mRNA_P-littoralis_Contig808.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig808.37.1
Unique NamemRNA_P-littoralis_Contig808.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig808.37.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.800e-8
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    4 PSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQA 192
            P  QS+ D   AL+ AA+      G   L A TRAL  LH  GV++LSLFEVLVF+Y+WH +A
Sbjct:  786 PGLQSEVDSDEALFWAAKFSKVVGGQSKLTA-TRALDALHRDGVRVLSLFEVLVFTYYWHRKA 847
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BLAST of mRNA_P-littoralis_Contig808.37.1 vs. uniprot
Match: A0A6H5JN33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN33_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.100e-7
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:   13 QSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 249
            QSQ + ++ L+ +A  QG       L AATRA+  L  +G+++LSLFEVLVF+Y W     E    +  LG+ GWT  +
Sbjct:  107 QSQVNVYDLLHASAETQGPVPKAANL-AATRAVAALWEAGIRVLSLFEVLVFTYVWLRNITEDEPDMLELGATGWTLRR 184
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BLAST of mRNA_P-littoralis_Contig808.37.1 vs. uniprot
Match: A0A6H5JGB2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB2_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.150e-6
Identity = 31/80 (38.75%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:   13 QSQADEHNALYMAARIQGGEAGPETLR-AATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 249
            Q+Q + ++ L+ +A  QG    PE +  AATRA+  L  +G+++LS FEVLVF+Y W     E    +  LG+ GWT  +
Sbjct:  362 QNQVNVYDLLHASAETQGPV--PEAVNLAATRAVAALREAGIRVLSFFEVLVFTYVWLRNIAEDEPGMLELGATGWTLRR 439
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BLAST of mRNA_P-littoralis_Contig808.37.1 vs. uniprot
Match: A0A6H5JGH9_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH9_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.200e-6
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:   13 QSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 249
            QSQ + ++ L+ +A  QG       L AATRA+  L  +GV++LSLFEVL+F+Y W     E    +  LG+ GWT  +
Sbjct:  452 QSQVNVYDLLHASAETQGPVPKAVNL-AATRAVAGLREAGVRVLSLFEVLIFTYVWLRNIAEDEPGMLELGATGWTLRR 529
[Close]
BLAST of mRNA_P-littoralis_Contig808.37.1 vs. uniprot
Match: A0A6H5JT09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT09_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 2.440e-5
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:   13 QSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 249
            QSQ + ++ L  +A  QG       L AATRA+  L  +G+++L LFEVL+F+Y W     E    +  LG+ GWT  +
Sbjct:   62 QSQLNVYDLLLASAETQGPVPKAVNL-AATRAVAALREAGIRVLFLFEVLIFTYVWLRNIAEDEPGMLELGATGWTLRR 139
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig808.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KPP3_9PHAE5.800e-850.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN33_9PHAE8.100e-740.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGB2_9PHAE3.150e-638.75CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JGH9_9PHAE3.200e-640.51CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JT09_9PHAE2.440e-537.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig808contigP-littoralis_Contig808:120418..120718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size302
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791656.1471453-CDS-P-littoralis_Contig808:120418..1207181680791656.1471453-CDS-P-littoralis_Contig808:120418..120718Pylaiella littoralis U1_48CDSP-littoralis_Contig808 120419..120718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig808.37.1prot_P-littoralis_Contig808.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig808 120419..120718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig808.37.1

>prot_P-littoralis_Contig808.37.1 ID=prot_P-littoralis_Contig808.37.1|Name=mRNA_P-littoralis_Contig808.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
QPSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSL
FEVLVFSYHWHVQARESGSQVAVLGSDGWTTEKQGQAQGQGQGQMHGLAQ
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mRNA from alignment at P-littoralis_Contig808:120418..120718-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig808.37.1 ID=mRNA_P-littoralis_Contig808.37.1|Name=mRNA_P-littoralis_Contig808.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=301bp|location=Sequence derived from alignment at P-littoralis_Contig808:120418..120718- (Pylaiella littoralis U1_48)
CAGCCATCTCCTCAAAGCCAAGCAGACGAGCACAATGCTCTCTACATGGC
GGCTAGAATACAAGGGGGAGAAGCGGGCCCGGAAACCCTACGGGCGGCTA
CGAGGGCCTTGACGGTCTTGCATGGAAGCGGCGTGAAGATACTGTCATTG
TTCGAGGTGCTCGTATTCAGCTATCACTGGCATGTACAGGCAAGGGAGTC
TGGGTCACAAGTGGCGGTGCTGGGGAGCGACGGGTGGACCACGGAGAAGC
AGGGGCAGGCACAGGGACAGGGGCAGGGGCAAATGCATGGGCTGGCGCAG
G
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Coding sequence (CDS) from alignment at P-littoralis_Contig808:120418..120718-

>mRNA_P-littoralis_Contig808.37.1 ID=mRNA_P-littoralis_Contig808.37.1|Name=mRNA_P-littoralis_Contig808.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig808:120418..120718- (Pylaiella littoralis U1_48)
CAGCCATCTCCTCAAAGCCAAGCAGACGAGCACAATGCTCTCTACATGGC
GGCTAGAATACAAGGGGGAGAAGCGGGCCCGGAAACCCTACGGGCGGCTA
CGAGGGCCTTGACGGTCTTGCATGGAAGCGGCGTGAAGATACTGTCATTG
TTCGAGGTGCTCGTATTCAGCTATCACTGGCATGTACAGGCAAGGGAGTC
TGGGTCACAAGTGGCGGTGCTGGGGAGCGACGGGTGGACCACGGAGAAGC
AGGGGCAGGCACAGGGACAGGGGCAGGGGCAAATGCATGGGCTGGCGCAG
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