mRNA_P-littoralis_Contig80.5.4 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig80.5.4 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE) HSP 1 Score: 888 bits (2294), Expect = 1.870e-294 Identity = 537/1085 (49.49%), Postives = 683/1085 (62.95%), Query Frame = 1
Query: 496 EVIWSAEDVATADVATAISQDLVGKAERWKLLAWEPLGSHGA-------SQAPETRPLLGRYVDKHEVASIYVQDALAGRDCSACIHTEESFRALKLYRSKAWVQLLNICTIIHLILPMVEIQRCLPCLGVQQLPPYLDNNALFVGWRPTSLGSMWIESVMCILYAYHLLQQGLS---------------RLGDIPAGEKEEEENGDQEDQSRPQAEVYSLLALPPWQVARTIMVAFISVSLAGNIFSHYVFGVTWNSWRQMILPFLFISRRTYLKHFVASIIRLIPKMLPVVFLISFITFFYGFLGYIVYRDEPHSSSLLSDLQLFDSPASSALTFLRIFTARSFMLDVEKIYSGRDGVQVMTVSYGVIMFIFLLALVPAVATHNFSAESKKSYYWVKGQRKLALSRAFMLLK-QPDGTLAREDYLQLMACLRPDCDRDHTSALFSAANKVEKNQSNSLPTEDDRRNRLSKAGFFMVCALGTADFSRTQNKRMKALRSRRSRRKWARVRRRLDAALLWSRAGSTFPLSQQVLDVALLVQGYQIIKAGDDPEVRPGWVYPLGAALIAYFCIQSSLRIIAGGARAYFMEWRNTLEMSLNLIGVAFYGGLWPRGQGWHSFYQILQASRLELLWNYLHLLGPTSSEVATRLELVGPAVVRASLVLFSITYSYAVVAFAMYCSTPLGRESLESFKDDSMVKRFEAVKEVASFETLPKSFASMMYVLMFSNWPMFMDAATVMGNPFVAKVFFYSFKIFGFYFIMPVLLGSTVTAYMNVQVQPMGAGT--PAGMRSAYPSTDSLSLSKHRSFNGAGAGDAR--RRGDTD-----AKAVRRHSSFGEDRFSGKKGAPVESEIDKAVAAALAEGGEFDGTGTGRVEPILDEYRAGIDYEEGL--------------------AEESDEDGEDGSNAVGDGAS---------------SRGRHG------------------SYVDGASTEDELDHPVVIASRSRSLSQSFWAQHQASD----GGTHASTTMQGTLASLEAELTRLKTENASLRSHMDTREASVRQYVAQMHEEMQASAGD-SPSPAGQATTRR 3480
+ IWSA ++VATAIS+DLV KAERWKLL EPL A SQ PE +PLL VDKHEVASIYV+DALAGR+ C+H + S RALKL R+KAW QLLNICTI+HL+LP+VEIQRCLPC+G+Q++P LD+N+L GWRPT LGSMW+E ++C+LY Y L + L+ R GD G + E ++ + SL LPPWQ+ART MVA ++ L NIF+HY F +TW+ W ++ LPFLFISRRTYLKHFV +IR++P+MLPVVFL+SF+ FFY F+GYI+YRDEP +SSLL DL LF P+SSA+TFLR+FT+ FMLDVE IY+G G++VM +SYGVIM IFL ALVPAVA NF + Y WVK QR+LAL+RAFMLL+ + DGT+ RED+++LMACLRPDC+ HTSALF AA K + +++ S EDDR NRLSK GFFM+CALGTA FSR R SRRS KW R+R+RLDAAL WS GS FPLS+QVL+VA++VQGYQI+ GDDPE RP W YPLG LIAYFC+Q+SLR+I GAR Y M+WR+ L M LNLIGV +Y GLW G GWHSFY+ILQASR+ +LWN LH LG TSSEVA RLE V PAV+RAS VLFS+TYSY+V+AF MYC+TPLG E ++S D SM++R+ K+V SF +L +SFA+M ++M SNWP+FMDAA +GN AK+FFYSFK+ FYF+MPV+LG V +YM + + PA S+ SLS S+ +G G G A R G K+V + R G+ G A + GE G G P +G Y + ++ G DG++ + DG+ +G HG DG+ + DE PVV+ S +RS+S +FW Q D G AST MQ L +EAE NASLR+ +D+ + ++ A++++EMQ + D SPSP G+ +RR
Sbjct: 76 DAIWSA-----SEVATAISRDLVEKAERWKLLGGEPLTGSPARFAHEDRSQLPEVQPLLAHDVDKHEVASIYVKDALAGRESPTCMHNQNSLRALKLVRNKAWNQLLNICTIVHLMLPIVEIQRCLPCMGMQKIPESLDSNSLHTGWRPTLLGSMWLECLLCLLYVYDLYKVALASNHVHKRSHRGGGSDRDGDRDIGVSKGEG-------AKASSWHSSLARLPPWQLARTCMVALLAFGLLTNIFAHYAFKITWHRWSRVTLPFLFISRRTYLKHFVGGVIRVLPRMLPVVFLMSFVVFFYAFIGYILYRDEPRTSSLLQDLDLFSQPSSSAMTFLRMFTSIPFMLDVEHIYAGTKGIRVMGLSYGVIMVIFLGALVPAVANRNF----QHHYNWVKEQRRLALTRAFMLLRREEDGTVGREDWVRLMACLRPDCNAGHTSALFDAAKKAD-DETVSFGGEDDR-NRLSKGGFFMLCALGTASFSRA---RKDDAGSRRSGSKWKRIRQRLDAALSWSMPGSNFPLSRQVLNVAVVVQGYQIVLEGDDPEGRPTWAYPLGGFLIAYFCVQASLRMIVDGARLYIMQWRHALGMCLNLIGVTYYMGLWFDGTGWHSFYKILQASRVVILWNVLHRLGSTSSEVARRLEFVFPAVLRASFVLFSVTYSYSVLAFDMYCATPLGVEPVDSVADHSMMQRWAYYKDVLSFASLHQSFAAMTDIVMLSNWPLFMDAAGDVGNVVTAKIFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSSRAIPHSLSFSRRSPRDGGGRGGAEDGRGGPASPLSSRVKSVLETTGASSIRTIGETGXXXXXXXXXASRST----GELGGAG-----PAASPSSSGRSYGDXXXXXXXXGAVGDMAGSRSRKATPKARTVGNDGASTILDGSQFATLAGDAVDVDTLLEQGAHGYGGSDRGGEDGNGEDCGLDDDDGSFSSDESSAPVVVTSHARSMSSTFWGAEQEKDHQRRGSLQASTEMQENLNRVEAE-------NASLRALVDSMQMDLQMANARLYDEMQTKSRDRSPSP-GRTPSRR 1122
BLAST of mRNA_P-littoralis_Contig80.5.4 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI) HSP 1 Score: 797 bits (2058), Expect = 2.090e-261 Identity = 491/1027 (47.81%), Postives = 618/1027 (60.18%), Query Frame = 1
Query: 622 SQAPETRPLLGRYVDKHEVASIYVQDALAGRDCSACIHTEESFRALKLYRSKAWVQLLNICTIIHLILPMVEIQRCLPCLGVQQLPPYLDNNALFVGWRPTSLGSMWIESVMCILYAYHLLQQGLSRLGDIPAGEKEEEENGDQEDQSRPQAEVYSLLALPPWQVARTIMVAFISVSLAGNIFSHYVFGVTWNSWRQMILPFLFISRRTYLKHFVASIIRLIPKMLPVVFLISFITFFYGFLGYIVYRDEPHSSSLLSDLQLFDSPASSALTFLRIFTARSFMLDVEKIYSGRDGVQVMTVSYGVIMFIFLLALVPAVATHNFSAESKKSYYWVKGQRKLALSRAFMLLK-QPDGTLAREDYLQLMACLRPDCDRDHTSALFSAANKVEKNQSNSLPTEDDRRNRLSKAGFFMVCALGTADFSRTQNKRMKALRSRRSRRKWARVRRRLDAALLWSRAGSTFPLSQQVLDVALLVQGYQIIKAGDDPEVRPGWVYPLGAALIAYFCIQSSLRIIAGGARAYFMEWRNTLEMSLNLIGVAFYGGLWPRGQGWHSFYQILQASRLELLWNYLHLLGPTSSEVATRLELVGPAVVRASLVLFSITYSYAVVAFAMYCSTPLGRESLESFKDDSMVKRFEAVKEVASFETLPKSFASMMYVLMFSNWPMFMDAATVMGNPFVAKVFFYSFKIFGFYFIMPVLLGSTVTAYMNVQVQPMGAGT--PAGMRSAYPSTDSLSLSK--HRSFNGAGAGDARRRGDTDAKAVRRHSSFGEDRFSGKKGAPVESEIDKAVAAALAEGGEFDGTGTGRVE----------PILDEYRAGIDYEEG-----------------------LAEESDEDGE-----DGSN------------------AVGDGASSRGRHGSYVDGASTEDELDHPVVIASR--------SRSLSQSFWAQHQASD----GGTHASTTMQGTLASLEAELTRLKTENASLRSHMDTREASVRQYVAQMHEEMQASAGD-SPSPAGQATTRR 3480
SQ PE +PL+ VDKHEVASIYV+DALAGR+ CIH + S RALKL R+KAW QLLNICTI HL+LP+VEIQRCLPC+G+Q++P LD+N+L GWRPT LGSMW+E ++C+LY Y L + L+R W ++ LPFLFISRRTYLKHFV +IR++P+MLPV FL+SF+ FFY F+GY++YRDEP SSSLL DL LF P+SSA+TFLRIFT+ FMLDVE IY+G G++VM +SYGVIM IFL ALVPAVA NF +SK+SY WVK QRKLAL+RAFMLL+ + D T+ RED+++LMACLRPDC+ HTSALF AA K E +++ SL EDDR NRLSK GFFM+CALGTA FSR R SRRS KW R+R+RLDAAL WS GS FPLS+QVL+VA++VQGYQI+ GDDPE RP W YPLG LIAYFC+Q+SL +I GAR Y +WR+ L M LNLIGVA+Y GLW G GWHSFYQILQASR+ +LWN LH LG TSSEVATRLE V PAV+RAS VLFS+TYSY+V+AF MYC+TPLG E ++S D SM++R+ K+V SF +L +SFA+M V+M SNWP+FMDAA +GN AK+FFYSFK+ FYF+MPV+LG V +YM + + PA S+ +DSLS S+ HR G G + R G + R V+S ++ A+++ GE G G G P +G Y +G A +DG DGS A GDG S G +G + +RS+S +FW Q D G + AST MQ +L+ +EAE NASLR+ +D+ + ++ A++++EMQ + D SPSP G+ +RR
Sbjct: 58 SQLPEVQPLVAYDVDKHEVASIYVKDALAGRESPTCIHDQNSLRALKLVRNKAWNQLLNICTIAHLMLPIVEIQRCLPCMGMQKIPESLDSNSLHTGWRPTLLGSMWLECLLCLLYVYDLYKVALAR-------------------------------------------------------------------WSRVTLPFLFISRRTYLKHFVGGVIRVLPRMLPVAFLMSFVVFFYAFIGYVLYRDEPRSSSLLQDLDLFSQPSSSAMTFLRIFTSIPFMLDVEHIYAGTKGIRVMGLSYGVIMVIFLGALVPAVANRNFQYQSKESYNWVKEQRKLALTRAFMLLRREEDRTVGREDWVRLMACLRPDCNAGHTSALFDAAKKAE-DETVSLGGEDDR-NRLSKGGFFMLCALGTASFSRA---RKDDAGSRRSGSKWKRIRQRLDAALSWSMPGSNFPLSRQVLNVAVVVQGYQIVLEGDDPERRPTWAYPLGGFLIAYFCVQASLWMIVDGARLYIRQWRHALGMCLNLIGVAYYMGLWFDGTGWHSFYQILQASRVVILWNVLHRLGSTSSEVATRLEFVFPAVLRASFVLFSVTYSYSVLAFDMYCATPLGVEPVDSVADHSMMQRWAYYKDVISFASLHQSFAAMTDVIMLSNWPLFMDAAGDVGNVVTAKLFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSSRAVSDSLSFSRRSHRDGGGRGGAEDGRGGSASPLSSR-----------------VKSILETTGASSIRTIGEVGGVGGGASRLTRELGGGAGPAASLSSSGRSYGDGGEGAASXXXXXXXXXXXXXXXXXXARAGGKDGASTTILDGSKFATFAGDAVDVDTLLEEGARGDGGSDSGXXXXDGEGGGLDXXXXXXXXXXXXXXXXXXXXARSMSSTFWGAEQEKDHQRRGSSQASTEMQESLSRMEAE-------NASLRALVDSMQMDLQMANARLYDEMQTPSRDRSPSP-GRTPSRR 987
BLAST of mRNA_P-littoralis_Contig80.5.4 vs. uniprot
Match: D7FGS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS1_ECTSI) HSP 1 Score: 539 bits (1389), Expect = 7.920e-169 Identity = 358/731 (48.97%), Postives = 428/731 (58.55%), Query Frame = 1
Query: 1660 MLLKQPDGTLAREDYLQLMACLRPDCDRDHTSALFSAANKVEKNQSNSLPTEDDRRNRLSKAGFFMVCALGTADFSRTQNKRMKALRS---RRSRRKWARVRRRLDAALLWSRAGSTFPLSQQVLDVALLVQGYQIIKAGDDPEVRPGWVYPLGAALIAYFCIQSSLRIIAGGARAYFMEWRNTLEMSLNLIGVAFYGGLWPRGQGWHSFYQILQASRLELLWNYLHLLGPTSSEVATRLELVGPAVVRASLVLFSITYSYAVVAFAMYCSTPLGRESLESFKDDSMVKRFEAVKEVASFETLPKSFASMMYVLMFSNWPMFMDAATVMGNPFVAKVFFYSFKIFGFYFIMPVLLGSTVTAYMNVQVQPMGAGTPA----------------------GMRSAYPSTDSLSLSKHRSFNGAGAGDARRRGDTDAKAVRRHSSFGED----RFSGKKGAPV-----ESEIDKAVAA-------ALAEGGE----FDGTGTGRVEPILDEYRAGIDYEEGLAEESDEDGEDGSNAVGDGASSRGRHGSYVDGASTEDELDH---PVVIASRSRSLSQSFWAQHQASDGGTHASTTMQGTLASLEAELTRLKTENASLRSHMDTREASVRQYVAQMHEEMQASAGDSPSP-AGQATTRRAXXXXXXXXXXXXXTTAARAGAEPPSTNTSPERRTKASLRTLAAPSTAAHTIWGMKAIFEGANDGGGGETGDGLV 3705
MLL+ DGTL R+DY+QLM CLRPDCD+DHTSALFSAA K E+ QSNS+ +D RN LSK GFFM+CALGTAD SRTQN+RMK R R+S RKWAR R RLD GYQI++AGD+PE RP W YPLGA LI YFC+Q++LR+IAGG R YF+EWRN LEMSLN++G+A+Y LWPRGQ +HSFYQILQA RLELLW LHLLGPTSS+VATRLE V PAV+RAS VLF++TY+YAVVA+AMYCSTPLG E + KDDSMVKRF AVKEVA+F TLP+S+ASMMYV+MFSNWPMFMDAA V+GN VAKVFFYSFK GFYF+MPVLLG VT+YMN V P P G + + A R K ++R SSFG++ + GK G +EID A A ALAE G+ DE +D + + D RGR +Y +STE PV++ASR+RSLSQ+FW HQA DGG +T MQG LA LE EL L+ EN SLR+ + RE S R +VA+M +E+Q D S AGQ R+ AA E P +TSPE SLR+ S+ +TIWGM+AI E + G ETG LV
Sbjct: 1 MLLRHRDGTLPRDDYVQLMMCLRPDCDKDHTSALFSAAKKAEEQQSNSVAAVEDDRNLLSKTGFFMLCALGTADISRTQNERMKMYRRSRRRKSGRKWARARARLD--------------------------GYQIVRAGDNPEGRPAWAYPLGAVLIFYFCLQAALRMIAGGVRPYFLEWRNILEMSLNMVGIAYYAQLWPRGQAFHSFYQILQALRLELLWINLHLLGPTSSDVATRLEFVFPAVIRASFVLFALTYTYAVVAYAMYCSTPLGGEPIGDLKDDSMVKRFAAVKEVANFATLPRSYASMMYVVMFSNWPMFMDAAGVVGNLVVAKVFFYSFKAIGFYFVMPVLLGFIVTSYMNAHV-PTVEDPPKPXXXXXXXXXXXXXXXXXXPLIGSKGTXXXXXXXXXXXXXXXDEEKASPLVRF----RKGLQRRSSFGDEPTRSKDRGKFGYSTLADGAHTEIDVAALAVPRGSQEALAELGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEVEDDVATELWDAGKRRGRERAYSVDSSTEXXXXXHHAPVMVASRARSLSQTFWGVHQARDGGAANTTVMQGALARLENELANLRAENESLRADLGPREVSTRLHVAEMLKEVQTPMQDGASTSAGQKPYRQ-------PSVGVGAANAAAGETESPLPSTSPEG--DGSLRSRVVGSS--NTIWGMQAILETED---GEETGQDLV 686
BLAST of mRNA_P-littoralis_Contig80.5.4 vs. uniprot
Match: D7FGS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS0_ECTSI) HSP 1 Score: 387 bits (994), Expect = 7.380e-118 Identity = 211/355 (59.44%), Postives = 250/355 (70.42%), Query Frame = 1
Query: 376 MGRTQSFTVPLVMPWASSASSTMPRTKS-SVGLFSRRQSNEEVIWSAEDVATADVATAISQDLVGKAERWKLLAWEPLGSHGASQAPETRPLLGRYVDKHEVASIYVQDALAGRDCSACIHTEESFRALKLYRSKAWVQLLNICTIIHLILPMVEIQRCLPCLGVQQLPPYLDNNALFVGWRPTSLGSMWIESVMCILYAYHLLQQGLSRLGDIPAGEKEEEENGD---------------------QEDQSRPQAEVYSLLALPPWQVARTIMVAFISVSLAGNIFSHYVFGVTWNSWRQMILPFLFISRRTYLKHFVASIIRLIPKMLPVVFLISFITFFYGFLGYIVYRDEP 1374
+G+ +SFT+PLVMP +S MPR KS S G+ RR S +E W AE++ATADVATAIS+DLV KAERWKLLA EPL A PLL VDKHEVA+ YV+DALAGRD SACIH E S RALK +R+ AW LLNICT++HLILPMVEIQRCL C+G + L++N LF+GWRPTSLGS+WIE V+C+ Y HL Q+ LSRLG IP +NG + ++ RPQAEVYSL AL PWQ+ART MV +SVSL +FSHYVFGVTW SWR +ILPFLFISRRTYLKHF+A+ IRL+P+M+PVVFLI YGF+GYIVYRDEP
Sbjct: 31 LGKARSFTIPLVMP----GNSGMPRAKSASGGVVGRRPSTDEASWDAEEIATADVATAISRDLVTKAERWKLLAEEPL------MAQSITPLLADNVDKHEVAATYVRDALAGRDSSACIHNERSIRALKWFRNDAWNSLLNICTLVHLILPMVEIQRCLSCMGPHRRSASLEDNTLFLGWRPTSLGSLWIECVLCVFYTCHLRQEALSRLGSIPV------KNGGGXXXXXXXXXXXXXXXXXXXXELERDRPQAEVYSLSALRPWQLARTCMVTVLSVSLVAKLFSHYVFGVTWFSWRHVILPFLFISRRTYLKHFLAATIRLLPRMVPVVFLIXXXXXXYGFIGYIVYRDEP 369
BLAST of mRNA_P-littoralis_Contig80.5.4 vs. uniprot
Match: A0A6H5JGA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA6_9PHAE) HSP 1 Score: 125 bits (315), Expect = 3.450e-30 Identity = 60/93 (64.52%), Postives = 72/93 (77.42%), Query Frame = 1
Query: 643 PLLGRYVDKHEVASIYVQDALAGRDCSACIHTEESFRALKLYRSKAWVQLLNICTIIHLILPMVEIQRCLPCLGVQQLPPYLDNNALFVGWRP 921
PLL VDKHEVA+IYV+DALAGRD SACIH E S RALK +R+ AW LLN+CT++HL LPMVEIQRCL C+G + L++N LF+G RP
Sbjct: 7 PLLADNVDKHEVAAIYVRDALAGRDSSACIHNERSIRALKCFRNDAWNSLLNVCTLVHLTLPMVEIQRCLSCVGPHKRSASLEDNTLFLGIRP 99
BLAST of mRNA_P-littoralis_Contig80.5.4 vs. uniprot
Match: A0A836CJB1_9STRA (Ion_trans domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJB1_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.240e-20 Identity = 117/488 (23.98%), Postives = 196/488 (40.16%), Query Frame = 1
Query: 523 ATADVATAISQDLVGKAERWKLLAWEP---LGS--HGASQAPETRPLLGR--YVDKHEVASIYVQ------------------------------------------DALAGRDCSACIHTEESFRALKLYRSKAWVQLLNICTIIHLILPMVEIQRCLPCL--GVQQLPP-----YLDNNAL--FVGWRPTSLGSMWIESVMCILYAYHLLQQGLSRLGDIPAGEKEEEENGDQEDQSRPQAEVYSLLALP-PWQVARTIMV------AFISVSLAGNIFSHYVFGVTW----------------------------------------NSWRQMILPFLFISRRTYLKHFVASIIRLIPKMLPVVFLISFITFFYGFLGYIVYRDEPHSSSLLSDLQLFDSPASSALTFLRIFTARSFMLDVEKIYSGRDGVQVMTVSYGVIMFIFLLALVPAVATHNFSAESKKSYYWVKGQRKLALSRAFMLLK 1671
A AD IS +L + RW+ LA + LGS H A R + VD++E AS Y++ DA+ GR A IHT+ A++L R++ + + N+ L+LP++E+ C V+ + LD ++L FVGWRPT LGS W+E +C + + + L + D +G N V++ + L W I++ + +L+ F G + + + + F++I+ YL+ FV + ++P+++PV +F+ YG++GY+ + L +L LF + + LT LR+FT+ F+LD+E +Y G+++ +Y ++ + L ALV AVA F +S +Y V QR ALS AF L+
Sbjct: 44 AAADAIVDISAELAERRTRWRYLAEKADWLLGSTSHARDDAAAARKCQPQDPAVDRYEAASYYIKWVRGGRVRAGSHNSSGGWADFAHCMLVPAPWEGALPPGPLSRDAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPMGWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFFLFEIAL--LFMIRDRCSGRPFYHTN------------VWATMRLACVWLQLVDILIFLWGRYTYEGTALSMEFFRRARAGCSRAPRLADAPALRSARRSGQQRSGAAAKCALKQERVAAVRKRGQYSRALTFFIYITNHQYLRLFVKGLWHVLPRLMPVATAAAFVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFVLDLEFLYRRSPGIRIYCATYALLAAVLLCALVTAVANKLFQQQSLDAYRLVIRQRARALSMAFDCLR 517 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig80.5.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig80.5.4 >prot_P-littoralis_Contig80.5.4 ID=prot_P-littoralis_Contig80.5.4|Name=mRNA_P-littoralis_Contig80.5.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1164bp MERDELLPSPSNTYGSGGSNDATGRRGTIPSSQGIYSTPPSASNAWISRGback to top mRNA from alignment at P-littoralis_Contig80:46412..86732- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig80.5.4 ID=mRNA_P-littoralis_Contig80.5.4|Name=mRNA_P-littoralis_Contig80.5.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=40321bp|location=Sequence derived from alignment at P-littoralis_Contig80:46412..86732- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig80:46412..86732- >mRNA_P-littoralis_Contig80.5.4 ID=mRNA_P-littoralis_Contig80.5.4|Name=mRNA_P-littoralis_Contig80.5.4|organism=Pylaiella littoralis U1_48|type=CDS|length=3492bp|location=Sequence derived from alignment at P-littoralis_Contig80:46412..86732- (Pylaiella littoralis U1_48)back to top |