mRNA_P-littoralis_Contig802.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig802.15.1
Unique NamemRNA_P-littoralis_Contig802.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig802.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig802contigP-littoralis_Contig802:121144..121518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size377
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791651.02903-UTR-P-littoralis_Contig802:121143..1211521680791651.02903-UTR-P-littoralis_Contig802:121143..121152Pylaiella littoralis U1_48UTRP-littoralis_Contig802 121144..121152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791651.0420227-CDS-P-littoralis_Contig802:121152..1215181680791651.0420227-CDS-P-littoralis_Contig802:121152..121518Pylaiella littoralis U1_48CDSP-littoralis_Contig802 121153..121518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig802.15.1prot_P-littoralis_Contig802.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig802 121153..121518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig802.15.1

>prot_P-littoralis_Contig802.15.1 ID=prot_P-littoralis_Contig802.15.1|Name=mRNA_P-littoralis_Contig802.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
MGSRAKHAVANGGKGLTKLKTNRRSVTAAGAKPSKRTPGRKKDKNKQLSP
TFSVTFSKKLSSRVTTQQDRQSELDGGNACFDSGIDLLPVDESKFQESPW
HAVAASQDLRNETVSRGCKRTR
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mRNA from alignment at P-littoralis_Contig802:121144..121518+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig802.15.1 ID=mRNA_P-littoralis_Contig802.15.1|Name=mRNA_P-littoralis_Contig802.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig802:121144..121518+ (Pylaiella littoralis U1_48)
CCAAAATCGATGGGATCGAGGGCGAAACACGCCGTCGCAAACGGGGGAAA
AGGCCTCACAAAGTTAAAAACGAACCGTCGTTCAGTCACTGCGGCCGGCG
CCAAACCATCCAAGAGGACTCCCGGACGAAAAAAGGACAAGAACAAACAG
TTGTCACCGACATTTTCTGTCACTTTTTCCAAGAAGTTGTCTAGCAGGGT
GACTACGCAACAAGACAGGCAGTCGGAGTTGGATGGCGGGAACGCTTGTT
TTGATTCCGGGATCGATCTGCTACCGGTGGATGAATCCAAATTTCAGGAG
TCACCCTGGCATGCGGTTGCCGCGTCTCAGGACCTACGGAATGAAACCGT
CTCGCGGGGATGCAAGCGTACGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig802:121144..121518+

>mRNA_P-littoralis_Contig802.15.1 ID=mRNA_P-littoralis_Contig802.15.1|Name=mRNA_P-littoralis_Contig802.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig802:121144..121518+ (Pylaiella littoralis U1_48)
ATGGGATCGAGGGCGAAACACGCCGTCGCAAACGGGGGAAAAGGCCTCAC
AAAGTTAAAAACGAACCGTCGTTCAGTCACTGCGGCCGGCGCCAAACCAT
CCAAGAGGACTCCCGGACGAAAAAAGGACAAGAACAAACAGTTGTCACCG
ACATTTTCTGTCACTTTTTCCAAGAAGTTGTCTAGCAGGGTGACTACGCA
ACAAGACAGGCAGTCGGAGTTGGATGGCGGGAACGCTTGTTTTGATTCCG
GGATCGATCTGCTACCGGTGGATGAATCCAAATTTCAGGAGTCACCCTGG
CATGCGGTTGCCGCGTCTCAGGACCTACGGAATGAAACCGTCTCGCGGGG
ATGCAAGCGTACGAGG
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