mRNA_P-littoralis_Contig8.290.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.290.1
Unique NamemRNA_P-littoralis_Contig8.290.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:1233005..1233342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size338
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791631.3270166-CDS-P-littoralis_Contig8:1233004..12333161680791631.3270166-CDS-P-littoralis_Contig8:1233004..1233316Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1233005..1233316 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791631.3383422-UTR-P-littoralis_Contig8:1233316..12333421680791631.3383422-UTR-P-littoralis_Contig8:1233316..1233342Pylaiella littoralis U1_48UTRP-littoralis_Contig8 1233317..1233342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.290.1prot_P-littoralis_Contig8.290.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 1233005..1233316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.290.1

>prot_P-littoralis_Contig8.290.1 ID=prot_P-littoralis_Contig8.290.1|Name=mRNA_P-littoralis_Contig8.290.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
KEGWEASAKRADEWYDRVDEGARRFTDEWLKKEGDLSETRRRKRERDAAE
RQALTKRGRTDGGGKREEEYGGHKGSGVVGLELHSTRRSSPMPSYGVAGV
ENL*
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mRNA from alignment at P-littoralis_Contig8:1233005..1233342+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.290.1 ID=mRNA_P-littoralis_Contig8.290.1|Name=mRNA_P-littoralis_Contig8.290.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=338bp|location=Sequence derived from alignment at P-littoralis_Contig8:1233005..1233342+ (Pylaiella littoralis U1_48)
AAGGAGGGGTGGGAGGCAAGTGCCAAGAGAGCTGACGAGTGGTACGACAG
GGTCGACGAGGGTGCGCGGCGGTTCACGGACGAGTGGCTCAAGAAAGAGG
GAGACCTATCAGAGACACGTCGACGGAAAAGAGAGAGGGACGCGGCTGAG
AGGCAGGCCTTGACTAAAAGAGGGAGAACGGATGGCGGGGGTAAACGAGA
GGAGGAGTACGGGGGGCACAAGGGCAGCGGGGTAGTGGGGTTGGAGTTGC
ACAGCACAAGAAGAAGCAGTCCAATGCCAAGCTACGGGGTGGCCGGAGTG
GAAAACCTGTAGGGCGGAGTGGTGGTGTAGCTGCTGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:1233005..1233342+

>mRNA_P-littoralis_Contig8.290.1 ID=mRNA_P-littoralis_Contig8.290.1|Name=mRNA_P-littoralis_Contig8.290.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig8:1233005..1233342+ (Pylaiella littoralis U1_48)
AAGGAGGGGTGGGAGGCAAGTGCCAAGAGAGCTGACGAGTGGTACGACAG
GGTCGACGAGGGTGCGCGGCGGTTCACGGACGAGTGGCTCAAGAAAGAGG
GAGACCTATCAGAGACACGTCGACGGAAAAGAGAGAGGGACGCGGCTGAG
AGGCAGGCCTTGACTAAAAGAGGGAGAACGGATGGCGGGGGTAAACGAGA
GGAGGAGTACGGGGGGCACAAGGGCAGCGGGGTAGTGGGGTTGGAGTTGC
ACAGCACAAGAAGAAGCAGTCCAATGCCAAGCTACGGGGTGGCCGGAGTG
GAAAACCTGTAG
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