mRNA_P-littoralis_Contig809.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig809.39.1
Unique NamemRNA_P-littoralis_Contig809.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig809.39.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.560e-21
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 2 
Query:  557 FTQDILEHRFAHIRAGMGTHKAPTASQAAQAGMNGDTCRLSHGERRRNASRKGGQPFEIQQGATLRMALPVN 772
            F+QDILEHRFAHIR GMGTHKAPTA+QAA+   +GDTCR+SHG +RRNASR  G  FE+Q  A++R+ALPVN
Sbjct:  797 FSQDILEHRFAHIRTGMGTHKAPTATQAARQAKHGDTCRVSHGLQRRNASRSTGS-FEVQSSASIRVALPVN 867
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BLAST of mRNA_P-littoralis_Contig809.39.1 vs. uniprot
Match: A0A6H5K1G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G6_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.630e-18
Identity = 50/100 (50.00%), Postives = 57/100 (57.00%), Query Frame = 3 
Query:  255 EMDTDQHSIPRRQSLGSRPAITPSLSVQRAEDGRRKRRTSGXXXXXXXXXXXXXXXXXAE---YPPGFRRGRAGIDEAKLPVYKFLQQGVREEGAVELLT 545
            +MDT   S P RQSLG+RPA+TP+ S ++ ED RRKRRTSG                      YP GF+ GR G D AKLPVY FLQQG  EEG  E  T
Sbjct:   23 DMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPRGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTT 122
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BLAST of mRNA_P-littoralis_Contig809.39.1 vs. uniprot
Match: A0A6H5KRI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI1_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.960e-18
Identity = 59/129 (45.74%), Postives = 70/129 (54.26%), Query Frame = 3 
Query:  255 EMDTDQHSIPRRQSLGSRPAITPSLSVQRAEDGRRKRRTSGXXXXXXXXXXXXXXXXXAE---YPPGFRRGRAGIDEAKLPVYKFLQQGVREEGAVELLTKE--STLLRIFSS----------TGSRTS 596
            +MDT   S P RQSLG+RPA+TP+ S ++ ED RRKRRTSG                      YP GF+ GR G D AKLPVY FLQQG  EEG  E  T E  + + R +SS          TG+RTS
Sbjct:   23 DMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPCGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTTAEVHAHVARWWSSYADSNEDRAFTGNRTS 151
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BLAST of mRNA_P-littoralis_Contig809.39.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.000e-16
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 2 
Query:  557 FTQDILEHRFAHIRAGMGTHKAPTASQAAQAGMNGDTCRLSHGERRRNASRKGGQPFEIQQGATLRMALPVN 772
            F+QDILEHRFAHIR+G GTHK PTA QA +A   GDT R+ HG RRRN+SR  G  F+++    +R A P N
Sbjct:  573 FSQDILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSAGMAFQLEDSQGVRAAFPAN 644
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig809.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KFP1_9PHAE1.560e-2170.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1G6_9PHAE3.630e-1850.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KRI1_9PHAE5.960e-1845.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE2.000e-1658.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig809contigP-littoralis_Contig809:116194..117394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size778
Hectar predicted targeting categoryother localisation
Exons3
Cds size399
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791656.998866-UTR-P-littoralis_Contig809:116193..1164421680791656.998866-UTR-P-littoralis_Contig809:116193..116442Pylaiella littoralis U1_48UTRP-littoralis_Contig809 116194..116442 +
1680791657.0118723-UTR-P-littoralis_Contig809:116669..1166771680791657.0118723-UTR-P-littoralis_Contig809:116669..116677Pylaiella littoralis U1_48UTRP-littoralis_Contig809 116670..116677 +
1680791657.0459073-UTR-P-littoralis_Contig809:117272..1173941680791657.0459073-UTR-P-littoralis_Contig809:117272..117394Pylaiella littoralis U1_48UTRP-littoralis_Contig809 117273..117394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791657.0242722-CDS-P-littoralis_Contig809:116677..1168391680791657.0242722-CDS-P-littoralis_Contig809:116677..116839Pylaiella littoralis U1_48CDSP-littoralis_Contig809 116678..116839 +
1680791657.0346277-CDS-P-littoralis_Contig809:117035..1172721680791657.0346277-CDS-P-littoralis_Contig809:117035..117272Pylaiella littoralis U1_48CDSP-littoralis_Contig809 117036..117272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig809.39.1prot_P-littoralis_Contig809.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig809 116678..117272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig809.39.1

>prot_P-littoralis_Contig809.39.1 ID=prot_P-littoralis_Contig809.39.1|Name=mRNA_P-littoralis_Contig809.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MDTDQHSIPRRQSLGSRPAITPSLSVQRAEDGRRKRRTSGRAPAGTDAAS
TSAKEEGAEYPPGFRRGRAGIDEAKLPVYKFLQQGVREEGAVELLTKEST
LLRIFSSTGSRTSGLEWGRTRLLRRLRRPKLE*
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mRNA from alignment at P-littoralis_Contig809:116194..117394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig809.39.1 ID=mRNA_P-littoralis_Contig809.39.1|Name=mRNA_P-littoralis_Contig809.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1201bp|location=Sequence derived from alignment at P-littoralis_Contig809:116194..117394+ (Pylaiella littoralis U1_48)
GGACCAGAGTGGTACAGATTTCATGCTCAGTGCATGATGACGTGTACCCT
GCTCCTGCTGTTGTGCACTTTTTCGTGAACACAAAAAAACTAGTTCGCGG
TACAGGAGTACAGCAGTACTGCTGTAACTGCTGTATATACTGCTGTTTAA
CGTATGTTGTGTGAGATCAGTCAGCAAGTGTGGGTCCAACACAACATAAC
AGCAGCAGAAATCATCATTCGGGTCTGGAAATTGATTCACACGATATAGG
TGCAAAATAGAATACTGATGTTGTTGGTTGTTGCTCCCCTGTCAGAAGCT
GTATGGCACCTTCTCTCCTTCCTCGTACACACACACCATAGCATCTTCTT
TACCATGGGTATCCCTTGTAGCCTCTTTAGGGATGTAGCCCGCCTGTTGC
AGGCCGTCGTTAGGCGCCCTGATTGCGCCAAAACCCAGTAGTTATTCGGT
TGCCCTTACGCCCGCGTCTCCGCCAGGTACTGAAATGGACACCGATCAAC
ACTCCATCCCAAGGCGCCAAAGCCTGGGGTCTCGTCCTGCCATTACACCA
TCACTTTCGGTCCAGAGGGCCGAAGACGGGAGGCGTAAGCGACGAACATC
CGGACGGGCCCCCGCTGGAACAGATGCTGCATCCACCTCCGCGAAGGTGC
GCCGATCATAGTCTTTGTTTTGTTCCATGCAGAGGGTGAACGAGGTCCAT
GACAGTCAGTTTAGTTTTCAGACCCCGTTTGAGGTCGATGGTCGCTCTTT
TACTTCCCGCCACACCAGAACCCAGACAATTAGCATATGACACGAAGGGG
ATCGCTCGCTACTATCTGATGGACATGTGCCGATCTCTGCAGGAAGAGGG
GGCGGAATACCCTCCTGGGTTTCGACGAGGTAGGGCGGGAATCGATGAGG
CGAAGCTGCCTGTGTACAAGTTCCTACAGCAAGGCGTACGGGAAGAGGGC
GCGGTCGAACTCCTCACCAAGGAAAGCACTTTACTCAGGATATTCTCGAG
CACAGGTTCGCGCACATCAGGGCTGGAATGGGGACGCACAAGGCTCCTAC
GGCGTCTCAGGCGGCCCAAGCTGGAATGAACGGAGATACCTGTCGGCTGT
CTCACGGTGAACGACGTCGCAACGCGTCAAGAAAGGGCGGACAGCCGTTC
GAGATCCAACAGGGCGCAACTCTGCGCATGGCATTGCCTGTAAACAATGA
A
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Coding sequence (CDS) from alignment at P-littoralis_Contig809:116194..117394+

>mRNA_P-littoralis_Contig809.39.1 ID=mRNA_P-littoralis_Contig809.39.1|Name=mRNA_P-littoralis_Contig809.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig809:116194..117394+ (Pylaiella littoralis U1_48)
ATGGACACCGATCAACACTCCATCCCAAGGCGCCAAAGCCTGGGGTCTCG
TCCTGCCATTACACCATCACTTTCGGTCCAGAGGGCCGAAGACGGGAGGC
GTAAGCGACGAACATCCGGACGGGCCCCCGCTGGAACAGATGCTGCATCC
ACCTCCGCGAAGGAAGAGGGGGCGGAATACCCTCCTGGGTTTCGACGAGG
TAGGGCGGGAATCGATGAGGCGAAGCTGCCTGTGTACAAGTTCCTACAGC
AAGGCGTACGGGAAGAGGGCGCGGTCGAACTCCTCACCAAGGAAAGCACT
TTACTCAGGATATTCTCGAGCACAGGTTCGCGCACATCAGGGCTGGAATG
GGGACGCACAAGGCTCCTACGGCGTCTCAGGCGGCCCAAGCTGGAATGA
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