mRNA_P-littoralis_Contig8.18.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig8.18.1 vs. uniprot
Match: D8LB47_ECTSI (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB47_ECTSI) HSP 1 Score: 571 bits (1471), Expect = 2.210e-172 Identity = 592/1661 (35.64%), Postives = 752/1661 (45.27%), Query Frame = 1
Query: 277 MFRRTWATFVDGAISKHQQHEASGC--ESSVG--GGGRIELRDVMVLEEVLARIEDAVGGGRLIDHEGRTSATAVGLARDDSTESESISAVGNPSNESPLKRNDRTSLQTISGLPPMFENPRPSFFAAMYKYGPPPPTLDVKASHLSTTDNDSRSTRPRNALDPGRCSSTSPTTAGIQEGEERNFPRGDSQDGRETAGADAAFTPASDAVAPEGADGRVTDDPETSYLRKCSVASGGMNSSSSISSRGAVVAGPQGEDGRHCSEPRSVGSEVDVAQ-PISPELLPQLMESLYLGGRSR---TPSPVACNPLKPQPSRHSSHGAVHHHAAGETEKQEVLKGKRTQPALSSSDARSDILPAAAAAVTAFEVQQHAVTPQSQARLIQQSSEDEEEASF---HSPEQGGQAQRPREPHVDDLP-QTDPFPEDVVLSRLSAQFDATHIEEAGDEVTRSALRGQDG----------YLFSSKSEEMAGALEIT------VSKTSTCYHNHNG---------------------------------------------------------------GGVVTDEEERLPCALFREH-SGTMVGVTVPEYD--------------------------------------------------DDD----------------------------------------------GSSSPEDPPR-------ETRGQEDGCSRIRVDAESPELVRAGSACQTADE--NRHHDPWFDDECSGEGAAASRTCGSGDDSNDAAAFSPAQSPDGALVAGEEGGSQVFFGSTPSLDIGGFGRFDGCDDCVHALSPLALARSFD--DCGDAGGGDDACGXXXXCXXXXXXXXXXWGLSPDGVGDDCCGGLSPVRSASSESTDDPDGGEPPLSCRARRALFVNEKGGLEEDDEDITLTPEVSRSSRRNGCPSPFPRSTGGSMEETKEGK------DSERRDLEPSAASIEEGXXXXXXXXXXXXXSLARQRKKQRQ---------PEEPIDTLRGSV---------ALGDVTNTSARRYSSGRSGGERSL--SCQAGAKYHGGXXXXXXXG---------HEDQVSIGSFSESEKDSSRLGGSVWEGGGGEDNENTDGSSLAEGTPRRGRISPEDNA-GGFYPPLQVSNIAKKGPKGLSLSTLQRSTLQWMIWREGGEKAGGEAXXXXXXXXXXXXXXXXXXXXXXSAARASVRGGVLGHLRPDEAWTCVRALVRGDVA-SGGDPAGGKA-DRVRPVHGVTRLPCGATLIIAPTKKAAWQWSDRLESGVDGLSVLSYVMPLRERRRLSAKQVAAFDVVVTSYDVVKAKEVPREVKSKKTTSPRSWALPGSREWRAKHTKEEEGGRKTRPVASKTEHMVSLLHGVWWDRVVADGAQLLANQRSSRAAAALSLVGTARWCVVGRESMAVVENASERMRCLTAFLRVPAGVPMVEVAESLFYRSRPNHIAPLHPRSCFGGADNSLSLSEGGESQSSPGSSRRQRRPALGRRKSGNRGPGAGVQPT-AGRKGEPVEGGMEFGSPAMQRNGRNGRGGWRSPPVLEERRSGRSRGTE--ASRATREGEGEPPEKGKTEPGGQGREGIGGGGGAVTAGREVLTRGDVTYAATTLRLRRARGEAGPIEVG 4539
M+ +TWA FVDGAISKH Q + G SS G G GRI+++DVM +EE+LARIE A GG ID+E R DD ++++ S S L+ + R SL T LPPMF+NP PSF A+MY P + + ND +++R S EG++ GDS A + SDA+ G+ DD + SS + RG A E R C E R G E Q PI + L +LMESL+L G TP PV + + + H H H Q V G Q +S+ + SD+ + A++ ++ Q R SS EE + H E+ G+ P + D FPE+V++S+LSA DAT IE G+E+ G Y S M G + + V K+ GG V D + CAL +G++ + P YD DDD G SP P E R Q +R+ AESPE++R G A + R P FD + G G N+ A+F+ A+SP GA G G ++ GS S D G DG V +LSP LA S D + GDAG G D G W L P G DC GLSPVRSA+SE+TDD PP ++ + + ED D TLTPEV+ R + SP G +EE + G D+ ++ + G S R K R+ PEE T + ALGD TN R RS E SL S + G +Y GG G + +Q SI SFSESE + S+ G E G ED T SSLAEGTPRR D + GGFYPPLQV+N+A K +G +LSTLQ+STLQWM+WRE GEK G AXXXXXX ++GG+LGHL DEA TCV A+VR V + GD +G K R R +H T LPCG TLI+APTK+AAW+WSDRLESG GLSVL+YVMPLRERRRLSAKQVAAFDVVVT+YDV+KAKEVPR V++K+ TSPRSWALPGS +WR ++ KE GG+K +SKT+HMVSLLHGVWWDRVVADGAQ+LA QRS+RA AAL+L+GTARWC+V ESM++VE+ASERMRCL AFLRVPA VP+VEVAESL +RSRP HIAPL+PR+ G ADNSLSL+EG +S S R RR + G + RG G GV+ +GR+G P E G + M++ G +GRG W + P+ GRS+ T +R G +GR+ +R DVTY + L LRRARGEAG ++VG
Sbjct: 1 MYHKTWAAFVDGAISKHHQKTSDGVAGNSSDGRVGSGRIDVQDVMRVEEILARIERAEGGW--IDYERRPDG-------DDGADADASSLASG----SLLRSSGRKSLDT---LPPMFQNPGPSFLASMYNPAP----VQANSGKGRPLPNDVKASR-------------SGAKERSYEGDKYLPVVGDSC---------AVSSSRSDAL---GSVDAARDDQ--------------LCSSQTTVGRGDGTAFEY-EGRRQCLESRPGGPETKTEQRPIGRDDLSELMESLHLDGTESELSTPPPVRG---RSEETGHDLHREAH---------QPV--GAEAQEGTTSATSNSDLFGRNLSPAAAYKDEEMFAVAQD--RTQGGSSGGGEEVACPLEHEEEEKGEVPCVAASSSGTTPLRPDMFPEEVLMSQLSACLDATRIE--GEEIAHGGTTGXXXXXXXXXXSPLYASSEDKSSMIGGVTVVHASPRGVGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRTDLSGEVVAXXXXXXXXXXXXXVLGAVGGAVDDSQ----CALVPTPLAGSISSSSAPVYDGAAAAARVIPSAAECCRRSPLQLEFERKVSAAGKGRNGDALSGERKAGADDDDLSDGDRRRFVGSTLHAPDKLLGLLSSLVGNDPTPASVSAPAAGLTSGRPSPHHEPSSQGDALLECRAQAGDNARVDEQAESPEILRLGPASPNRESMIRREQRPSFDRGSWEVRDVSGDPHGGGVLGNNGASFTLARSPGGASTRGSRQGQRL--GSMLSPDSEGVVFLDGSGG-VSSLSPFVLAGSLDAAEMGDAGYGSDNGGG--------------WALPPGGGDGDC--GLSPVRSATSETTDDAP--SPPQGSGTPPSVLPRSREDMSED-RDTTLTPEVAP--RLSSSKSPLVVRAGSRLEEEERGDPGCGNVDASIQEARSKHKQADSGSLMPPPPPRHPSFSPRRTASKHRERAFSVSRETPEERCATQSSAADTRVVSLRTALGDRTNAPPRGRCDERSDEEESLPVSTRDGGRYDGGGSGARGCGGDRRGGLAEYSEQASIDSFSESEPERSKPGAGAKEAGADEDM--TGDSSLAEGTPRRRGAGARDRSLGGFYPPLQVANLANKAREGSTLSTLQKSTLQWMLWRERGEKGGRSAXXXXXXVSDDDDD-----------GAIDIKGGLLGHLPSDEASTCVHAVVRAGVTFNDGDGSGRKVGSRARRIHTGTGLPCGPTLILAPTKEAAWRWSDRLESGSGGLSVLNYVMPLRERRRLSAKQVAAFDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQWRTRNAKE--GGQKRTSASSKTDHMVSLLHGVWWDRVVADGAQILATQRSARAVAALALMGTARWCLVDCESMSIVEDASERMRCLAAFLRVPAAVPLVEVAESLLFRSRPRHIAPLYPRAP-GAADNSLSLTEGDDSSGC--SQRHTRRSSRG--VNTRRGGGGGVRKRGSGREGRPSEEGKRLST--MEQVG-DGRGEWGALPMD----GGRSQRTSHAKTRGXXXXXXXXXXXXXXXXXXXXXXXXXSDCGGAASGRQ-FSRRDVTYVPSRLTLRRARGEAGSMQVG 1527
BLAST of mRNA_P-littoralis_Contig8.18.1 vs. uniprot
Match: A0A6H5KIY1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY1_9PHAE) HSP 1 Score: 571 bits (1471), Expect = 2.870e-172 Identity = 608/1679 (36.21%), Postives = 766/1679 (45.62%), Query Frame = 1
Query: 262 LSNEAMFRRTWATFVDGAISKHQQH----EASGCESSVGGGGRIELRDVMVLEEVLARIEDAVGGGRLIDHEGRTSATAVGLARDDSTESESISAVGNPSNESPLKRNDRTSLQTISGLPPMFENPRPSFFAAMYKYGPPPPTLDVKASHLSTTDNDSRSTRPRNALDPGRCSSTSPTTAGIQEGEERNFPRGDSQDGRETAGADAAFTPA-SDAVAPEGADGRVTDDPETSYLRKCSVASGGMNSSSSISSRGAVVAGPQGEDGRHCSEPRSVGSEVDVAQ-PISPELLPQLMESLYLGGRSR---TPSPVACNPLKPQPSRHSSHGAVHHHAAGETEKQEVLKGKRTQPALSSSDARSDILPAAAAAVTAFEVQQHAVTPQSQARLIQQSSEDEEEASFH-------------SPEQGGQAQRPREPHVDDLPQTDPFPEDVVLSRLSAQFDATHIEEAGDEVTRSALRGQDGYLFSSKSEEMAGALEITVSKTS-----TCYHNHNGGGVVTDEEERLPCALFR-EHSGTMVGVTVPE---YDD------------------------------------------------------------------------------------------------------------------DDGS-------------------------------------------------------SSPEDPPRETRGQEDGCSRIRVDAESPELVRAGSACQTADENRHHD--PWFDDECSGEGAAASRTCGSGDDSNDAAAFSPAQSPDGALVAGEEGGSQVFFGSTPSLDIGGFGRFDGCDDCVHALSPLALARSFD--DCGDAGGGDDACGXXXXCXXXXXXXXXXWGLSPDGVGDDCCGGLSPVRSASSESTDDPDGGEPPLSCRARRALFVNEKGGLEEDDEDITLTPEVSRSSRRNGCPSPFPRSTGGSMEETKEGK------DSERRDLEPSAASIEEGXXXXXXXXXXXXXSLARQRKKQRQP---------EEPIDTLRGSV---------ALGDVTNTSARRYSSGRSGGERSL--SCQAGAKYHGGXXXXXXXGHE--DQVSIGSFSESEKDSSRLGGSVWEGGGGEDNENTDGSSLAEGTPRRGRISPED-NAGGFYPPLQVSNIAKKGPKGLSLSTLQRSTLQWMIWREGGEKAGGEAXXXXXXXXXXXXXXXXXXXXXXSAARASVRGGVLGHLRPDEAWTCVRALVRGDVA-SGGDPAGGKADRVRPVHGVTRLPCGATLIIAPTKKAAWQWSDRLESGVDGLSVLSYVMPLRERRRLSAKQVAAFDVVVTSYDVVKAKEVPREVKSKKTTSPRSWALPGSREWRAKHTKEEEGGRKTRPVASKTEHMVSLLHGVWWDRVVADGAQLLANQRSSRAAAALSLVGTARWCVVGRESMAVVENASERMR--------------CLTAFLRVPAGVPMVEVAESLFYRSRPNHIAPLHPRSCFGGADNSLSLSEGGESQSSPGSSRRQRRPALGRRKSGNRGPGAGVQPT-AGRKGEPVEGGMEFGSPAMQRNGRNGRGGWRSPPVLEERRSGRSRGTEASRAT-----REGEGEPPEKGKTEPGGQGREGIGGGGGAVTAGREVLTRGDVTYAATTLRLRRARGEAGPIEV 4536
LSN AM+ +TWATFVD AISKH Q A + G GRI+L+DVM +EE+LARIE A GG ID+E RT D + + A S P + + R +L T LPPMF+NP PSF A+MY P P + ++G + N + +E + A+ + P D+ A G+ G + + L A SS ++ + E R C E R G E Q PI + L +LMESL+L G TP PV L+ Q G H A + + L+G PA ++S SD L + +A+E ++ Q + ++ + G RP D F EDV++S LSA DAT IE G+E G +G K EE + + K+S T H G + EE+ L A+ + SG VGVTV E Y D DDG SS D E R Q +R+ AESPE++R G A + H+ P FD SG G G N+ A+F+ A+SP A G ++ S S D G G DG V +LSP LA SFD D GDAG G G W L P G GD C LSPVRSA+SE+TDD PP ++F + ED D TLTPEV +R + SPF S G +EE + G D+ R+ + + G XX S R K R+ EE T + ALGD TN + R GRS E SL S + G + GG E +Q SI SFSESE S+ G S E G ED TDGSSLAEGTPRR D GGFYPPLQV+N+A K +GL+LSTLQ STLQWM+WRE GEK G A XXXXXXXXX ++GG+LGHL +EA C+ ALVR V + GD + G R R H T LPCG+TLI+APTK+AAW+WSDRLESG GLSVLSYVMPLRERRRLSAKQVAAFDVVVT+YDV+KAKEVPR V++K+ TSPRSWALPGS +WR ++ KE G +++ AS T+HMVSLLHGVWWDRVVADGAQ+LA QRS+RA AAL+L GTARWC+V ESM++VE+AS+RMR CL AFLRVPA VP+V+VAESLF+RSRP HIAPL+PR+ G ADNSLSL+EG +S G S R RR + R + RG G V+ +GR+G P E G + M++ G GRG W + P+ GRS+GT +++ REG E E+G GG R G GGA + GR+ +RG +TY + LRLRRARGE GP++V
Sbjct: 4 LSNAAMYHKTWATFVDDAISKHHQSTNDGSAGNSRDGIVGSGRIDLQDVMRVEEILARIERAEGGW--IDYE-RTP---------DGDDGADVDASSLASGSLP-RSSGRKALDT---LPPMFQNPGPSFLASMYN---PAPVIAYSG----------------------------------KDGPQPNDVKASRSGAKERSCAEDKYLPVVRDSFAVSGSMG------DYNGLGGVYAAKEDQLCSSQMAVGSGDGTASEHEGRRRCLESRPGGPETKTEQQPIGRDDLSELMESLHLDGTESGLSTPPPVR-GQLEEQ-------GDDLHRGAQQPAGAQALEG----PASATSS--SDPLDRKISVASAYENEEMFAVSQKHTKGGSNGGXEQVVCPLEXXXXXKGVVRCVAASSSGATPLRP-----------DLFSEDVLMSELSACPDATRIE--GEETAHGETTGAEG---DKKEEEQSPLFASSEDKSSMIGGVTAVHASPRGVGKSGEEDHLRGAVLSVQRSGVEVGVTVLEGSGYGDSGSGSSRTDLSGEFVAAATXXXXXXXXXXVLGAVDGAVDDSQCALVPTPLAGSXXXXXXXXXXXXXXXXXARAIPSGAECCHRSPLQLEFERKVSAAGNGRNGDALSGERKVGADDGDLSDGDRIRFVGSTLNAPDKLLSLLSSPVGNDPTPASVSAPAAGLNGGRPSPHHEPSSQGDARLERRAQAGDKARVDEQAESPEILRLGPASPARERMICHERRPSFDRGFSGVRDVGGVLHGGGVPGNNGASFTLARSP--ASTRGVRRDQRLR--SMLSPDTEGVGFLDGTGG-VSSLSPFVLAGSFDVADMGDAGYGSGNGGG--------------WAL-PSGGGDGDCD-LSPVRSATSETTDDVP--SPPQGLGTPSSVFPRSGEDMSEDG-DTTLTPEVE--TRLSSSRSPFVVSAGSRLEEEEGGDPGCGNVDASTREGRSTRKQADSGGFMPPXXPRHPSFSPRRTTSKHRERALSFSRKTHEERCATQSSAADTRVVPLRTALGDRTNAAPRGRCDGRSDEEESLPVSTRDGGRCDGGGGVRRCGVAEYSEQASIDSFSESEPGRSKPGVSATEAGADEDM--TDGSSLAEGTPRRRGAGARDCYLGGFYPPLQVANLASKAREGLTLSTLQESTLQWMLWRERGEKGGRSAVAAGASVXXXXXXXXXAI---------DIKGGLLGHLSSEEASACLHALVRAGVTFNDGDGSRGMVGRARRTHNGTGLPCGSTLILAPTKEAAWRWSDRLESGSGGLSVLSYVMPLRERRRLSAKQVAAFDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQWRTRNGKEA-GQKRSSSSASMTDHMVSLLHGVWWDRVVADGAQILATQRSARAVAALTLAGTARWCLVDCESMSIVEDASDRMRAWIGREKEDNFLEECLAAFLRVPAAVPLVDVAESLFFRSRPRHIAPLYPRAP-GAADNSLSLTEGDDSS---GCSLRHRRRSS-RGANTRRGGGMCVKKRGSGREGRPSEEGKRLST--MEQVGDGGRG-WGALPID----GGRSQGTSHAKSRGIGGRREGSPENVERGHG--GGGIRRGEDDRGGAAS-GRQ-FSRGGITYVPSRLRLRRARGETGPMQV 1539
BLAST of mRNA_P-littoralis_Contig8.18.1 vs. uniprot
Match: A0A1V9ZDT9_9STRA (SNF2 family DNA/RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZDT9_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 3.160e-9 Identity = 60/178 (33.71%), Postives = 86/178 (48.31%), Query Frame = 1
Query: 3424 TLIIAPTKKAAWQWSDRLESGVDGLSVLSYVMPLRERRRLSAKQVAAFDVVVTSYDVVKAKEVPREVKSKKTTSPRSWALPGSREWRAKHTKEEEGGRKTRPVASKTEHMVSLLHGVWWDRVVADGAQLLANQRSSRAAAALSLVGTARWCVVGRESMAVVENASERMRCLTAFLRVP 3957
TLIIAP A QW +++ LSV Y R+R R AFDV++++YDV++ KE V S + SW AK +EE + ++S LH + W+RV+ D A L+AN S+R A+ L+ ARWCV G ++N E + L FL +P
Sbjct: 434 TLIIAPLSVLA-QWEFEVKAKTS-LSVGVYHGTGRKRFR-HQPDFCAFDVILSTYDVLRMKETAVPVASAGRSRDTSWIA-------AKRQREE-------------KQLLSRLHKIHWERVILDEAHLIANMASARTQASFQLLANARWCVTGTP----IQNRLEDLHPLFKFLGIP 584
BLAST of mRNA_P-littoralis_Contig8.18.1 vs. uniprot
Match: A0A067CBP1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CBP1_SAPPC) HSP 1 Score: 66.2 bits (160), Expect = 5.460e-7 Identity = 60/181 (33.15%), Postives = 84/181 (46.41%), Query Frame = 1
Query: 3424 TLIIAPTKKAAWQWSDRLESGVDGLSVLSYVMPLRERRRLSAKQVAAFDVVVTSYDVVKAKEVPREVKSKKTTSPR---SWALPGSREWRAKHTKEEEGGRKTRPVASKTEHMVSLLHGVWWDRVVADGAQLLANQRSSRAAAALSLVGTARWCVVGRESMAVVENASERMRCLTAFLRVP 3957
TLIIAP QW ++ LSV Y R+R R AFD+V+++YDV++ EV V T+PR SW K +EE + ++S LH V WDRV+ D A L+AN ++R A+ L ARWCV G ++N E + L F+ +P
Sbjct: 416 TLIIAPLS-LLHQWEREIKHKTS-LSVGVYHGTDRKRFRRDP-DFHAFDIVLSTYDVLRLPEVAIPVSMVYRTAPRKDTSWIA-------TKRLREE-------------KVLLSKLHRVHWDRVILDEAHLIANMTAARTQASFQLHARARWCVTGTP----IQNRCEDLHPLFKFIGIP 569 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig8.18.1 >prot_P-littoralis_Contig8.18.1 ID=prot_P-littoralis_Contig8.18.1|Name=mRNA_P-littoralis_Contig8.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1451bp MSRNDDGSPRPHNSSSSAKCTLSNEAMFRRTWATFVDGAISKHQQHEASGback to top mRNA from alignment at P-littoralis_Contig8:109057..117440- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig8.18.1 ID=mRNA_P-littoralis_Contig8.18.1|Name=mRNA_P-littoralis_Contig8.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8384bp|location=Sequence derived from alignment at P-littoralis_Contig8:109057..117440- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig8:109057..117440- >mRNA_P-littoralis_Contig8.18.1 ID=mRNA_P-littoralis_Contig8.18.1|Name=mRNA_P-littoralis_Contig8.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=4353bp|location=Sequence derived from alignment at P-littoralis_Contig8:109057..117440- (Pylaiella littoralis U1_48)back to top |