mRNA_P-littoralis_Contig8.65.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.65.2
Unique NamemRNA_P-littoralis_Contig8.65.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig8.65.2 vs. uniprot
Match: D8LB57_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB57_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.880e-52
Identity = 110/150 (73.33%), Postives = 118/150 (78.67%), Query Frame = 2 
Query:   80 IAKCAVAVATLFSGASAFSCP--------SPLAGARQSRYTTMAAA---GPGARGEST-ELPTSRKDVLGAVFGAVGVSSFAFMAAADAKDDPALKGTKADPEFVTCLSDCIYYCTKSKEQSRSRQECIPEXRQTXAKTKAQGMIGAPRT 493
            +AK AV VATL  G SAFS P        + +AGAR S    MAA    GPG+   S  ELPTSRKDVLGAVFGA  +SSFAF++AADAKDDPALKGTKADPEFVTCLSDCIY+CTKSKEQSRSRQECIPEX QTXAKTKAQGMIGAPRT
Sbjct:    6 VAKGAVVVATLACGGSAFSIPPSSAASAAAGVAGARPSSRHVMAAEAAPGPGSSDYSAAELPTSRKDVLGAVFGAAAMSSFAFVSAADAKDDPALKGTKADPEFVTCLSDCIYFCTKSKEQSRSRQECIPEXXQTXAKTKAQGMIGAPRT 155
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BLAST of mRNA_P-littoralis_Contig8.65.2 vs. uniprot
Match: A0A836CLN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.490e-15
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 2 
Query:  233 SRKDVLGAVFGAVGVSSFAFMAAADAKDDPALKGTKADPEFVTCLSDCIYYCTKSK-EQSRSRQECIPEXRQTXAKTKAQGMIGAPR 490
            SR+DV   +  A  V++  F  AA AKDDP+  GTK DP+F  C+S CIY CTK K   +RSR EC+PE ++  A TKAQ M G P+
Sbjct:   41 SRRDVFAGI--ASSVAAVGFAGAAVAKDDPSKVGTKDDPKFQACISQCIYECTKPKGSMTRSRGECLPECKKNCATTKAQAMTGVPK 125
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BLAST of mRNA_P-littoralis_Contig8.65.2 vs. uniprot
Match: A0A7S3QJL1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJL1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.010e-13
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 2 
Query:  215 STELPTSRKDVLGAVFGAVGVSSFAFMAAADAKD-DPALKGTKADPEFVTCLSDCIYYCTKSK-EQSRSRQECIPEXRQTXAKTKAQGMIGAP 487
            +T  P +R   L + F A G+   A + ++ AKD DPALKGTK DP +  CLS CI+ CTK K ++ +SR ECIPE +   A +K Q MIG P
Sbjct:   23 NTNTPLNRVSFLKSSFAAAGLVLTADVNSSVAKDIDPALKGTKNDPAYQACLSQCIFECTKPKGDEQKSRSECIPECKTKCATSKQQLMIGTP 115
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BLAST of mRNA_P-littoralis_Contig8.65.2 vs. uniprot
Match: A0A7S2GTD3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GTD3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.670e-12
Identity = 49/108 (45.37%), Postives = 66/108 (61.11%), Query Frame = 2 
Query:  179 TMAAAGPGARGEST--ELPTSRKDVL--GAVFGAVGVSSFAFMAAADAKDDPALKGTKADPEFVTCLSDCIYYCTKSK-EQSRSRQECIPEXRQTXAKTKAQGMIGAP 487
            +M++  P + G +T  E P+SRK  L   A      V+S AF A    + DPA+KGTKADP +  C+S C+Y CTK K ++ +SRQECIPE ++  A  K Q MIG P
Sbjct:   23 SMSSTSPKSNGINTIPEQPSSRKAFLQSSAALLPFVVASPAFAAK---EVDPAVKGTKADPAYQNCVSQCLYDCTKPKGDEQKSRQECIPECKKQCATDKQQLMIGTP 127
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BLAST of mRNA_P-littoralis_Contig8.65.2 vs. uniprot
Match: A0A1Z5JPE7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPE7_FISSO)

HSP 1 Score: 70.9 bits (172), Expect = 2.180e-11
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 2 
Query:  212 ESTELPTSRKDVLGAVFGAVGVSSFAFMAAADAKDDPALKGTKADPEFVTCLSDCIYYCTKSK-EQSRSRQECIPEXRQTXAKTKAQGMIGAPR 490
            ++  L  +R   L  V GA   ++ A  A A  + DPA+KGTK DP +  CLS C+Y CTK K  + +SRQEC+  X    AKTKAQ M+G P+
Sbjct:   17 QAWSLSGTRAQFLQHVLGAAATATIALPAYAK-EVDPAIKGTKKDPNYEKCLSVCMYDCTKPKGSEQKSRQECLXXXXXKCAKTKAQLMLGTPK 109
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BLAST of mRNA_P-littoralis_Contig8.65.2 vs. uniprot
Match: A0A6U3ZBC6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZBC6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.810e-11
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 2 
Query:  317 DPALKGTKADPEFVTCLSDCIYYCTKSK-EQSRSRQECIPEXRQTXAKTKAQGMIGAP 487
            DP++KGTKADP +  C+S C+Y CTK K ++ +SRQECIPE ++  A  K Q MIG+P
Sbjct:   71 DPSVKGTKADPAYQACVSQCLYDCTKPKGDEQKSRQECIPECKKQCATDKKQLMIGSP 128
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BLAST of mRNA_P-littoralis_Contig8.65.2 vs. uniprot
Match: K0SIG8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SIG8_THAOC)

HSP 1 Score: 72.8 bits (177), Expect = 6.130e-11
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 2 
Query:  317 DPALKGTKADPEFVTCLSDCIYYCTKSKE-QSRSRQECIPEXRQTXAKTKAQGMIGAPR 490
            DPALKGTKADPE+ +CLS CIY CTK K  + ++R EC+PE +   A TK Q + GAP+
Sbjct:   68 DPALKGTKADPEYQSCLSTCIYECTKPKGVEQKTRAECLPECKSKCATTKQQLLTGAPK 126
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BLAST of mRNA_P-littoralis_Contig8.65.2 vs. uniprot
Match: A0A7S2XYH9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYH9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.920e-9
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:  326 LKGTKADPEFVTCLSDCIYYCTKSK-EQSRSRQECIPEXRQTXAKTKAQGMIGAP 487
            L GTK DP F  CLS CIY+CTK K  ++R R EC+PE ++  A TK QG++G P
Sbjct:  125 LIGTKDDPTFKNCLSQCIYFCTKPKGTETRERSECLPECKKQCATTKEQGLVGKP 179
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BLAST of mRNA_P-littoralis_Contig8.65.2 vs. uniprot
Match: B8CG77_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG77_THAPS)

HSP 1 Score: 55.5 bits (132), Expect = 8.630e-6
Identity = 40/80 (50.00%), Postives = 49/80 (61.25%), Query Frame = 2 
Query:  176 TTMAAAGPGARGESTELPTSRKDVLGAVFGAVGVSS-FAFMAA---ADAKD-DPALKGTKADPEFVTCLSDCIYYCTKSK 400
            TT A + P +  +S +  TS   V  + F A   S+  AF+A+   A AKD DPALKGTKADPEF  CLS C+Y CTK K
Sbjct:   17 TTAAYSTPKSTSQS-QRQTSATVVNRSTFLATAASTCLAFLASSPPAFAKDVDPALKGTKADPEFQACLSQCVYECTKPK 95
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.65.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LB57_ECTSI1.880e-5273.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLN5_9STRA1.490e-1550.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3QJL1_9STRA1.010e-1347.31Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2GTD3_9STRA1.670e-1245.37Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1Z5JPE7_FISSO2.180e-1144.68Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A6U3ZBC6_9STRA2.810e-1155.17Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0SIG8_THAOC6.130e-1157.63Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2XYH9_9STRA1.920e-954.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B8CG77_THAPS8.630e-650.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:321023..324422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB57
Model size1449
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons4
Evalue3.44e-58
EggNOG OGs2E95B@1|root,2SFIZ@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_005130.1
Cds size429
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.65.2prot_P-littoralis_Contig8.65.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 321976..324355 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791634.3951883-UTR-P-littoralis_Contig8:321022..3219751680791634.3951883-UTR-P-littoralis_Contig8:321022..321975Pylaiella littoralis U1_48UTRP-littoralis_Contig8 321023..321975 -
1680791634.4800682-UTR-P-littoralis_Contig8:324355..3244221680791634.4800682-UTR-P-littoralis_Contig8:324355..324422Pylaiella littoralis U1_48UTRP-littoralis_Contig8 324356..324422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791634.4139118-CDS-P-littoralis_Contig8:321975..3220981680791634.4139118-CDS-P-littoralis_Contig8:321975..322098Pylaiella littoralis U1_48CDSP-littoralis_Contig8 321976..322098 -
1680791634.4293332-CDS-P-littoralis_Contig8:322795..3228551680791634.4293332-CDS-P-littoralis_Contig8:322795..322855Pylaiella littoralis U1_48CDSP-littoralis_Contig8 322796..322855 -
1680791634.449837-CDS-P-littoralis_Contig8:323606..3238301680791634.449837-CDS-P-littoralis_Contig8:323606..323830Pylaiella littoralis U1_48CDSP-littoralis_Contig8 323607..323830 -
1680791634.4635568-CDS-P-littoralis_Contig8:324333..3243551680791634.4635568-CDS-P-littoralis_Contig8:324333..324355Pylaiella littoralis U1_48CDSP-littoralis_Contig8 324334..324355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.65.2

>prot_P-littoralis_Contig8.65.2 ID=prot_P-littoralis_Contig8.65.2|Name=mRNA_P-littoralis_Contig8.65.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
MISMIAKCAVAVATLFSGASAFSCPSPLAGARQSRYTTMAAAGPGARGES
TELPTSRKDVLGAVFGAVGVSSFAFMAAADAKDDPALKGTKADPEFVTCL
SDCIYYCTKSKEQSRSRQECIPECRQTCAKTKAQGMIGAPRT*
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mRNA from alignment at P-littoralis_Contig8:321023..324422-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.65.2 ID=mRNA_P-littoralis_Contig8.65.2|Name=mRNA_P-littoralis_Contig8.65.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3400bp|location=Sequence derived from alignment at P-littoralis_Contig8:321023..324422- (Pylaiella littoralis U1_48)
TTTCGACTCTATCATTCTCTCGCCCATCACCGGCACCCAGCACCCATTCA
AGCAGCTGTACGGCACGATGATTTCCATGATTGCCAAATGTGAGTCGTGT
CGCACCAGCATGTTTTATCCCGCAAGCCGAGAATGAAAAATTGACGATGG
ATTGCATTTCCGGTACGATGATGACGATCGCGCCACCTGCCACGCGCACC
TAGCTGCAGCAGCAGCAGCAGCAGCAGCTCAGTGGACTAGACGCAACCGC
CGGCACTGGCTTCTCGTCTTTACACCCGGTGTTCTCTTCGTGGTTTGCTG
TATATGTATGACAGAGAGAAGCAGAGAGGTGGGCGCAAATGTTGCTTCGT
AGAAATGTAAGGGATGGACATGATATTGTCATGTTTAGAATATGTTGGTT
ACATATAAGACTTCTGATGACACAGCACCTGTAGCACATGATAGTAGCCG
TATTCCATCGGATTTCGTTGTTCTTACATAAGGGGAGAGCCCGAATTGCT
GTATGCACTGTGGGGTTCTTGTTTCTCTCGTAGTAGGGCTTGAGTTCAGT
TGATGACTCTGTCGCTTGTACCGCGCTGCTCTCACCTTGAAGGTGCGGTG
GCGGTGGCTACACTCTTCAGTGGAGCATCAGCATTTTCTTGTCCATCGCC
GTTGGCCGGGGCACGACAATCGCGATACACCACGATGGCAGCAGCAGGTC
CGGGGGCGAGGGGAGAATCAACGGAGTTGCCCACGTCTCGAAAGGACGTG
CTGGGCGCCGTTTTCGGAGCAGTGGGGGTGTCTTCGTTTGCGTTCATGGC
TGCCGCTGACGCCAAGGTCGGTGTGACTGTGTGTATGTGTGCGTGCACTT
GTGACACGTTTACGGTGGTATCACACGGCAGTACCTGTATGTATGCGGCA
CCTGCCTGAGCAGAGTCACAGCCAGAATGGACCGTTACACGAGCTCGGCG
ATCGTGTTCTCTGTACTTGTATACTTCGAAGCATATGTTTCAGTCGGGGC
GTCTTGTTATCGCTTGTTTATTGTTTGTTGTCCAGTCTTGTTGGACGTGT
AATTGATCATGTTCGTTGAAGTGCAGAAGTGCTCTCAACATGTGTGAATG
GACGAAAACGCTGAGACGTTTAAGGTTTGTTGTTCAGCGACGACCTACAC
AGCAGTAGGTAAGACCTGCAGTTGTTGCTGTGGAAGGGCCCGCGGCACCT
CGTAAAAGGTGAAACACATGATTTTCAGGAGACGTTATAGGTCGAGAATT
TCCTCGAACGCCCTAAAAAAGAACATTTTTTCTTGCGAGAAAAAAAAACC
TCTTTCACGAAGGTCTTCCATCTGATATCACGGACCGACGCACCAACTCT
CCTTGCTACATACTTCGTTTTCGAAGCACGTAGCAACACTTGGTAAATGA
TTGCTGAACCAATCTGCAAACAGTCAACAAACTCTGTATTCAGTGGGGTC
TGTCCGTACAGAGTTGCGGTTGTTCTTGGTTTCCAGAGATGGTATGCACC
CCACCCACCCGCCCACCCATTCATCCCATGTGCTTCATGTTGCGTGCGTC
CCCCCCCCTGGCCTCAGGACGACCCGGCGCTGAAGGGCACCAAGGCGGAT
CCCGAGTTCGTAACGTGCCTCAGCGACGTAAGCGAGAACACATTGGTCAA
CTAGTAACACATCATAGTACGCTTTATGTCGAGTTTTTTCCGTAGATGGG
TCTGTGACGGAGGGGTGGGCCAGTGCTGTGGTAGTGTACACAAAGGAAGC
TAGAGGAGGGCTTTCTCCTGTCTGGTCCCATGGGCCGCAGCACTTTCCTG
CCACGCGAAAATAAAGCTTATTTGAGCTTTCATGGGACAGGAAAGGGAAG
GCGGTGCCCCGCACGGGTTTGAAAAATGCCCCGCACGGGTTTGAAAAAAA
AAAGAGTGCCGTAAATCCTGACTGCTCGAGTATTAGAAGTGATTCTAGTC
GGCGGTAGGGATAGGACAGGTGCTCCGTCTAGTGTGAGATGCATTGTCAA
TGGTACAAAGATCAAAATATCAAGGAGAGCCGCATACGCCCCCCCCCCCC
CCCTCTTCCTCTGTCTTTTTTGGAAAGGAGCACGTAGCCGACGTTAAAAT
GACTCGGAAAATCAATTTTGCTGTTGGGTGCGCCCCCTTAAAACACCCAC
CCCTTCGTCGATTTGTGCGCCACATCAATCGTGCTCTACTGTATTATACT
TCGAGCACACTTCGCTGCTGTTTTTGAGACACATGACTGACCACCATCCA
ATCAGCATTTCCGTGCGTACTCCCCCCGGTCGCTTCCTTTGTGTTTCATT
TTGCCCTTGGATCTATTCTCGCAGTGCATCTACTACTGCACAAAGTCCAA
GGAGCAATCGCGGTCAAGGCAAGAGTGTATCCCGGAGTGCCGTCAAACCT
GCGCCAAGACGAAGGCGCAGGGCATGATCGGGGCTCCCCGCACGTAAAAA
AAAATAGAAAAAAAATCGAATTCTAGAATACAAAGAGAGGCACCAATAGG
AACGCTGCCTGCGGGCACCCGTGTCTCTCGTTTTTTTTTCCACATTTCCC
ATTTGCGGGGTAGATTTTTGTTCATGTTTTTTGCCCTACATGCATCTGCA
AACACGCCGCTGAAAAAAAGCCGACATCGGTGGAGGGGCGGGGGTGGCTT
TTTCTAAACCGTAACCCCTGTCATTGGTCTACCATTGGTAAATAAATGCG
GGCGCGGTTGCCGACAGGGCCATCCAAACACGTTCCATCCCCCCGGCATC
AAATGCCGCACGTGGTGAAAAGAAAAAGACACACGCAAACCGCCACCACT
TTTGACGATTTCTTGGCGCTCATCTTCATGAGAGGGTAAGCTTGCTTGTT
GAATGTATATACATACGAATACGTGGTCGGCGTTGAAAGAATTTATTTGC
TCGAAGCTCATCCGTGGACGCGCGCATGGTGAGTGCATCTTCGGGCTTTG
GCCCGCTCACTGTGTTGCGTGCGGCGCTAGCGAGTGTCAAAATCTCGCCA
TCCGAGGGAGAGAGTAACCTCCGTACGTATGGCGTTAGTGTCACATGAGG
GGAACACCTTTGCTGTGACAAGGACCTGTTTTCTTCTCTGCACGACGGGG
AAGTGTTGCTGTTTATCCGTGTGACTTTCGAGGGCTGACTGGGGCCTAGG
GTGTGGAAGCGATTCCTTTGCCCCATGTGGCGGGGGCTCCGTTTTTAACC
TGTTGCGTCTATGCTGCCGCCGCTGCCGCTGCTACTGCGGGCGGCCGATG
CTGCGTTGTTGCCATGACGGGGTACATCGCATATCATGAGAGAGATTTTT
TGTAGTGTGATGATGTTTTGCTGCATCGCTAGAGATGTACGTAAATCAAA
GCGCGTGGTTGGTTGGTTGTTTGCTGTGTTGCCGGGTTGGTTCAGATCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:321023..324422-

>mRNA_P-littoralis_Contig8.65.2 ID=mRNA_P-littoralis_Contig8.65.2|Name=mRNA_P-littoralis_Contig8.65.2|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig8:321023..324422- (Pylaiella littoralis U1_48)
ATGATTTCCATGATTGCCAAATGTGCGGTGGCGGTGGCTACACTCTTCAG
TGGAGCATCAGCATTTTCTTGTCCATCGCCGTTGGCCGGGGCACGACAAT
CGCGATACACCACGATGGCAGCAGCAGGTCCGGGGGCGAGGGGAGAATCA
ACGGAGTTGCCCACGTCTCGAAAGGACGTGCTGGGCGCCGTTTTCGGAGC
AGTGGGGGTGTCTTCGTTTGCGTTCATGGCTGCCGCTGACGCCAAGGACG
ACCCGGCGCTGAAGGGCACCAAGGCGGATCCCGAGTTCGTAACGTGCCTC
AGCGACTGCATCTACTACTGCACAAAGTCCAAGGAGCAATCGCGGTCAAG
GCAAGAGTGTATCCCGGAGTGCCGTCAAACCTGCGCCAAGACGAAGGCGC
AGGGCATGATCGGGGCTCCCCGCACGTAA
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