mRNA_P-littoralis_Contig825.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig825.26.1
Unique NamemRNA_P-littoralis_Contig825.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig825.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig825contigP-littoralis_Contig825:66903..69789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size279
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791681.865485-CDS-P-littoralis_Contig825:66902..669941680791681.865485-CDS-P-littoralis_Contig825:66902..66994Pylaiella littoralis U1_48CDSP-littoralis_Contig825 66903..66994 +
1680791681.878173-CDS-P-littoralis_Contig825:69602..697891680791681.878173-CDS-P-littoralis_Contig825:69602..69789Pylaiella littoralis U1_48CDSP-littoralis_Contig825 69603..69789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig825.26.1prot_P-littoralis_Contig825.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig825 66903..69789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig825.26.1

>prot_P-littoralis_Contig825.26.1 ID=prot_P-littoralis_Contig825.26.1|Name=mRNA_P-littoralis_Contig825.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
VVACLLEHGVSSCCRSVEGTTTTMSRKRTCRVLDEMTVEFRLSQLNDILQ
RTVETMRGDDVIQGKKAMAILQNWCGENCSFEKVFGSVRGMLP
back to top

mRNA from alignment at P-littoralis_Contig825:66903..69789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig825.26.1 ID=mRNA_P-littoralis_Contig825.26.1|Name=mRNA_P-littoralis_Contig825.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2887bp|location=Sequence derived from alignment at P-littoralis_Contig825:66903..69789+ (Pylaiella littoralis U1_48)
GTTGTTGCTTGCTTGTTGGAGCATGGCGTGAGCAGCTGCTGCCGGTCCGT
GGAAGGAACAACAACAACAATGTCGCGCAAGAGGACTTGTAGGTGAGAAC
ACGTTTTGACAACTGCTGTTCCACCCCGTATATAAGTACCAGTATGGACT
ATACTAAATAATAGTACTGCTTGTACCATGTTGTATCAGTTGTATACATA
TATACACCGGTCGCCCCGGTGGACTAGTGGTCCCTCGTTAACCACTAGAT
GCAGAGGAACGGGGGTTCGATTCCCGGTGAATGTGTTCCTTTGCTACTTT
GAAAGCGGCTATGCTGTTAGTAAAATCAGATTCGGCTTCGCCGACGAGGG
TAGGGACCGCGGACCCCTGCTCGCGAGAAAAAATCTCACGCATGTACCGC
AGAAGGAAGGTGGGGGTAACTCCTCCTGTGTTGACCTTCCTCCTGTGTGA
CCCCGTCGATGGGCCTAGCCTGTAGTTTGCAGACTAGTGTGCCAGAGAAC
ATGGGATGACAACACATACGTATACTTGTGTGTATATATATAGACATATT
TACTTACATACTTGCGGGTCACGCGCTCAGCCCTCGAGAGCTGTTTTTTC
GCGAATTCTCCGCGTGTGGGCCTCGTTTCGCCGCGAGCCTTGCGCCTGCC
GGTAGCCCGTAGTTGCGAGGGCCCTGCCCGTGCGTGCCTCGCGCTCGGGA
CGGCCGTGGCGCAGCGCTAGCGAGGGTAGAAAGTCGCGTCTCCGAGATCT
ACTACGACTCCCCCAATCACAGCCCGTTTTATTACGAACGACCAGGCCAT
TCACGGCGAGGGTCTCCCCGTGCGTCGGCGCTGCGCCGCTCAGTAGCTCA
GGCCCACCCCCACAGCGCAGCAACCAAGTTTCCGCGTGACACGAGACAAA
CCACACTACTGCTGTAGTGAGTTTCCCTGTCGATTCCGGCGAAAAACGGG
GGCGTTTGCGGCCAGTGTCGCGCGCTCAGCAGTCCAAAGTTTACATCCGC
CTGAAAAACAGAGCCCCGATTTGCCGCCAATTAGTGGTGCCATAATATAT
AAATCGATATTTCGCTTCCGGCAGATACCTTGCTCCTCTGCGATGTCAAG
CGCGCTATCTGCTGATGTAAATATATACGGATTGAATTGCCCGTTGGAAG
CAAGCAAGCGTGTTTGGAGCCATGAACCCTTCGGGAACGAGTGATTGGAG
ATTCGACTGCTTTTTGTTGTTGCGGCTGCTGTCGTTGCCCTTGCTTAGCC
TACCCCAACCTATTATCATTTATGTGCGTGAACCCTGTAGCACAGGGTGT
TCCGGTGAGTCCCTCGAGTGTCTCTGCATGTATGATATGATATCATATGA
TATGTGGGTCCTGAGTGACAAAACGCCGAACACTCCTGTTTCAAGGCTGC
TGCTGTACCGTTCGTTGTCAGCACCCCCCCGAAACAACAAATACGTTTTC
AGGGCTCAGGGCCTTCGTCTGTCTCTGCGGTATTATTCGTTTGAGAACAA
GATACGGAGTACATTACATCGAGGTCCGGCCTTTCTGCTTTCCAGTCAAT
CATAAAAGTACGAACAGCAGTGCCAACCAAAAGAAAGCATAACGGCCAGG
TTTGTTTACACATTGCACCACTTGACATCGCATTCAGCCTACCGCGGAGC
GGCGGACCGCCCCAGCGGGCCCGCCGCGAAGCCCCTTGTTTATATATACG
CTGGTCCTCCGCTGCTGTCGTTGCGAGTTGCTGCTGGCTGCTGCTGCTCT
ATGCCAGGGTATATGCGATAATACTACTTGATTGAGCTGTAGAATAGTGG
TAGTATACAACAGCAGCAACGACAGCAGTTTTTTGTACCGCTGCTGAGCT
GCTGTAATCCGCGTACTGCGTACTTATTCCTATATTAGGCCTTGCGTCAC
TTGCTCCTTTGTGTCCGTGTTCTGTGCTGTAAGAAGGACAGGGTTTTTTC
CGCACGACGGCGGTGGTAATTGTTACAGGAGAATGGACTGCCTCTTGCAA
GAAATATATGGGATACAATATAGTGCCTGATGTAAACGAAAACCCGAGAT
TGTCTGAGATTGTCTGGGTCGTGTACAGATAACAGCGCGAGAAGTTCTAT
GCAAGGTCGTCACCGGCGTCCTGGAAGGCACGGCGTTGTGTGCGCATAAA
ATCTTGGTGAAAATGCGTGATATAGCATGaAAAAAAAAAAATCCTAAACG
TCCGTATTTTGTTGTTTTTACAACCCACTAATTTCAAGTCAAACGGCAGA
CCACGATTTTCTGTAAATATAATAAAGTATGACGGCAGGTACAGCTGGGT
GACATGTAGACCGATCAGAGACCCCCCACACAGCCGGTCAGCGAGAGTTG
TTGTGCCTGTCACAAGATCAGTGCTTAACCATGCAGTGCTTGGATATGCC
GAGGCCGTGTACCCTCTCTGTCAATGAGACGATCGTACGAAGTACGAAGT
GCCGGGGTATGGCACAGCAGCACTCATGTATGACATAATGTACTTCGTAT
GTTTTTTGTGCATTGCTGGCACTCTACACTTTGATACATAGGAGAGTAAC
GTAAAATCCAGGTGTCATGATACTGGTCCGAGGTCAACCGAAGTCTGCTT
GCCCTCTCCGTCTCTGTCTCACTGTCAATAACATTCAGGCTCATAGCTCA
TAATGATCAGGAAATGTGCCCTCGCGTGTGATTTGTACTCCTTCTTGTAG
GGTTTTGGATGAAATGACCGTAGAATTCAGGCTGAGCCAGCTCAATGACA
TACTGCAACGTACGGTGGAAACGATGAGAGGGGATGATGTCATACAGGGA
AAGAAGGCGATGGCGATACTGCAGAATTGGTGCGGCGAGAACTGTTCGTT
TGAGAAGGTCTTCGGCTCTGTCCGTGGGATGCTACCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig825:66903..69789+

>mRNA_P-littoralis_Contig825.26.1 ID=mRNA_P-littoralis_Contig825.26.1|Name=mRNA_P-littoralis_Contig825.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig825:66903..69789+ (Pylaiella littoralis U1_48)
GTTGTTGCTTGCTTGTTGGAGCATGGCGTGAGCAGCTGCTGCCGGTCCGT
GGAAGGAACAACAACAACAATGTCGCGCAAGAGGACTTGTAGGGTTTTGG
ATGAAATGACCGTAGAATTCAGGCTGAGCCAGCTCAATGACATACTGCAA
CGTACGGTGGAAACGATGAGAGGGGATGATGTCATACAGGGAAAGAAGGC
GATGGCGATACTGCAGAATTGGTGCGGCGAGAACTGTTCGTTTGAGAAGG
TCTTCGGCTCTGTCCGTGGGATGCTACCG
back to top