mRNA_P-littoralis_Contig82.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig82.29.1
Unique NamemRNA_P-littoralis_Contig82.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig82.29.1 vs. uniprot
Match: A0A6H5JXA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA5_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 5.530e-39
Identity = 118/256 (46.09%), Postives = 138/256 (53.91%), Query Frame = 1 
Query:   88 EADFEEAEGALPGVPPGGGLLASFVGQEARFALKCATDKGAWQFNQQRRHALAHLAFVSYATDRILRG--HHNHHRNQSQACARRHEDGNTS-----SGAKFGGNTKISPCPEAAAKDVLGGGEDFIESTVGGTRCLTYCEVTGARKLIFPLALTAVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEAGDGGGRATSASDIGVEK-AALQAFRALNAFVGGLAAADAVE-AVGDKKSTRCGVAPYAINV 828
            EADFEEAEGALPG P GGGLLA+F+GQEARFALKCATDKGAWQF++QRRHALA+LAF+SYA DRI+ G  HH                GN         A FGG+ +            + G     E T GG  CLTYCEVTGA KL FPLAL     +                                A  G GGG   S+  +  E+ AA++AFRALN FV GLA ADA + AVG  +    G+APY + V
Sbjct:  434 EADFEEAEGALPGAPSGGGLLATFLGQEARFALKCATDKGAWQFDRQRRHALAYLAFLSYAIDRIVAGSRHHXXXXXXXXXXXXXXXXGNNIIQQPVGAAGFGGSRRG-----------VAGHVGEAEVTAGG--CLTYCEVTGAPKLTFPLALLPSPEASVDERGREGDDTRSNVGGDV------------AGRGSGGGACPSSGVVAAEESAAVRAFRALNMFVSGLAKADANDNAVGKNRCGGGGIAPYTMEV 664
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BLAST of mRNA_P-littoralis_Contig82.29.1 vs. uniprot
Match: D7G9E1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E1_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 3.640e-31
Identity = 122/251 (48.61%), Postives = 140/251 (55.78%), Query Frame = 1 
Query:   88 EADFEEAEGALPGVPPGGGLLASFVGQEARFALKCATDKGAWQFNQQRRHALAHLAFVSYATDRILRGHHNHHRNQSQACARRHEDGNTSSGA--KFGGNTKISPCPEAAAKDVLGG-GEDFIESTVGGTRCLTYCEVTGARKLIFPLALTAVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEAGDGGGRATSASDIGVEKAALQAFRALNAFVGGLAAADAVE-AVGDKKSTRCGVAPYAINV 828
            E DFEEAEGALPG P GGG LA+F+GQEARFALKCATDKGAWQF++QRRHALA+LAF+S+ATDRI+ G H                         +  G T  +     + KDV G  GE   EST GG  CLTYCEVTGA KL FPLAL     +                  XXXXXXXXXXXXX                     AA++A RALN FV  LA ADA + AVG  +    G+APY I+V
Sbjct:  446 ETDFEEAEGALPGAPSGGGPLATFLGQEARFALKCATDKGAWQFDRQRRHALAYLAFLSHATDRIVLGSHXXXXXXXXXXXXXXXXXXXXXXXTQRPAGATGFA----GSCKDVAGHVGE--AESTAGGG-CLTYCEVTGAPKLKFPLALLPSPEASAHAGGPAGHDSRGSVGGXXXXXXXXXXXXXXXXX----------XXXXXXSAAVRALRALNLFVAALAKADADDHAVGKNRCGGGGIAPYTIHV 679
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig82.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXA5_9PHAE5.530e-3946.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9E1_ECTSI3.640e-3148.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig82contigP-littoralis_Contig82:150391..154296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G9E1
Preferred namePTAR1
PFAMsPPTA
Model size2945
Max annot lvl2759|Eukaryota
KEGG koko:K14137
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005968,GO:0006464,GO:0006807,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009987,GO:0018342,GO:0018344,GO:0019538,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0071704,GO:0097354,GO:1901564,GO:1902494,GO:1990234
Exons3
Evalue1.38e-35
EggNOG OGsCOG5536@1|root,KOG0529@2759|Eukaryota
Descriptionprotein geranylgeranylation
Cds size831
COG categoryO
BRITEko00000,ko01006
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791673.548983-UTR-P-littoralis_Contig82:150390..1507051680791673.548983-UTR-P-littoralis_Contig82:150390..150705Pylaiella littoralis U1_48UTRP-littoralis_Contig82 150391..150705 -
1680791673.5643837-UTR-P-littoralis_Contig82:150778..1525771680791673.5643837-UTR-P-littoralis_Contig82:150778..152577Pylaiella littoralis U1_48UTRP-littoralis_Contig82 150779..152577 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791673.577991-CDS-P-littoralis_Contig82:152577..1532041680791673.577991-CDS-P-littoralis_Contig82:152577..153204Pylaiella littoralis U1_48CDSP-littoralis_Contig82 152578..153204 -
1680791673.5892866-CDS-P-littoralis_Contig82:154092..1542961680791673.5892866-CDS-P-littoralis_Contig82:154092..154296Pylaiella littoralis U1_48CDSP-littoralis_Contig82 154093..154296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig82.29.1prot_P-littoralis_Contig82.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig82 152578..154296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig82.29.1

>prot_P-littoralis_Contig82.29.1 ID=prot_P-littoralis_Contig82.29.1|Name=mRNA_P-littoralis_Contig82.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=277bp
EGCQEEGEDYAGDASSCGRGGSAASAGETEADFEEAEGALPGVPPGGGLL
ASFVGQEARFALKCATDKGAWQFNQQRRHALAHLAFVSYATDRILRGHHN
HHRNQSQACARRHEDGNTSSGAKFGGNTKISPCPEAAAKDVLGGGEDFIE
STVGGTRCLTYCEVTGARKLIFPLALTAVGSSSSSSSSAGYGDEPGAGLA
AGVGGHEHRHSLAGAEAGDGGGRATSASDIGVEKAALQAFRALNAFVGGL
AAADAVEAVGDKKSTRCGVAPYAINV*
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mRNA from alignment at P-littoralis_Contig82:150391..154296-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig82.29.1 ID=mRNA_P-littoralis_Contig82.29.1|Name=mRNA_P-littoralis_Contig82.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3906bp|location=Sequence derived from alignment at P-littoralis_Contig82:150391..154296- (Pylaiella littoralis U1_48)
GAGGGGTGCCAGGAAGAAGGGGAGGATTACGCGGGAGATGCAAGCAGCTG
CGGGAGAGGAGGAAGTGCGGCGAGTGCAGGAGAAACCGAGGCCGACTTTG
AAGAGGCCGAGGGGGCATTGCCCGGGGTGCCCCCTGGAGGTGGATTGCTG
GCGTCGTTTGTGGGACAGGAGGCGCGCTTCGCGTTGAAGTGCGCGACCGA
CAAGGTATGTGTGCGCGTGTGTTTACGTGTGCTTTGTAACTTTCTTTTTT
TGCCATCCTCCTGTTGTAACTTGGCCTTGCACGAGTAAATGTTTCGAGCG
CCGTCGCTTGTGCGCCATATGCTTCGTTGTCATCGTTGCGATCGTGGGTC
CCAGTAAGCCCTGTCGGCACTCCCATCATAAGCATGCAAGGGTTTGTGTC
TGGTTGAACTTTAGTACGAATGATACGAGCGACAATCAAGTCGCGAAAGG
GGAACGGCGAACAGCGAGCACGCTGGGAGGTTCACAATTGGGATACACGG
CTGTTTTCGGCGCGGCATCAACATCGGGCGCACGCGCGAACGCATGCACT
TGGTTCACCTCACTGTACAAGTATTCACCGCACTGACACGGAACCTGAAT
GGACACTGGATTTACGCCAAGCGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGACGCTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTCGTCGTTGTTGTTGTTGCTTTTGTTTGTGTAGTCCTCGTCGCTCT
TTTGCTGACCCTTCCTTCACCTCCCCCCCGTGTGTGTAGCAGGGTGCATG
GCAGTTCAATCAGCAGCGAAGGCATGCGTTGGCGCACCTCGCCTTCGTCT
CTTACGCTACCGACCGCATCTTGCGCGGACACCACAACCACCACCGCAAC
CAGTCGCAGGCTTGTGCACGACGACATGAAGATGGAAACACCAGCAGTGG
CGCAAAATTCGGCGGGAACACAAAGATCTCACCTTGCCCAGAGGCTGCTG
CTAAGGACGTTCTCGGAGGGGGTGAAGATTTTATCGAGAGTACGGTTGGG
GGGACGAGGTGTCTGACCTATTGCGAGGTGACGGGAGCGCGAAAGCTGAT
TTTCCCTCTTGCTTTGACTGCAGTAGGCAGCAGCAGTAGCAGCAGCAGCA
GCGCCGGCTACGGGGACGAGCCTGGAGCGGGCTTGGCAGCAGGGGTGGGG
GGGCACGAACATCGCCACAGTCTTGCAGGGGCAGAAGCCGGGGACGGGGG
GGGTAGAGCTACAAGTGCTAGCGATATCGGGGTAGAAAAAGCCGCACTTC
AAGCCTTTCGGGCTCTGAACGCGTTCGTCGGTGGTCTGGCTGCGGCGGAC
GCCGTCGAGGCTGTCGGGGACAAGAAGAGCACCAGGTGCGGTGTTGCCCC
GTACGCAATAAACGTGTAATGTGCGTTCGTGCAACACGTAACTTGGAAGG
TCGCTGCGGCACACGCTGCAAGTCGTGCATCTGCTCAAGTCGGCTGCGAG
ACAGGAAGAAAGGTACCTCAAATGCGATGTGTGTATGGAAAGTAGTTGTG
GTGTCGTGTACTTTTTGCTGCTCTTCGTATCCTCTTCGGCCTGGTGGTGT
GCCGATGGCATCATATGATATGTGTGTTTCTTCGTGATTGACTTGAGACC
GTTCGGGCGCGCAGCGTTCATGGTGGCTGTCGTCAATTTAAGGATATTTT
AAAAATATGCCATCGTTTTTTTTTCATTTTCGAAAGTTAAACCTGAAATA
GTGTGTAGAACACACCTCATGCGAAGTATATTCGGAAGTAATTTTTTTCC
TTCGAAGGAGTTGGCAGCAACAGGGAAGTGCAGCCGCCTACCCCTTGTAA
TTATTCTCGGAACCTGGTGGTAGCAACCTTCTGGCTATCTTTAATTTTCC
ATGTCACGTCTGCTTGCTTGCGTTACCTGACATTGTCGTTGGGCCGGTGA
AGGTAATTGCAAGCCTGATGTTGATTTTTCTCGGCACCTTTGGTAGCTTG
AATACGGTTTCTTTTGTCAATTTTTTTTCATATTTGACTTTGCTCTGTGG
ACCACAGACTCCCTCTTTTGTACTCCGGAGTACTATTTTGTAGCCTGGTG
TGACATTTCTGGGTCCGTTTTGTTTTGCTGGAGTGTTCTTGTCGCACCTG
TAATAGATTAATGGGATCCCGCAGCCTGTTGTGACCGACCACGGAAATCG
TCCATGATCGGAGGAGTACGGACATTAATTAGAAGGTACTGAGGAGAGAT
CCGATGATTTCTTGCGTGAAGACAACACTCACATCATGTAATGCGTCTGT
CGCCAAGGTCGATCACCCGAACGCTGAGTGTACGAACGTACGCATACACA
GATAAAAGTGCCTCACGCAGAACAACCGTGTTTTAGACAAACAATGCAAC
ATACCACTGGGAAGTGTGAAGACGAGGGCACAGCATGCTTTTTGTGTGCG
GTGTTAACATTTTTTGTTTCTTGCAAGCATTAAACAGAAAACTGATTTCC
GAAGTAAAATTTTGCGCGTTCCGAATATCGACGAGTTTCTAATGAGGTTC
TAGCGTCTGCATCGGATGGCCCCGTCTATTGTCAGAATGTCAGTCCCGTA
ACACCCTTAAGTCAAGGTTAGCACCAACGGAATGAGTGGGTAGGAACCGT
GTATAAAACAGTTTTCTTTTTGCAGAGTGCCGGTACGAAAGCCGCCTAGG
GCAGTTTTCAGTCGGCCTCTTCCTGGAAGTTGATGAATTAACTGCCCGCC
TCTGTCTTGGCAAAAGGTTGGACATTTTGGCGCAGGGAACTTTTTTGTGC
TTTTTCTTCCCGGTAATCGTTGATTGTGTCATTTCAGAAACAAAAAACAA
AATATCCAACAAATAAACAGCGTCCAGTGCCGATCCTGATCGAGCATTAG
TCCCTCGATAGAACTTGTCTCTGTCGTTGACTAGCGTCACGCGTTCGAGG
AATGTGGAAGGGGACTTAACCACCGCTCGTCATATTGACTTCGATGTACA
AATCGATTTTTTTCAATCAGATTCGAGCAAAACATTGTTGGAGGAACATC
TGACGCCTGCGAAATTTCGCAAGTGAGTGTTTCGTCTGGCATCAATGCGA
CCAGGGCTTCTTTAAAAGGGGTCGGCAACGCGTGCTGCGCTACCCATCCC
ATTACGCGAGCGGTAACAAAACAACCAACGAACACCAGCGAGGGACAAAA
ACATAACAGAGGAGGGGGGTGTTCCATCCCGCGGCGCGTGCTCCTCGCAT
CTACAAGAACGAGCAGTTATCTTGGAAGGACACAAAACTAGCACAAAAAA
AATAAATTCAGTGTTGAGAGCAAGCGACAGACAGCCCGAAAAAAGCACGC
CCCAAAAATGTCGACTCGACTCTTCCAACCTTCACGGGTCACTCGACACA
CGAAAGTCAACACCGCTAATGAAACACTCGGACAATCGCGGGCCTTTTCA
GTGGCACACCCAGCAAGAACGAGCGCTCACTGATTGGCGTCAAATATAAC
ATGACACCCCCCCCCTCCCTATGAAGGCGCGCGCACGACAAAAAAGTGCG
CTCCCATCCCTAGGGGAGCGCAGTTCATGTCAAGTCAAAAAGCTAGCTGA
CGTTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig82:150391..154296-

>mRNA_P-littoralis_Contig82.29.1 ID=mRNA_P-littoralis_Contig82.29.1|Name=mRNA_P-littoralis_Contig82.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=831bp|location=Sequence derived from alignment at P-littoralis_Contig82:150391..154296- (Pylaiella littoralis U1_48)
GAGGGGTGCCAGGAAGAAGGGGAGGATTACGCGGGAGATGCAAGCAGCTG
CGGGAGAGGAGGAAGTGCGGCGAGTGCAGGAGAAACCGAGGCCGACTTTG
AAGAGGCCGAGGGGGCATTGCCCGGGGTGCCCCCTGGAGGTGGATTGCTG
GCGTCGTTTGTGGGACAGGAGGCGCGCTTCGCGTTGAAGTGCGCGACCGA
CAAGGGTGCATGGCAGTTCAATCAGCAGCGAAGGCATGCGTTGGCGCACC
TCGCCTTCGTCTCTTACGCTACCGACCGCATCTTGCGCGGACACCACAAC
CACCACCGCAACCAGTCGCAGGCTTGTGCACGACGACATGAAGATGGAAA
CACCAGCAGTGGCGCAAAATTCGGCGGGAACACAAAGATCTCACCTTGCC
CAGAGGCTGCTGCTAAGGACGTTCTCGGAGGGGGTGAAGATTTTATCGAG
AGTACGGTTGGGGGGACGAGGTGTCTGACCTATTGCGAGGTGACGGGAGC
GCGAAAGCTGATTTTCCCTCTTGCTTTGACTGCAGTAGGCAGCAGCAGTA
GCAGCAGCAGCAGCGCCGGCTACGGGGACGAGCCTGGAGCGGGCTTGGCA
GCAGGGGTGGGGGGGCACGAACATCGCCACAGTCTTGCAGGGGCAGAAGC
CGGGGACGGGGGGGGTAGAGCTACAAGTGCTAGCGATATCGGGGTAGAAA
AAGCCGCACTTCAAGCCTTTCGGGCTCTGAACGCGTTCGTCGGTGGTCTG
GCTGCGGCGGACGCCGTCGAGGCTGTCGGGGACAAGAAGAGCACCAGGTG
CGGTGTTGCCCCGTACGCAATAAACGTGTAA
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