mRNA_P-littoralis_Contig8.250.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.250.1
Unique NamemRNA_P-littoralis_Contig8.250.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:1057980..1061399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1620
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-17_001620.1
Cds size1620
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.250.1prot_P-littoralis_Contig8.250.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 1057980..1061399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791642.917956-CDS-P-littoralis_Contig8:1057979..10581861680791642.917956-CDS-P-littoralis_Contig8:1057979..1058186Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1057980..1058186 -
1680791642.932287-CDS-P-littoralis_Contig8:1058646..10590961680791642.932287-CDS-P-littoralis_Contig8:1058646..1059096Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1058647..1059096 -
1680791642.9447327-CDS-P-littoralis_Contig8:1059218..10594551680791642.9447327-CDS-P-littoralis_Contig8:1059218..1059455Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1059219..1059455 -
1680791642.958942-CDS-P-littoralis_Contig8:1059752..10598991680791642.958942-CDS-P-littoralis_Contig8:1059752..1059899Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1059753..1059899 -
1680791642.9726264-CDS-P-littoralis_Contig8:1060550..10606941680791642.9726264-CDS-P-littoralis_Contig8:1060550..1060694Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1060551..1060694 -
1680791642.9819953-CDS-P-littoralis_Contig8:1060964..10613991680791642.9819953-CDS-P-littoralis_Contig8:1060964..1061399Pylaiella littoralis U1_48CDSP-littoralis_Contig8 1060965..1061399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.250.1

>prot_P-littoralis_Contig8.250.1 ID=prot_P-littoralis_Contig8.250.1|Name=mRNA_P-littoralis_Contig8.250.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=540bp
MRSRPVSAGKSLSTAPPTSAHPKSRIEQALLHKIGLLADHHAKNVQALHA
LRSTSTPPTAWAGVADPPPPYESVSPGQTRKRVPNDEYKMNDGRSTCQPP
SRVFTRVVTCSNRSPLRNKPTVVEPFPGMETHATAWKRKMRQYEELDFQA
KRDEEESKCRDRERFIAAINSVGEFSGVIARSNEMMERRRQKMIEAEEKE
EEVRRSHEFKAMPLHIADEDWQTIQNRQTVRRNQRIQMRKELMSSISHLP
RRMAMHALTRKAAAADTADTADRREKTKIKVRPRRRSVSPEQIREVLSRR
QRLWDQKLLSAKRKKKPVVPQVLPMEEREKVYRQRAQERAQERAKRENDK
SSWASQALEEATKRRIEKETSSAQTPVIPRTTQKCLMKTAQVQARRKQER
YDIEREEREEKTRHARQQEVGRALAEVIKRIDRQQGRLARRQIDKEVRKK
AREDHERYRRALKDNQIKLEQATHDAPTLWERHDAEVRKEEAKRIALSTI
ADRVFGAASTSADKKNWRGRAAEKIFDEEERAVISLSSY*
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mRNA from alignment at P-littoralis_Contig8:1057980..1061399-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.250.1 ID=mRNA_P-littoralis_Contig8.250.1|Name=mRNA_P-littoralis_Contig8.250.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3420bp|location=Sequence derived from alignment at P-littoralis_Contig8:1057980..1061399- (Pylaiella littoralis U1_48)
ATGCGTTCTCGCCCTGTATCCGCCGGAAAAAGCCTTTCGACGGCCCCGCC
TACATCGGCACACCCTAAATCTAGAATAGAGCAAGCGCTGCTTCACAAGA
TTGGCCTCCTTGCTGACCACCATGCAAAAAATGTCCAAGCTCTTCACGCG
TTGAGGAGTACTAGCACCCCACCCACGGCTTGGGCAGGTGTTGCCGATCC
ACCCCCACCCTATGAATCAGTCAGCCCTGGCCAAACTAGGAAAAGAGTAC
CGAATGACGAGTATAAGATGAATGATGGACGTTCAACTTGTCAGCCACCC
AGCCGTGTCTTCACGCGGGTCGTTACTTGTTCTAATCGGAGCCCGTTGAG
GAACAAGCCGACGGTGGTCGAGCCATTCCCCGGTATGGAAACTCACGCAA
CCGCCTGGAAACGGAAAATGAGGCAATATGAAGAGGTGGGCCCTAAATAT
GTTTCAGGACATCCAGGTCGACAGATCAACAACTTTCACTTCAATGCTTT
GCGTCGGATCATGCGCACATAATTTTCAACTTAGCGTCATCAGAAATTTT
CCTATGTTAGGGACCGAGAAGATTTACACCACCATGGCCGAAATATTGGA
ATCAAATATACTGCAACCTTCATCGCTGTGTATGGTGACGATGGCTAGCT
GAACTCCACCGGTTATTCTTCGTTGGCCCGACCCCGCCTTCTGTCAAAAC
CGTAGCTTGACTTTCAAGCAAAGAGAGACGAGGAGGAATCAAAGTGTAGG
GACCGCGAGCGTTTTATTGCAGCCATCAACAGTGTCGGGGAATTTTCTGG
CGTAATTGCTCGATCAAACGAGATGATGGAGCGACGCCGACAAAAGATGG
TGAGTTATAGAGCTCTGTCCAGGTGCCAAAAGTAAGCTTTGATATGTACG
TAGAGGGTAGCAGGTGAGCAAAACTTTGAGCAGCGGCAATTCCAAGATGG
TCAGCGACCTACAATATGACGACAACCTGGTCGTGCGAGGTACAATCTTG
AAGTTCCGAAACCGGCCTGGTTTCGAATACCGGATAGTAAAGAGGTGTTT
TGAAGTCAAATCTTGTATCACACGCGACATGAACGGAAGCCGTTTAAAAC
TTTCAATGTGCTGGACGCAACAAAAAATGCGTTTCACCCCCCAATAACTA
AAAGCGTTAACGAAGGCAGCACAAGTAAATCATTTCCAAACGAAGAGTCT
TGTCGAATCCATTTCATCAGCTGGAGCGTAGTTTCGTGCCCAGAAAATAC
AGTTTGCTACGGGCATTAGCTCACTCTGCATGCCAGGAGCGTTTAGCGTG
CGATGGGACCTTGGTGTCCACACGTATCCGATTTTGTGTGATACAAAATC
ACCCTGCCACTTTTGTTACTGCTGCTACTAAACTATGTGAGAGACCAATA
TTGACCTCGATTTTGACAGTTTTGTACACATGTTTTGTAGCTCCTCCTCC
TGAACATCGCCAACAAGTGCCTTGTGGCGGGGCTTCGCATGCGAAACCAG
ATAGAAGCCGAGGAAAAAGAGGAGGAAGTCAGAAGAAGTCACGAGTTCAA
GGCAATGCCTCTTCACATCGCCGATGAAGACTGGCAAACAATTCAGAACA
GGCAAACCGTGAGGCGGAATCAGAGGATCCAGATGCGAAAAGAGCTGGTG
AGCGGCCGTGTCGACCATTCCGGCTGAACGGTGTTCATGGCACGAGTGAG
GCCTCCAATGCACTGTGCGGCTGGCGTTCAATCAAGCATTTGCGTGGTGT
TGGTGGTTACCATTGGTGTCGCCCGTGAAGCCGATGTATCGACAAACATG
GTGTTTTCCGCTGTGTCGCCTTCCTCGTGAAAATAGGGGTCACTTCCCAC
CAGAATACACGCTTGCGGCTGAAGAACACAGCATTTCGTATTCGTGAGAT
AATCAATACCCAACGGCGCTGCATGTTGTTGTCAACCTTGACAGATGTCT
TCTATCTCGCACCTACCAAGGCGCATGGCCATGCATGCACTAACACGAAA
GGCTGCGGCAGCTGACACAGCCGACACCGCTGACAGGCGAGAAAAAACAA
AAATTAAAGTTCGCCCGAGACGTAGATCTGTTTCACCGGAACAGATCCGA
GAAGTATTATCCAGGAGGCAGCGGCTATGGGACCAGAAGCTTTTGTCGGC
TAAACGGAAAAAGAAACCGGTGGTGCCTCAGGTGTGAACTCACCACGCCG
TTACATGTAGCACGAGGGCTGGCATCTAGTAGCCTTGGCACTGCCACCAC
GCTGGAGCTAACATGGTTCAACTGGCGTGCCAATCATCGCCCCTTTATTT
TAGGTTTTACCCATGGAAGAGAGAGAAAAAGTGTACCGGCAACGAGCGCA
AGAGCGAGCGCAAGAGCGCGCCAAACGGGAGAACGACAAATCTTCCTGGG
CAAGCCAGGCGTTGGAGGAGGCAACCAAGCGAAGAATTGAAAAGGAAACA
TCATCAGCGCAAACGCCGGTTATCCCTCGCACAACCCAAAAGTGTCTTAT
GAAGACTGCACAGGTGCAAGCCAGGCGAAAACAAGAGAGGTATGATATCG
AACGAGAAGAGCGCGAGGAGAAGACACGGCATGCACGACAGCAAGAGGTT
GGAAGGGCTCTCGCCGAAGTGATAAAACGAATAGATCGCCAGCAAGGAAG
ACTAGCGCGGCGACAGATCGACAAAGAGGTCCGAAAAAAGGCTCGGGAAG
ATCATGAAAGATACCGCCGAGCATTGAAAGACAATCAAATTAAGCTGGAA
CAGGTGCGTACGTATCGTCGAGACGTATGTACCAATATTCAGTTGCTTCG
CCGTAGTTTTTCGTATGTCCTTTACTCGCAGATGTGAACCGAGCTCAGGC
GTGCTACATTCTAGTCTAGGTGCGGACTTCAAAACAACGAGTTTCCTCCA
TACGCGTATGTAAGTAGAGTATGACCCATATGGCTTGCATGAGTGCTCGT
ACCGGTCATTGCCTCATAACTGTCGTTTCGGAATGTTTCGGATACAACGC
TCAATACGCAAACAATGAAGTTAAGTCGTGGCCTTCGGGGAAGGAATATC
CATCATTCGCTCCATCGTATTCCCCGACTGATCCACGTTGGTGTCTGCCT
TTCGTCGTTCACCATTCGCCAGAGGTGGTTCAGAACGTGAAAAAGGTTAT
TGTGACAGAACAGCTCAGTCCTCAAACGTACGGGCACCACAACCGGTTAT
TTCTGCCACGCAGGCCACCCATGACGCGCCTACGCTGTGGGAGAGGCACG
ACGCAGAGGTGCGTAAGGAGGAAGCAAAGCGAATTGCATTGTCGACCATC
GCAGATAGAGTGTTTGGGGCTGCATCGACGAGTGCAGACAAGAAAAACTG
GAGGGGCCGTGCTGCCGAGAAAATATTTGACGAGGAAGAGCGAGCAGTAA
TAAGCCTGTCGTCTTACTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:1057980..1061399-

>mRNA_P-littoralis_Contig8.250.1 ID=mRNA_P-littoralis_Contig8.250.1|Name=mRNA_P-littoralis_Contig8.250.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1620bp|location=Sequence derived from alignment at P-littoralis_Contig8:1057980..1061399- (Pylaiella littoralis U1_48)
ATGCGTTCTCGCCCTGTATCCGCCGGAAAAAGCCTTTCGACGGCCCCGCC
TACATCGGCACACCCTAAATCTAGAATAGAGCAAGCGCTGCTTCACAAGA
TTGGCCTCCTTGCTGACCACCATGCAAAAAATGTCCAAGCTCTTCACGCG
TTGAGGAGTACTAGCACCCCACCCACGGCTTGGGCAGGTGTTGCCGATCC
ACCCCCACCCTATGAATCAGTCAGCCCTGGCCAAACTAGGAAAAGAGTAC
CGAATGACGAGTATAAGATGAATGATGGACGTTCAACTTGTCAGCCACCC
AGCCGTGTCTTCACGCGGGTCGTTACTTGTTCTAATCGGAGCCCGTTGAG
GAACAAGCCGACGGTGGTCGAGCCATTCCCCGGTATGGAAACTCACGCAA
CCGCCTGGAAACGGAAAATGAGGCAATATGAAGAGCTTGACTTTCAAGCA
AAGAGAGACGAGGAGGAATCAAAGTGTAGGGACCGCGAGCGTTTTATTGC
AGCCATCAACAGTGTCGGGGAATTTTCTGGCGTAATTGCTCGATCAAACG
AGATGATGGAGCGACGCCGACAAAAGATGATAGAAGCCGAGGAAAAAGAG
GAGGAAGTCAGAAGAAGTCACGAGTTCAAGGCAATGCCTCTTCACATCGC
CGATGAAGACTGGCAAACAATTCAGAACAGGCAAACCGTGAGGCGGAATC
AGAGGATCCAGATGCGAAAAGAGCTGATGTCTTCTATCTCGCACCTACCA
AGGCGCATGGCCATGCATGCACTAACACGAAAGGCTGCGGCAGCTGACAC
AGCCGACACCGCTGACAGGCGAGAAAAAACAAAAATTAAAGTTCGCCCGA
GACGTAGATCTGTTTCACCGGAACAGATCCGAGAAGTATTATCCAGGAGG
CAGCGGCTATGGGACCAGAAGCTTTTGTCGGCTAAACGGAAAAAGAAACC
GGTGGTGCCTCAGGTTTTACCCATGGAAGAGAGAGAAAAAGTGTACCGGC
AACGAGCGCAAGAGCGAGCGCAAGAGCGCGCCAAACGGGAGAACGACAAA
TCTTCCTGGGCAAGCCAGGCGTTGGAGGAGGCAACCAAGCGAAGAATTGA
AAAGGAAACATCATCAGCGCAAACGCCGGTTATCCCTCGCACAACCCAAA
AGTGTCTTATGAAGACTGCACAGGTGCAAGCCAGGCGAAAACAAGAGAGG
TATGATATCGAACGAGAAGAGCGCGAGGAGAAGACACGGCATGCACGACA
GCAAGAGGTTGGAAGGGCTCTCGCCGAAGTGATAAAACGAATAGATCGCC
AGCAAGGAAGACTAGCGCGGCGACAGATCGACAAAGAGGTCCGAAAAAAG
GCTCGGGAAGATCATGAAAGATACCGCCGAGCATTGAAAGACAATCAAAT
TAAGCTGGAACAGGCCACCCATGACGCGCCTACGCTGTGGGAGAGGCACG
ACGCAGAGGTGCGTAAGGAGGAAGCAAAGCGAATTGCATTGTCGACCATC
GCAGATAGAGTGTTTGGGGCTGCATCGACGAGTGCAGACAAGAAAAACTG
GAGGGGCCGTGCTGCCGAGAAAATATTTGACGAGGAAGAGCGAGCAGTAA
TAAGCCTGTCGTCTTACTAG
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