mRNA_P-littoralis_Contig82.76.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig82.76.1
Unique NamemRNA_P-littoralis_Contig82.76.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig82.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig82contigP-littoralis_Contig82:375939..376872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size217
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791672.4490938-CDS-P-littoralis_Contig82:375939..3760041680791672.4490938-CDS-P-littoralis_Contig82:375939..376004Pylaiella littoralis U1_48CDSP-littoralis_Contig82 375940..376004 -
1680791672.4611807-CDS-P-littoralis_Contig82:376721..3768721680791672.4611807-CDS-P-littoralis_Contig82:376721..376872Pylaiella littoralis U1_48CDSP-littoralis_Contig82 376722..376872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig82.76.1prot_P-littoralis_Contig82.76.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig82 375940..376872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig82.76.1

>prot_P-littoralis_Contig82.76.1 ID=prot_P-littoralis_Contig82.76.1|Name=mRNA_P-littoralis_Contig82.76.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
TQFPSRKDAELAAFRWRTSWEEGRKGDLADEPQHDSHTEETSASSLVLPQ
GKSLHSLGKLCAIQERAYKKQR
back to top

mRNA from alignment at P-littoralis_Contig82:375939..376872-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig82.76.1 ID=mRNA_P-littoralis_Contig82.76.1|Name=mRNA_P-littoralis_Contig82.76.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=934bp|location=Sequence derived from alignment at P-littoralis_Contig82:375939..376872- (Pylaiella littoralis U1_48)
ACACAGTTTCCTTCAAGGAAGGACGCGGAGCTGGCAGCCTTTCGGTGGCG
CACGAGTTGGGAAGAGGGTCGGAAGGGCGACCTGGCAGACGAACCACAGC
ATGACTCACACACTGAGGAGACATCAGCGTCGTCTCTAGTTTTACCTCAA
GGCAAGTGTACGTCCGCACCAGTACGTAGTCGACCGACCTGTACAATTGC
TTGAATTTGAAAATGTAATCGTACAGCAGTCTCACACGGGCAGGAATCCT
ATCCAGCAGCATGACAAGGGCACCTCGTTGCATGCCGGCCCCCCCACTAC
TGCTGTACGAACGCATCTCTGCTATACGTACATAGCTGCTGCTGCTGCAA
TGTGTTTCGCCTGCGCAGTGAGATAGTGTACGAGCTGCTTACGCACGCGT
ACATACTGAGAGTACCTGCTGGTCGAACCCGTATGGATTTTAGAGTGTAA
TCGTACAGCAGTCTCACACGGGCAGGAATCCTATCCAGCGGCATGACAAG
TGCACCTCGTTGCATGCCAGGCCCCCCACTACTGCTGTACGAACGCATCT
CTGCTGTAGCTGCTGCTGCTGCAATGTGTTTCGCCTGCGCAGTGAGATAG
TGTACGAGCTGCTTACGCACGCTTACATACTGAGAGTACCTGCCGGTTGA
ATCCGTTTGGATCTGAGAGTGTAATCGTACAGCAGTCTCACACGGGCAGG
AATCCTATCCAGCAGCATGACAAGTGTCCCTCGTAGATGTAAAGTCATCA
CTGCTGTGCAAATGTATCTCAGCTGTGGCGATGTCTGAGAATCAGCGAAT
GCTTGAGCAAAAGCACCCTTTTGCTGATTTCCTCCTTACTTTCACAACAA
CCGCAACATGACCAACAGGTAAATCTTTGCACAGCTTGGGCAAGCTGTGC
GCTATCCAGGAGAGAGCGTACAAGAAGCAGCGCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig82:375939..376872-

>mRNA_P-littoralis_Contig82.76.1 ID=mRNA_P-littoralis_Contig82.76.1|Name=mRNA_P-littoralis_Contig82.76.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig82:375939..376872- (Pylaiella littoralis U1_48)
ACACAGTTTCCTTCAAGGAAGGACGCGGAGCTGGCAGCCTTTCGGTGGCG
CACGAGTTGGGAAGAGGGTCGGAAGGGCGACCTGGCAGACGAACCACAGC
ATGACTCACACACTGAGGAGACATCAGCGTCGTCTCTAGTTTTACCTCAA
GGTAAATCTTTGCACAGCTTGGGCAAGCTGTGCGCTATCCAGGAGAGAGC
GTACAAGAAGCAGCGC
back to top