mRNA_P-littoralis_Contig806.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig806.24.1
Unique NamemRNA_P-littoralis_Contig806.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig806.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig806contigP-littoralis_Contig806:99086..102578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1145
Hectar predicted targeting categoryother localisation
Exons4
Cds size747
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791654.6528754-CDS-P-littoralis_Contig806:99085..993191680791654.6528754-CDS-P-littoralis_Contig806:99085..99319Pylaiella littoralis U1_48CDSP-littoralis_Contig806 99086..99319 -
1680791654.6664586-CDS-P-littoralis_Contig806:100341..1004031680791654.6664586-CDS-P-littoralis_Contig806:100341..100403Pylaiella littoralis U1_48CDSP-littoralis_Contig806 100342..100403 -
1680791654.6778939-CDS-P-littoralis_Contig806:101304..1015871680791654.6778939-CDS-P-littoralis_Contig806:101304..101587Pylaiella littoralis U1_48CDSP-littoralis_Contig806 101305..101587 -
1680791654.690138-CDS-P-littoralis_Contig806:102012..1021801680791654.690138-CDS-P-littoralis_Contig806:102012..102180Pylaiella littoralis U1_48CDSP-littoralis_Contig806 102013..102180 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791654.7117586-UTR-P-littoralis_Contig806:102180..1025781680791654.7117586-UTR-P-littoralis_Contig806:102180..102578Pylaiella littoralis U1_48UTRP-littoralis_Contig806 102181..102578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig806.24.1prot_P-littoralis_Contig806.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig806 99086..102180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig806.24.1

>prot_P-littoralis_Contig806.24.1 ID=prot_P-littoralis_Contig806.24.1|Name=mRNA_P-littoralis_Contig806.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=249bp
MHHRHHQKRPPPSYHWEGFGRKNTKPPWFDCRLYDKDRRDVAWVIKDFGP
PSAVNKPGREGAAPFVHDPDSRIYRPTVPAIVAGGSLGVEVPATPSSRML
VPRGSEFDGGGKDMPGVGGGIKNKLALLREEASRHSHLQMLANMEVSRRS
ELRETICGRGRTIKKALIYPQTVTHQQALNLEKRTGPGLAYDAPQVARAA
AAAAAAAAVDPHPWNQHMYLPRYSRTRADFPGLSRNRSSPASLPSALQ*
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mRNA from alignment at P-littoralis_Contig806:99086..102578-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig806.24.1 ID=mRNA_P-littoralis_Contig806.24.1|Name=mRNA_P-littoralis_Contig806.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3493bp|location=Sequence derived from alignment at P-littoralis_Contig806:99086..102578- (Pylaiella littoralis U1_48)
CACAAAAGAAGGGGCTCACGAGGTTGTGACGGCTGGTTCACAGGACACGA
TGAAAAGAAGATCAAGCGCCGAGACCACGAGATGTTGAAGTAGTGACCGG
AATTGGGTAAAAGCAGGAACCACCGGAAAAGTCAGTGTGACTGCATAATC
TTGCCTAGTCTGTGCTGCAGGCTCGTGTTGGGTGCCGGTCAAGCGTTGAT
ACCAAAGTAGCCCGAGAGCTTGAGGGTACTACCAAGCGTAAAACCTTGTC
TCGACGAAAATAGTTCTACTTAAAAGTGATACATCGACTTCCAGTTGACC
AAGCCGAGAGATCACAAAACTTCCCTCGAGGGGCGCATCGGTTTTAACAA
ATAGTTAAGTGTTGTTTATGGTGCGCTGTCCCACGAATCAGAGATAGGAT
GCATCATCGCCATCACCAAAAGAGGCCTCCTCCGTCGTACCACTGGGAAG
GCTTCGGCAGGAAGAACACAAAACCGCCGTGGTTCGACTGCCGGCTGTAC
GACAAGGACCGTCGAGATGTAGCATGGGTAATCAAAGACTTCGGGCCCCC
GTCGGCGGTGAACAAGGTGAGGGATATTTCGCTTGTGTGACTGCAAATAT
ATGATACGTACAACCAGCTAGGGTGGTGCCATGAAGAGTATCTCCTGCTA
AGTGTAAACCTACAGCAGTGTATCTACAGTAAATGTTCTTGGCGTTCGTC
TGAGTGGGCCGTGTTCCGCCGGTGTAGCGGGACTCTTCGACATTGATCAG
CGATGGCGTACTGAGACCTTTTCTCTGTGCTTCGACTGACTCTTCTCTTT
GCTGATCCAGCGTATCGGCATACACAAGGCATAGAAAGATAAAGGGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAATTGTGAGCATCTGGCGCAAATATT
CCTTGAGCCACCCGTGAATTCCCGGACGTGAAGTCAAATGTTCGTTTTAG
CTAAGGACGTGCGACCTATTTCTGTGCGGCGCGCACCGCAGCCGGGCAGG
GAAGGAGCAGCGCCGTTCGTCCACGACCCGGACTCTCGCATCTACCGGCC
TACCGTGCCAGCGATAGTGGCCGGCGGGAGCCTCGGCGTAGAAGTCCCGG
CCACTCCGTCCAGCCGAATGCTAGTACCCCGAGGTTCGGAGTTTGATGGC
GGTGGGAAGGACATGCCGGGCGTTGGCGGTGGGATCAAGAACAAGCTGGC
GTTACTGCGAGAGGAGGCGTCTCGGCATTCCCACCTTCAGATGCTCGCCA
ACATGGAGGTTTCTCGGCGATCAGGTGCGTGTTGTTCACCATTATGACTC
GTGTGTTGCGTTCTTGAGAAGGAAATCAAAGCATCAGAGAAGAAACGCCC
AACCGACACAGGATTCAAAAGGGGGTGTTTGCGTCCCGTTAGTTTGTTTT
GGGAAGCAGATATTGTACGAGTCGCCAGTATGTGTACATTTACGAGATGC
GTGCTTGTGATGCTCTTTGTCGCCCGGGTTTGACACCCATGCATGCACAG
AAAGTAGATACTAGGGTTGATATCATACTTCGAAGTACGAGAAAGATACT
TTGACGATATCCTTGGATTATATATTATGTTATCACTGCTGCTGCGGTGC
TGTAGGTACGATGCGTATCATGTGACCCAGAGCATTTACAATCATGCGAC
GAAACAAAAAGCGCAACAATGCCGCCGTTTTCAGAGAGGGTACGTTCGCT
GGTTTATGTTGACAGCCACGTTACTACTGTTCCACAGCACCTGTATCTTT
CTATATTCTACACACATACACCGCCGAATGGGACTGACCCCGCTGTGTCT
ACCGCTGATGGTGCTACTATTGTTCGTGTGTGGTAAGCAAAGAAATTCGA
ATAATACTGGTATTTGGACCGTTATGCCCTTCTCGCAGCCTCTAGTATGA
CTCAACTACGCGGACAATACGACGCATCATGCCACCCAGCGCCCCCCACC
GGTGATAAATATGGAGTGTTTTTTCCCACAAAAGGTTAAAGACTCAACCG
CAAAGCCGCCATATGTTCTGTCTATGGCCTTGTCAGATTCGATGTTGCCC
CGCCCCCTGGCGAGCTACATGCAGGTTGGGGTGGGGTTTTAAAGGGGGCA
TAGAAAAATGTGTCCCACCATACCCACTCGTCCCCGCGTATGTTGCCGTC
TTTATCCTGGCGGTGCCCCCTGCAGAACTACGCGAGACTATATGCGGAAG
GGGTCGAACCATCAAGAAGGCACTGATTTACCCTCAGGTATACGGGGGGG
TTGTGTGCGGGGAGTGGAAAGAGAATCAACAGCAGGCGTAGTTACGGTCA
ATCTGATTAATTGTGCTTCGTCGTAGGTGTAGTATTGATTATCATATGAT
AGGCAGGGTGGAGAGGAAGTATTGATGCATTTACCATGTGGAGTGTGGCA
TAGAAGCGATACACTCAACACAGCACAGCACAGCACAGCACAGGTCTTAC
TTCATGTAATGGATAGTGAGAGTGAACGCCACGTTTGCCCCCTCCTTATT
CTCACAAGCGGTGAACGGCTCATTCCAGTATGCGACCATCAAGATTGCGA
CTGATTCTACGATAGCACACTCCCCAAATCCAGCGAATTTCTATAACCAA
CCTCTCATGGCTTTTTGAAACCAGGAATGGGTCTATGGAAAAAACGAGAA
TACATCTGACATGTGTATGTATGCCGAGGGCAATAAAAAATGAAATCGCC
CTCGTAAGCGACGCCAGACTTCCGATTGTAGGGCCAGGAGCTGGTTTCAA
AACCGGCGATCTTCGTTATAAAAATCGTGGGAGGGCTATCGTAAAACGAC
CGTTGCATTGACAGAAATGTCTGATGTAAAGTACCTGAAATGCGAAAATG
GCCCTTCACGCCCCAGATAAACTGGGAGGTATACAGACTACACACGAGTG
TATAACGAGATACATTTGTTTGAAAGAAGGGAAAAACAGACCAGTGCTGC
TTCTACTACGGTATTACTACGGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTATTGTTGTACTGGCTTTCGGGAACACAGGGA
CTAGGCAGACTGAGAATTCCCGAAGAGACATCTGAGGGGTTTGGAAATAG
TGCACCCATCTCTATTCGAAGTTGTGCCGACAACCTACGCACGCTTCCCA
CCGATTTCTTTCGAAAAGTTTACTATCTATTCTGACCCTTATTCCGCCTG
TCTCTGCTGCTGCTGATGCCCCTTTGCCCTCGCGGTAACCCCTCCCATTT
ATTGCTCAGACTGTGACGCATCAGCAGGCCTTGAATCTGGAGAAACGGAC
CGGCCCGGGTCTCGCCTATGATGCGCCGCAGGTAGCCCGTGCTGCCGCCG
CTGCTGCCGCCGCCGCTGCCGTCGACCCGCATCCCTGGAACCAGCACATG
TACCTCCCGAGGTACTCGAGGACCAGGGCTGATTTTCCGGGCCTTTCGCG
GAATCGTTCATCGCCAGCAAGCCTACCGAGCGCTTTGCAGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig806:99086..102578-

>mRNA_P-littoralis_Contig806.24.1 ID=mRNA_P-littoralis_Contig806.24.1|Name=mRNA_P-littoralis_Contig806.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=747bp|location=Sequence derived from alignment at P-littoralis_Contig806:99086..102578- (Pylaiella littoralis U1_48)
ATGCATCATCGCCATCACCAAAAGAGGCCTCCTCCGTCGTACCACTGGGA
AGGCTTCGGCAGGAAGAACACAAAACCGCCGTGGTTCGACTGCCGGCTGT
ACGACAAGGACCGTCGAGATGTAGCATGGGTAATCAAAGACTTCGGGCCC
CCGTCGGCGGTGAACAAGCCGGGCAGGGAAGGAGCAGCGCCGTTCGTCCA
CGACCCGGACTCTCGCATCTACCGGCCTACCGTGCCAGCGATAGTGGCCG
GCGGGAGCCTCGGCGTAGAAGTCCCGGCCACTCCGTCCAGCCGAATGCTA
GTACCCCGAGGTTCGGAGTTTGATGGCGGTGGGAAGGACATGCCGGGCGT
TGGCGGTGGGATCAAGAACAAGCTGGCGTTACTGCGAGAGGAGGCGTCTC
GGCATTCCCACCTTCAGATGCTCGCCAACATGGAGGTTTCTCGGCGATCA
GAACTACGCGAGACTATATGCGGAAGGGGTCGAACCATCAAGAAGGCACT
GATTTACCCTCAGACTGTGACGCATCAGCAGGCCTTGAATCTGGAGAAAC
GGACCGGCCCGGGTCTCGCCTATGATGCGCCGCAGGTAGCCCGTGCTGCC
GCCGCTGCTGCCGCCGCCGCTGCCGTCGACCCGCATCCCTGGAACCAGCA
CATGTACCTCCCGAGGTACTCGAGGACCAGGGCTGATTTTCCGGGCCTTT
CGCGGAATCGTTCATCGCCAGCAAGCCTACCGAGCGCTTTGCAGTAG
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