGGCACGGTTCGACCC
CGTGGGGCTTTTGCCGGCAAATCAAGAATGTTATCTTTGCTTTGTCTTTC
CGATCCCCGTGGGGCTCTGCAGGAAAAATCAGGAATCTTGTTTTTTTGAT
TCTATTTCACTTTCTTTCGCGGCTGTTGTACGGTCCGATCCCCTTGCGAG
TTTCTGCGTGAAGTTTCCTGAGCGCGCCATGCGACGTGGGGCTCTGCAGG
AAAAATCAGGAATCTTGTTTTATTTTATTCTATTTCACTTTCTTTCGCGG
CTGTGGTACGGTTCGATCCCCTTGCGAGTTTCTGCGTGAAGTCCCCTGAG
CGCGCCATGCGACGAACGAGTTTCATATTAACGTGGCCGACCGATTTATT
TGCTTTCATTTCCGACGGTGCGATCGATTGCAGTTGCGACTCAAGCTCGA
CGGCGTTCTCGGCGTCATGCGCGACGCGGACGGTTGCTATACGTGATTCA
CCATGCGCACTCACCTGGACGTAGCCATTCGGATGGCAACGGATTTGAAC
CTCCTCGACGCGAGGAAGGTCGCGCGGGGCAATCGTATGGTGGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig827:104454..107249-

>mRNA_P-littoralis_Contig827.28.1 ID=mRNA_P-littoralis_Contig827.28.1|Name=mRNA_P-littoralis_Contig827.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig827:104454..107249- (Pylaiella littoralis U1_48)
ATGGCAGCTGCAGTGACCGAGGCGGACTCCTCCCTCGGCACGGCGGCCTA
CAAGGCGGCGGCGGGGCCGCGCTCCATGCTCCTGTGGGGACTCGAAGCTT
TGCGCGGCATGCTCCACGAGAAAGGAGCGAAGGTGTTTCTGCCGGGTCCC
CCGGCGCCAGCCGTCGCCGCGCCTGGCTCTTCCGCGCCAGCAGCGGCGAC
ATATCTCGCGAGTTGCGACTCAAGCTCGACGGCGTTCTCGGCGTCATGCG
CGACGCGGACGGTTGCTATACGTGATTCACCATGCGCACTCACCTGGACG
TAG
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