mRNA_P-littoralis_Contig799.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig799.14.1
Unique NamemRNA_P-littoralis_Contig799.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig799.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig799contigP-littoralis_Contig799:16933..17499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size567
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791629.832926-UTR-P-littoralis_Contig799:16932..171001680791629.832926-UTR-P-littoralis_Contig799:16932..17100Pylaiella littoralis U1_48UTRP-littoralis_Contig799 16933..17100 +
1680791629.894426-UTR-P-littoralis_Contig799:17421..174991680791629.894426-UTR-P-littoralis_Contig799:17421..17499Pylaiella littoralis U1_48UTRP-littoralis_Contig799 17422..17499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791629.876943-CDS-P-littoralis_Contig799:17100..174211680791629.876943-CDS-P-littoralis_Contig799:17100..17421Pylaiella littoralis U1_48CDSP-littoralis_Contig799 17101..17421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig799.14.1prot_P-littoralis_Contig799.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig799 17101..17421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig799.14.1

>prot_P-littoralis_Contig799.14.1 ID=prot_P-littoralis_Contig799.14.1|Name=mRNA_P-littoralis_Contig799.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
MRSSTIGYVRECAGTPPRPCCSVTVTAGAPYKDVPTVAARYRLFCRDPFT
LLALPATTLPKSARNTTQKYPSLFGDPLPFDQEEPSVRSSRASTSTRITY
VLGTDQ*
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mRNA from alignment at P-littoralis_Contig799:16933..17499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig799.14.1 ID=mRNA_P-littoralis_Contig799.14.1|Name=mRNA_P-littoralis_Contig799.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=567bp|location=Sequence derived from alignment at P-littoralis_Contig799:16933..17499+ (Pylaiella littoralis U1_48)
TGAGAAGAAGAAAGAAAGGCCGTTGAGTCCAGCAAATACGTACTCCTGTA
CAGCAGTACAGACAGACAGACGGCGGTGACTTCTTCTCTTTACATGAACT
GCTCTTGTTTTGTGCTGCTGACGATGAGAACTGAACTATACAGTATACCA
TAGGTTTTATTGGCATGGATGCGCAGTTCGACTATCGGGTACGTACGTGA
ATGCGCAGGAACGCCTCCCCGCCCATGTTGCAGCGTGACGGTTACTGCGG
GGGCTCCGTATAAAGATGTCCCCACAGTAGCTGCAAGGTATCGTCTCTTC
TGCCGGGACCCTTTCACGCTGCTCGCGCTCCCCGCCACAACGCTTCCAAA
AAGTGCACGGAATACGACACAAAAGTACCCATCGCTCTTCGGAGACCCTC
TGCCCTTTGACCAAGAAGAGCCTTCAGTGAGGTCCAGTCGAGCTAGCACA
AGCACGCGTATCACGTACGTACTCGGTACCGATCAGTGATACTGTCTCAT
CCTTCCAGGTCAGCTGTGCCTTGCCATCCAGAGGATTCCTGAGAGGACCC
TGAGATTTCATGACTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig799:16933..17499+

>mRNA_P-littoralis_Contig799.14.1 ID=mRNA_P-littoralis_Contig799.14.1|Name=mRNA_P-littoralis_Contig799.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig799:16933..17499+ (Pylaiella littoralis U1_48)
ATGCGCAGTTCGACTATCGGGTACGTACGTGAATGCGCAGGAACGCCTCC
CCGCCCATGTTGCAGCGTGACGGTTACTGCGGGGGCTCCGTATAAAGATG
TCCCCACAGTAGCTGCAAGGTATCGTCTCTTCTGCCGGGACCCTTTCACG
CTGCTCGCGCTCCCCGCCACAACGCTTCCAAAAAGTGCACGGAATACGAC
ACAAAAGTACCCATCGCTCTTCGGAGACCCTCTGCCCTTTGACCAAGAAG
AGCCTTCAGTGAGGTCCAGTCGAGCTAGCACAAGCACGCGTATCACGTAC
GTACTCGGTACCGATCAGTGA
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