mRNA_P-littoralis_Contig808.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig808.21.1
Unique NamemRNA_P-littoralis_Contig808.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig808.21.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.460e-27
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 2 
Query:    2 ASISTFRNLKPGCFNRNSWNCMNVGMSSKVLSGTMVRIIDKVQFDRVTMGESPDLELECYAALASRVDAFIDIFN 226
            ASI+TFR + P CFNRNSWNCMNV  S+KVLSGT+V +I+KVQ D +TMG+  DLEL+CYAALA+++DAFIDIFN
Sbjct:  452 ASITTFRKVVPSCFNRNSWNCMNVSYSAKVLSGTIVCMIEKVQRDLLTMGKPLDLELDCYAALAAKMDAFIDIFN 526
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BLAST of mRNA_P-littoralis_Contig808.21.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.970e-15
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 2 
Query:    2 ASISTFRNLKPGCFNRNSWNCMNVGMSSKVLSGTMVRIIDKVQFDRVTMGESPDLELECYAALASRVDAFIDIFN 226
            A+++ F  +  G FNR ++ CMNV +S+KV+SGT+VR I +V+ ++ T GESPDL L CY  LA  ++ F+DIFN
Sbjct:  859 ATLTIFPGMPVGAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANQETRGESPDLALGCYEGLAVHLNDFVDIFN 933
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BLAST of mRNA_P-littoralis_Contig808.21.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.970e-15
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 2 
Query:    2 ASISTFRNLKPGCFNRNSWNCMNVGMSSKVLSGTMVRIIDKVQFDRVTMGESPDLELECYAALASRVDAFIDIFN 226
            A+++ F  +  G FNR ++ CMNV +S+KV+SGT+VR I +V+ ++ T GESPDL L CY  LA  ++ F+DIFN
Sbjct:  768 ATLTIFPGMPVGAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANQETRGESPDLALGCYEGLAVHLNDFVDIFN 842
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BLAST of mRNA_P-littoralis_Contig808.21.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 8.890e-12
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 2 
Query:    2 ASISTFRNLKPGCFNRNSWNCMNVGMSSKVLSGTMVRIIDKVQFDRVTMGESPDLELECYAALASRVDAFIDIFN 226
            A+++ F  +    FNR ++ CMNV +S+KV+SGT+VR I +V+ +R T GE PDL L CY      ++ F+DIFN
Sbjct:  666 ATLTIFPGMPVSAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANRETRGEPPDLALGCYEG---HLNDFVDIFN 737
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig808.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE2.460e-2770.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF4_9PHAE1.970e-1549.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI1.970e-1549.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M0_9PHAE8.890e-1245.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig808contigP-littoralis_Contig808:69871..70413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size228
Hectar predicted targeting categoryother localisation
Exons2
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791655.263409-CDS-P-littoralis_Contig808:69870..700101680791655.263409-CDS-P-littoralis_Contig808:69870..70010Pylaiella littoralis U1_48CDSP-littoralis_Contig808 69871..70010 -
1680791655.2772071-CDS-P-littoralis_Contig808:70325..704131680791655.2772071-CDS-P-littoralis_Contig808:70325..70413Pylaiella littoralis U1_48CDSP-littoralis_Contig808 70326..70413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig808.21.1prot_P-littoralis_Contig808.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig808 69871..70413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig808.21.1

>prot_P-littoralis_Contig808.21.1 ID=prot_P-littoralis_Contig808.21.1|Name=mRNA_P-littoralis_Contig808.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
GIHLDLPQLEAGVLQQEQLELHERRHVFEGAIGDDGSYHRQGSVRPRDHG
RITRPGVGVLRSTSVEGGCLHRHLQR
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mRNA from alignment at P-littoralis_Contig808:69871..70413-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig808.21.1 ID=mRNA_P-littoralis_Contig808.21.1|Name=mRNA_P-littoralis_Contig808.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=543bp|location=Sequence derived from alignment at P-littoralis_Contig808:69871..70413- (Pylaiella littoralis U1_48)
GGCATCCATCTCGACCTTCCGCAACTTGAAGCCGGGGTGCTTCAACAGGA
ACAGCTGGAACTGCATGAACGTCGGCATGTCTTCGAAGGTGATCGACCGC
TGTTAGAAGCGTAATCATAGACCTCATTGTCTCGGGTGGGCGGTAAACCT
TCATATGCGTGGAACGTGTCACGTGTATAAATCCCCTTGCCTCGTGTCAT
GCCGCATTTATATCCCACGAGGGTTACAAGCTAGCGTTACTGAGCACGGC
AAACATGGTAGTGCTAAGCGCTTGCAGTACTCTGTGTTGTGTTCGAAGGT
CGTGTGCACGAATGGCTTGTAGACGATGCCGAGAGGGGCGCATGCAGTCT
CGATCCATCTCTCACCCGAGACCGTTCCATCATGTTGTCCGTTATTGTCC
TAGGTGCTATCGGGGACGATGGTTCGTATCATCGACAAGGTTCAGTTCGA
CCGCGTGACCATGGGAGAATCACCCGACCTGGAGTTGGAGTGCTACGCAG
CACTAGCGTCGAGGGTGGATGCCTTCATCGACATCTTCAACGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig808:69871..70413-

>mRNA_P-littoralis_Contig808.21.1 ID=mRNA_P-littoralis_Contig808.21.1|Name=mRNA_P-littoralis_Contig808.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig808:69871..70413- (Pylaiella littoralis U1_48)
GGCATCCATCTCGACCTTCCGCAACTTGAAGCCGGGGTGCTTCAACAGGA
ACAGCTGGAACTGCATGAACGTCGGCATGTCTTCGAAGGTGCTATCGGGG
ACGATGGTTCGTATCATCGACAAGGTTCAGTTCGACCGCGTGACCATGGG
AGAATCACCCGACCTGGAGTTGGAGTGCTACGCAGCACTAGCGTCGAGGG
TGGATGCCTTCATCGACATCTTCAACGG
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