mRNA_P-littoralis_Contig795.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig795.9.1
Unique NamemRNA_P-littoralis_Contig795.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig795.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig795contigP-littoralis_Contig795:17651..18464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3U9
PFAMsHelitron_like_N,PIF1
Model size258
Max annot lvl2759|Eukaryota
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.51e-10
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size258
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791625.2294476-CDS-P-littoralis_Contig795:17650..178251680791625.2294476-CDS-P-littoralis_Contig795:17650..17825Pylaiella littoralis U1_48CDSP-littoralis_Contig795 17651..17825 +
1680791625.2520335-CDS-P-littoralis_Contig795:18381..184641680791625.2520335-CDS-P-littoralis_Contig795:18381..18464Pylaiella littoralis U1_48CDSP-littoralis_Contig795 18382..18464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig795.9.1prot_P-littoralis_Contig795.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig795 17651..18464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig795.9.1

>prot_P-littoralis_Contig795.9.1 ID=prot_P-littoralis_Contig795.9.1|Name=mRNA_P-littoralis_Contig795.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
AHDPANPWPNGLREGTKNLEESKTEHLPRVVCLGIGLPIVLSKPTDQLVG
LGICNNSDDIAGEALLCLAAGQLPAHGPVRVLRPRT
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mRNA from alignment at P-littoralis_Contig795:17651..18464+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig795.9.1 ID=mRNA_P-littoralis_Contig795.9.1|Name=mRNA_P-littoralis_Contig795.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=814bp|location=Sequence derived from alignment at P-littoralis_Contig795:17651..18464+ (Pylaiella littoralis U1_48)
GCTCACGACCCTGCTAATCCTTGGCCTAACGGCCTGAGGGAGGGAACGAA
GAACCTCGAGGAGTCCAAGACAGAGCATCTGCCTCGGGTCGTGTGCCTTG
GGATCGGTCTGCCCATCGTGTTATCCAAGCCAACTGACCAACTTGTTGGC
CTCGGCATTTGCAATAATTCCGACGGTGAGCTCGAGTCGAGTGGTTGTGC
TGCTATCTTCCTGTTTTAGGTGTGCATTGCCTACCCTTTACTGTTGTCTC
TGTTAAACTCTCGCATCTTCGCAGGAGTTATCGTTTCCGTCGACCTCGAC
CCACGACAGCTGTAGTCGGACATAATAATGTGATAAATTGGTTAGACTAA
TGCCTCTAGGGTAGGTGTAAGGTTCTTGTTTTGAATATACATGCGACTTC
CAGCGTTGTTCCAGACCAGGCCTGCTGACGGCAGCGAGTCCAACTCAATT
TTTCCAGTCATCGTCTGTGCGTGCGGCCGACTCGCGTTTTTCATACTCTG
TTCTTCGGCTCCTGCGGAAGTACGCCGCGATCTATGTAGTCTATACTCTT
CCTCCCCTCACGTCCTAGTATGCGACCACGTTCGTTCATGTTCCTCTTCC
TTCTCGCACCGTGCTTCCTCCACCCTCGGTCTTCTTCTTTCGTGTTCTCC
AATCTCGTGCTCATTCCTTCGCATCCGTCTTGCTTCATCCGCTATCATTT
CTCTTCTTCTACTCTCGTCCCTTTTCCACAGATATCGCCGGAGAGGCCTT
ACTATGTCTGGCAGCAGGGCAACTACCTGCACACGGACCCGTCCGAGTGC
TCAGGCCTCGAACT
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Coding sequence (CDS) from alignment at P-littoralis_Contig795:17651..18464+

>mRNA_P-littoralis_Contig795.9.1 ID=mRNA_P-littoralis_Contig795.9.1|Name=mRNA_P-littoralis_Contig795.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig795:17651..18464+ (Pylaiella littoralis U1_48)
GCTCACGACCCTGCTAATCCTTGGCCTAACGGCCTGAGGGAGGGAACGAA
GAACCTCGAGGAGTCCAAGACAGAGCATCTGCCTCGGGTCGTGTGCCTTG
GGATCGGTCTGCCCATCGTGTTATCCAAGCCAACTGACCAACTTGTTGGC
CTCGGCATTTGCAATAATTCCGACGATATCGCCGGAGAGGCCTTACTATG
TCTGGCAGCAGGGCAACTACCTGCACACGGACCCGTCCGAGTGCTCAGGC
CTCGAACT
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