mRNA_P-littoralis_Contig805.30.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig805.30.2
Unique NamemRNA_P-littoralis_Contig805.30.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig805.30.2 vs. uniprot
Match: D7FSB2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSB2_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 6.580e-26
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:  175 SSISMVAQAPIAWPDEVTTPLPDQPIRARILAVAPGDVASPFEDRGKAASWFEVWSHIAKRVKWADTGMEMEV 393
            S+ SM AQA +AWPDEVT P  DQP+RARILAVAP  VASPFEDRG A  WFEVW HIAKRVKWADTG+EM+V
Sbjct:    2 STTSMAAQA-VAWPDEVTAPSLDQPVRARILAVAPDGVASPFEDRGTAVPWFEVWDHIAKRVKWADTGVEMKV 73
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig805.30.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSB2_ECTSI6.580e-2676.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig805contigP-littoralis_Contig805:94627..100606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSB2
Preferred nameVDR1
PFAMsDUF3479
Model size697
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue9.4e-28
EggNOG OGs2CNB1@1|root,2QUXT@2759|Eukaryota
Descriptionviolaxanthin
Cds size465
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791652.6530592-UTR-P-littoralis_Contig805:94626..946591680791652.6530592-UTR-P-littoralis_Contig805:94626..94659Pylaiella littoralis U1_48UTRP-littoralis_Contig805 94627..94659 +
1680791652.6915448-UTR-P-littoralis_Contig805:100407..1006061680791652.6915448-UTR-P-littoralis_Contig805:100407..100606Pylaiella littoralis U1_48UTRP-littoralis_Contig805 100408..100606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791652.670394-CDS-P-littoralis_Contig805:94659..949591680791652.670394-CDS-P-littoralis_Contig805:94659..94959Pylaiella littoralis U1_48CDSP-littoralis_Contig805 94660..94959 +
1680791652.681216-CDS-P-littoralis_Contig805:100242..1004071680791652.681216-CDS-P-littoralis_Contig805:100242..100407Pylaiella littoralis U1_48CDSP-littoralis_Contig805 100243..100407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig805.30.2prot_P-littoralis_Contig805.30.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig805 94660..100407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig805.30.2

>prot_P-littoralis_Contig805.30.2 ID=prot_P-littoralis_Contig805.30.2|Name=mRNA_P-littoralis_Contig805.30.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MMGLQLGLTCVLITALEPASCFFAGSKAIITFGTTPRHVTPQNRAQSSSI
SMVAQAPIAWPDEVTTPLPDQPIRARILAVAPGDVASPFEDRGKAASWFE
VWSHIAKRVKWADTGMEMEVSTDRIAWNKKMKILASVKRGNPSSIDVSGM
FCTL*
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mRNA from alignment at P-littoralis_Contig805:94627..100606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig805.30.2 ID=mRNA_P-littoralis_Contig805.30.2|Name=mRNA_P-littoralis_Contig805.30.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5980bp|location=Sequence derived from alignment at P-littoralis_Contig805:94627..100606+ (Pylaiella littoralis U1_48)
CTTGGTCAAGCAAGGATAAGAGGAGCTGGCGCCATGATGGGTTTACAGCT
AGGATTGACGTGTGTGCTCATCACTGCTCTTGAGCCGGCATCGTGCTTCT
TCGCGGGCAGCAAGGCCATAATTACTTTTGGGACAACTCCACGACATGTT
ACACCCCAAAATCGGGCACAATCCTCGAGCATCAGCATGGTTGCTCAAGC
TCCCATTGCATGGCCAGATGAGGTCACGACACCATTACCGGACCAGCCCA
TCCGAGCACGAATACTAGCTGTTGCGCCCGGTGATGTGGCCAGCCCTTTT
GAAGATCGTGGAAAGGCGGCGTCTTGGTTTGAGGTGTGTGCGCGTGCAGT
GGAGTGTTGCGGGCTGATGCATGCAGCAGGAGTCAGTTAGGCCGCGTTTG
TCTATACCAGTTTTAGTGCAGAAGTTGATGGTGTAGCACGTGCCATTTGT
TCGAGGTACAAGGGTCGTGTCGTACCATTTGTACAGTCAGTGTGCACATG
AGTATTTCGCTTAATGAGTAAGTCTCTCGCTTCTGTATTACGTGACGCTA
AACTTCAACGTTTGCCTAAAATGTAGGACCCTGCGTGGCATGCGTCGCTG
AGGCTGACCCCCTTCTTCGTTGATACACTCACTTACAGCAGTAGGGGTCC
CGATATAAGGACCTACAGCAGCAGTGTCAAGGAGCCAAAAGCGTCCATGT
CCATATTCAGGGAGATATTCTTACTCCTCAATAGGCACAAGGTCCTTATT
CCTCAATAGGGATAACATCCCCATTCTTCAACAGGGACATCTTGTCCTTA
TTGTATCGAGGATGAAACCCAACTAAATCATGATGAAAACAATTACCAGT
CTGTCCGGGAGTATAGTTCCGATTTGGATAAAAACGTGAATATCTTGGGG
TAGGGTACGATTTTTTTAATGCGGGTTTTTGCACTGTGTTCACGGTGAGC
TGGCCCTGAAAACTGCAAAACGAGTTTCCGAATGACCAAATCAAACGTTT
CGTATCCTATCACGAAGGAAGGTCACTCGGAGATCTTCTGGCATTACCCA
CCGGTTGAGGCGGTTAAAACCCTTTTTTTTTCTTCCTTTTATTACATCGG
ATTTGGGACCCTCTCCCGGTTCCAATAATCCATTAAAAAAGTGGTCACGA
AAAAACTGCCACCACTACGTACCAGCTTTTCAATTATCGATTTTTTTCGA
TCTTTTTTTCCTAGCGCGAGTTGTAGGCAGCCCAGTGACTTTTTAGAGCG
CGGGAACGCCCGTGCTGTTCTCGCGATTGCGCTCGCAAAAAAACAAAGTC
GAAAAAAATATTTTAGTTTTCGAAAAAAAAATCAAAGTTCGGGTATGGAA
AAAAAATATATTTTCGACTTTGTTTTTTTGCGAGCGCAATCGCGAGAACA
GCACGGGCGTTCCCCGCGCTCTAAAAAGTCATTTGGCTGCCTACAACTCG
CGCTAGCAAAAAAAGATCGAAAAAAATCGATAGTTGAAGAAAGCTGATGG
TGGTTGCAGTTTTTCGTGACCACTTTTTTAAATGGATTTTTGGAACCGGG
AGAGAGTCCCAAATCCGACGTAAAAAAAGGAAGAAAAAAAAAGGGTTTAA
ACTGCCTCAACCGGTGGGTAAATGCCCGAAGATCTCCGAGTGACCTTCCT
TCGTGATAGGATACGAAACGTTTGATTTGGTCATTCGGAAATTCGTTTTA
CACTTTTCAGGGCCAGCTCACCGTGAACACAGTGCGAAAACCCGCATTAA
AAAAATCGTACCCTACCCCAAGATATTCACGTTTTTATCCAAATCGGAAC
TATATTCCCGGACAGACTGGTACTACGGAGTAAAATGAAAACAAGTGCTC
CCTTCCTGTTTTGTTGGAATCACTGCTGTTTGTATACGAAGTATACTATC
ATACTGCTGTATAGGGGGTTGTTGTCTTGAATATACTCATTGTGTGTTTA
TGTTTGTCCTGTCCATCCCATAATATACTCTGGGCCTCAGGTGGACACAC
TAGCCGAGGTCACACTAGCCGAGGTCACACAAGCGGAAGGTACTGCTCTG
TAGCATTGCGTCTTTTTTTTTGCCGCGGGGCCAGTTCAAAGACATTTTAT
GCGTCGAATAACGTCATTTTATGAACGAAAATATGAACACGCGTATTGCA
AGTAGTGTTGTACCCAGCGTATCAGCGCGCAACACACACGAAAAAAAGAG
GGGCAACTCTCCACGAGATGACTGCTGTGCTTTTCTCATGCACCTACAGA
GTTCTACCCACCCATTTATGATTTAGTAAATGCCCTGATGTCTGTGATTC
AGCACAGGCCGGAATAAGAAACGACATTATTGCGCTACGTACGAAGAAAG
TGCCCTGTCTCAGTACTACCAGCCGACGTGTCGTCAAGCTCTATCTCGTT
GTCAGAAGGGTCGGCCTCCTCCGTGATCATGCCCTTCGCCCTCCCTTTCT
CCATCATGGCATGACGGAAGGAGGTGGTGGGTGGCGGTAACTCGTAGTTC
AGTTGTCTGTTGAGCAGGCGGGGGGGCTCCGCGAGCGCAGTACGACGCAC
CCTGAAAAAGGGAAAAACTGCCCTTATATCGGACTCGAGTCCGATGCAAG
GACAAGTTGTCCCTTTATCGGGGTGCATCGATGGCAATCGATTTTAGGGT
CCTTATTCAGGGCAATTCCTTGTTGAGGTTGTCCTTACATCGTGACCCCT
GGGGGAAAAAATGTCGTTCGGGCAGCAGAACACAGCCGTACGAAGTAAGA
TGTATGCATCGTTACGATATTTTATTCGAATCTGCTGATTTCGAATGTGA
CCAACCCCGTGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGAGCCATTTATTCTGGGCACCGGTATACACCTTTG
TAGCGGTATGAAGTGGGTGCACCAGCCGGGGTCACACAGAAGGAAGGTCA
CACACGAGCTTTTTTTTTTTAATATTGTTTCGTTGCCCACTTCTTTCCTC
TTGCGGTACTTGTCTTTGATTTTTGATGCCAGTCGAGTTCAGCATTCCCT
TCTCCCTGTTTACTCACGAGTAAATCGCTTTCGACTGCTGTAAAGTCGCA
AGCGAACGTTTTCAGAGAGAATCGAACCTTACTGCTGGTAGGTGGACGGG
TAGCCCCTAAAGCACACCAGCTGTTTTTTTAGGCAGCTGTACACTTTCAG
AAAGCCTCCAGAACTTTCCATCACAAAACCAGTATGACCATCCTCTAGCC
AGCCACACACATCCTAGCCATCCACTAAGCAAGCAACAGCATCCTAGCCA
ATCCGCCCAGGTACAGCATCCTAGCCAATCCGCGGCTTTGGGGTTAGGGT
CAGGGTTGTGGTGTGTGTTGTGTGTCTTATCTATCATCATCATACACGTC
CATCATACAGCAGTAGCTAGATTCAAACAGCAGCAGCACAGCAGTTCTGT
AGAGGCTTTCTGGGTGTACAGCTGCCTAAAAACACACCTGGTGTGCATTT
AGGGGCTACCGGATGGACGAGGGAACCACTCCACCACCGGGGCGACCGGA
GGAGGAGGAAATAACGCAGTTTTTGTTCGATTTTGGATTCATTCATTGGG
AAATGTGCTGGAGGTTAAACCGGCTGTAGCAGTATTTTAACCCACATTAA
GCAGGAAGCACATTCGTATGTACGAAGTATCACAAATGATCGAAACCTTC
GCGCTTGTCCTAACGTACAGCTGTATTTGTGTGCTCAGGATAATGGTATA
GCAGTGTAACGCTTCGGTTCGTACATACTGCATGACTTGCGACTGTACAA
TGACATGTGTAGTGGCAAGGATATTCAGCTGACTGGATGAGAAAAAGAGA
CACTTTTTGCTGGTGGATCGCTGAATAAAGCCTCGCTACAGCGACAGGGT
CTACCTTCAAAAACCGTAAATACGTAAATACAGCTTTCTGAGTCTTGCCC
TCATACTGTTGTTGTGCAGGCAGTTCTTCTTTGATGTTGGCATTTGCTTC
ATAAAGGACCGCGAATGACGAAGCGGCCCAGGCGCTTCTACAACCTAAAA
CCAAATGAGTTCCCAACAGGCGCCACGTTGCTACAAACAGATTTCGGCAG
ATGCTGACATATCATAGGATGTGCAGGTTGACAGCCGTGTGGTACAAGGA
GGAGCGGTTACACCATCTTGTATATCAATACTCCGCTATTGGCCTTCAGT
AGATCAGCAGGCACCCACGCGCCTACACCCACAGCAGTAGCAGCAGAAAC
AGGAGTCAATGGCGTCACGTGTCCCGAAATGATCTACGCACTTCGAAGCA
CATGGTAAACAAAGTCATAAACTGCCAAAAGTCATCACTGCCGCAATTAT
CACCCAACAATCTGGCTCGTTCGACAAACGCACCGCAAGAGGCGTACTCA
GAGGCCCCAACACACGCCGCGCTACAGCAGGACTGTATTGCTGTGCAGTT
TGAGACGTACGAGACAAGAAGAGCACCGTCGACCTGGCGCAAGCGTGCAG
CGTTGACCACATCTCTCTCGGCAGGTTCAATGTCTAAAAAAAAACGTCCG
CCGTTTTCGCTCTGACTGGTTCTATTTTACAAGCAGAATTTCTTGGAACT
TTCTCCTAGCGCAACGTCACCAATCTCGGCGCCCATCTTCGTTCGACGGC
TGCGTACCATGCGACTCAGATGCGCATCAAACCGAGGGAGGGCCCCGCTG
ATTTGTTCTCTTTCTCTGCCTTTGCTTCCAAGACAATGCGACGGAAACAA
TCCTACGCGATTCTGCAGCAACACACACACACACCACGCTTGACTTTATT
GGTGATATACATACGTGCTGACCCTTTCGACGATAGTGTATTGTTGTTTC
TCACATTAGCTCTTTTCTAGTATCTAGCGCCCGTGGTCACACCAAATGCT
GGAGCCATAGGAAGATCCGAAGAACACAGAAAATCAAACAGAAGAGCGCC
TACGCACGTCGAAGGAAGGCACTTCTTTGGACGTATTTGTTCCTGTGTTC
AGACTACTGAACTACGCACCACGGACAATCCTTCGGCTACAGCAGTAACC
CCTGATCCCAATCCCTCCTCCAACCAACTCTCGGTTGCTGGCTACAGTAG
AACCTACTGTCTGGAGTGCTGCCCGCACCGTACCACGTACGGTAGTCAAG
TGGAGAGAACAGCATCGAAGACACATGTGCTGTCTGAAGTGCTGCCAAAT
ATCATCCCGTCTAGATGTATGTGCAATAAAAGAGGGACAACAACCAAGGC
CATCACACAACGACGCTAAATCCCTTCCCCTACATATCTATGTGCGGGTA
CATTGTGACTACGATACCAGTAGTTGGAGAGAGTGGCTCGTTCCCCGGGA
GGATTTTCAACGGCACTCGCACTCCCTAAGGACGTACGTAGGCATTTCTG
CTACAGTATGATAGCATACTATGTATCGTCCAGGCAGTAAAAGGGAGTAT
GATATGGCACCTGCTGCTGTTGTTGTTTCAACTCTGGGGTACGTATCTCG
CAGGTATTCGGTGCAACAGCGCGGTGGTTTTGACAGGTGGTTCCCCTTCT
GGTCTGTAACTCCCCCATTCTCGGACAATTCTTGCCATTCTTGCCATTCT
TGGACAATTCTTGCAGGTGTGGAGCCACATCGCCAAGCGGGTAAAGTGGG
CTGACACAGGGATGGAAATGGAGGTGAGCACCGACCGTATTGCGTGGAAC
AAAAAAATGAAGATATTGGCGAGTGTGAAAAGAGGGAATCCGTCTTCGAT
AGACGTTTCTGGAATGTTTTGTACCCTATGAAAGGCTCCTGTTCCACACT
TGGAGCAATCGGCTCTACGTCACGTCAAGCGTAATGTCAATGCCTGCAAC
GTACATTGATCCATGTATTTGTACATACGATACTACTGGTATTATTGATA
TGTTTGTACATGCCATACTATGATATTATTCATGTGTTCACGCTTTGAAT
CCCCGCGCCATGAAGAGGAGGAGAGCAAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig805:94627..100606+

>mRNA_P-littoralis_Contig805.30.2 ID=mRNA_P-littoralis_Contig805.30.2|Name=mRNA_P-littoralis_Contig805.30.2|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig805:94627..100606+ (Pylaiella littoralis U1_48)
ATGATGGGTTTACAGCTAGGATTGACGTGTGTGCTCATCACTGCTCTTGA
GCCGGCATCGTGCTTCTTCGCGGGCAGCAAGGCCATAATTACTTTTGGGA
CAACTCCACGACATGTTACACCCCAAAATCGGGCACAATCCTCGAGCATC
AGCATGGTTGCTCAAGCTCCCATTGCATGGCCAGATGAGGTCACGACACC
ATTACCGGACCAGCCCATCCGAGCACGAATACTAGCTGTTGCGCCCGGTG
ATGTGGCCAGCCCTTTTGAAGATCGTGGAAAGGCGGCGTCTTGGTTTGAG
GTGTGGAGCCACATCGCCAAGCGGGTAAAGTGGGCTGACACAGGGATGGA
AATGGAGGTGAGCACCGACCGTATTGCGTGGAACAAAAAAATGAAGATAT
TGGCGAGTGTGAAAAGAGGGAATCCGTCTTCGATAGACGTTTCTGGAATG
TTTTGTACCCTATGA
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