mRNA_P-littoralis_Contig798.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig798.40.1
Unique NamemRNA_P-littoralis_Contig798.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig798.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig798contigP-littoralis_Contig798:121791..122883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size373
Hectar predicted targeting categoryother localisation
Exons2
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791628.2199435-CDS-P-littoralis_Contig798:121790..1219101680791628.2199435-CDS-P-littoralis_Contig798:121790..121910Pylaiella littoralis U1_48CDSP-littoralis_Contig798 121791..121910 +
1680791628.2308276-CDS-P-littoralis_Contig798:122632..1228811680791628.2308276-CDS-P-littoralis_Contig798:122632..122881Pylaiella littoralis U1_48CDSP-littoralis_Contig798 122633..122881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig798.40.1prot_P-littoralis_Contig798.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig798 121791..122881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig798.40.1

>prot_P-littoralis_Contig798.40.1 ID=prot_P-littoralis_Contig798.40.1|Name=mRNA_P-littoralis_Contig798.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
ADKAHPAAPGIARIDHSILIGKDSTQVRSLVGVSSHYSLEKLYEFLDAEG
AATHVVFYDKREGSGLKQTGERVSHRNGVFRGINGLFLTLMVLRTAVPLV
VASTLFGVHETTVGRAFTTWLNF
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mRNA from alignment at P-littoralis_Contig798:121791..122883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig798.40.1 ID=mRNA_P-littoralis_Contig798.40.1|Name=mRNA_P-littoralis_Contig798.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1093bp|location=Sequence derived from alignment at P-littoralis_Contig798:121791..122883+ (Pylaiella littoralis U1_48)
GCAGACAAAGCGCATCCCGCAGCACCTGGTATCGCGAGGATCGATCACTC
CATCCTTATCGGCAAGGATTCAACACAAGTTCGTAGTCTTGTGGGAGTGA
GCTCCCACTACTCTCTGGAGGTGAGATTCATGCCACTGCTGTACAAGTAG
CTGCAGCAGGAGCGTCGAACTGCGATGGTAGGCATGCACAGCTCAGAGAA
CAGGAGAAGTCCTTACCTCAACCAAAATGGGGCTTGTTCGCCCTTGTTCG
CCCTTGATTCGTGCTGCCGGTAACATTTCAGGAAAGTCACATTCATAAAC
TCGCCCCATTTTTGAAGTAAGACATCGCGTGAACATCCTCCCTCGTGTAA
AAAGGGAACGTGTACAATCGTGTTTGAAAGGGTAAGATAATGGGGAAAGG
CTTGGCTCTCACTAGTGTAGAGTGCCTCGCATGACACATGAATACCATTA
CCATAATGCGCAAGCACCTTTCAGATTTTCAATTTTCAGAAGATCATCCC
CACCGTGGTTTTTTGCTGGTATTTTTTGCTGGATCTTCAGGGGTTACCTA
GGCCGCCGCCGCAGCCGGTCCAACCCGTTCGCTAACATAAGGCCCAGGGC
TCGTTCTTTGGAGGCCGTGAAAATATTTGTGTTCGTGAAATGCTACAGAT
CGATGTATGACGTACTCCCGACGGAGCCGATGCCAGTATTGATTCCGTCG
GGTATGTGAGCAAGGAGACTCCTTCATGCCCCCCCCTTTGTATTTCGCCT
GCGCTTCCTCACACGAATATGCTCAAGTACAGACGGCCGTCTGACCCGTT
ATTTTTATTGTGCGCGTGAACCCCCGTATTACTTCCGAACAGAAGCTTTA
CGAATTTTTGGATGCAGAGGGCGCCGCGACACATGTGGTGTTTTACGACA
AACGAGAGGGCAGCGGATTGAAACAAACTGGAGAAAGGGTCAGCCATAGA
AATGGCGTTTTTCGCGGTATCAATGGTTTGTTTTTGACGCTGATGGTGTT
GCGCACTGCCGTTCCGCTGGTGGTGGCGTCGACCCTCTTTGGAGTACACG
AGACCACGGTAGGTAGAGCGTTCACGACATGGCTAAATTTCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig798:121791..122883+

>mRNA_P-littoralis_Contig798.40.1 ID=mRNA_P-littoralis_Contig798.40.1|Name=mRNA_P-littoralis_Contig798.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig798:121791..122883+ (Pylaiella littoralis U1_48)
GCAGACAAAGCGCATCCCGCAGCACCTGGTATCGCGAGGATCGATCACTC
CATCCTTATCGGCAAGGATTCAACACAAGTTCGTAGTCTTGTGGGAGTGA
GCTCCCACTACTCTCTGGAGAAGCTTTACGAATTTTTGGATGCAGAGGGC
GCCGCGACACATGTGGTGTTTTACGACAAACGAGAGGGCAGCGGATTGAA
ACAAACTGGAGAAAGGGTCAGCCATAGAAATGGCGTTTTTCGCGGTATCA
ATGGTTTGTTTTTGACGCTGATGGTGTTGCGCACTGCCGTTCCGCTGGTG
GTGGCGTCGACCCTCTTTGGAGTACACGAGACCACGGTAGGTAGAGCGTT
CACGACATGGCTAAATTTC
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