mRNA_P-littoralis_Contig8.224.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.224.1
Unique NamemRNA_P-littoralis_Contig8.224.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:968289..968698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size170
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791630.8576436-CDS-P-littoralis_Contig8:968288..9683151680791630.8576436-CDS-P-littoralis_Contig8:968288..968315Pylaiella littoralis U1_48CDSP-littoralis_Contig8 968289..968315 +
1680791630.8750207-CDS-P-littoralis_Contig8:968557..9686981680791630.8750207-CDS-P-littoralis_Contig8:968557..968698Pylaiella littoralis U1_48CDSP-littoralis_Contig8 968558..968698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.224.1prot_P-littoralis_Contig8.224.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 968289..968698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.224.1

>prot_P-littoralis_Contig8.224.1 ID=prot_P-littoralis_Contig8.224.1|Name=mRNA_P-littoralis_Contig8.224.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
VGTSPASPEAARSMGASGIAASEFPDLRWKEHQLGSKLPVLLYLTHHDRD
MKTKKG
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mRNA from alignment at P-littoralis_Contig8:968289..968698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.224.1 ID=mRNA_P-littoralis_Contig8.224.1|Name=mRNA_P-littoralis_Contig8.224.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=410bp|location=Sequence derived from alignment at P-littoralis_Contig8:968289..968698+ (Pylaiella littoralis U1_48)
GTGGGGACTTCCCCTGCGAGCCCCGAGGTGACTGTTCGTATTGGGCAAGA
AATGAACCCCCAAACCTAGCGTCTTTTCTTGTTTTCTCGACATGAACTGT
CATATCAAATGTTAGCCGTAGGGTTGCCTGCTGCTTGAAGTTGGAAGGCT
CGAAGGTAAGCTTAGGATATTGGCTTACCACTCGCGTGCCCGGTTTCTTT
TGTCTCCGTATCGTAACTGCCACTTCTTCCACACTTTTTCCTGCTGCCCA
TACGTTGTCGACTTAGCAGGCTGCCAGGTCCATGGGGGCAAGCGGCATCG
CCGCCAGTGAGTTTCCCGACTTGAGATGGAAAGAACACCAGCTTGGATCG
AAGCTGCCTGTCCTTCTGTACCTCACCCACCATGACCGGGACATGAAGAC
GAAGAAAGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig8:968289..968698+

>mRNA_P-littoralis_Contig8.224.1 ID=mRNA_P-littoralis_Contig8.224.1|Name=mRNA_P-littoralis_Contig8.224.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig8:968289..968698+ (Pylaiella littoralis U1_48)
GTGGGGACTTCCCCTGCGAGCCCCGAGGCTGCCAGGTCCATGGGGGCAAG
CGGCATCGCCGCCAGTGAGTTTCCCGACTTGAGATGGAAAGAACACCAGC
TTGGATCGAAGCTGCCTGTCCTTCTGTACCTCACCCACCATGACCGGGAC
ATGAAGACGAAGAAAGGA
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