mRNA_P-littoralis_Contig795.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig795.26.1
Unique NamemRNA_P-littoralis_Contig795.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig795.26.1 vs. uniprot
Match: D7G690_ECTSI (NOT2_3_5 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G690_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 3.520e-48
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:    1 MHLKNFQVETLFYIFYSMPQDVLQAYAAQELHTREWRFQSVLKLWFKRVGPADGNVPPNVEDIYFDHNEWQRQFFAGNVQMI 246
            MHLKNFQ+ETLFYIFYSMPQDVLQAYAAQELH REWRFQSVLKLWFKRVGPADGNVPPNVE IYFDHNEWQRQFFAGNVQMI
Sbjct:  429 MHLKNFQLETLFYIFYSMPQDVLQAYAAQELHAREWRFQSVLKLWFKRVGPADGNVPPNVEYIYFDHNEWQRQFFAGNVQMI 510
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BLAST of mRNA_P-littoralis_Contig795.26.1 vs. uniprot
Match: A0A448Z705_9STRA (NOT2_3_5 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z705_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.100e-27
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    4 HLKNFQVETLFYIFYSMPQDVLQAYAAQELHTREWRFQSVLKLWFKRVGPADG--NVPPNVED-IYFDHNEWQRQFFAGNV 237
            HL+ FQ ETLFYIFY+MP+DVLQAYAAQEL+TREWR+   LKLWFKR GPADG    P N +  +YFD N W+++ F G++
Sbjct:   10 HLQQFQPETLFYIFYAMPKDVLQAYAAQELYTREWRYHGDLKLWFKRAGPADGIPAQPSNGQQYLYFDINSWEKRLFNGSM 90
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BLAST of mRNA_P-littoralis_Contig795.26.1 vs. uniprot
Match: A0A6U3ZWB8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZWB8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.040e-26
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    4 HLKNFQVETLFYIFYSMPQDVLQAYAAQELHTREWRFQSVLKLWFKRVGPADG---NVPPNVEDIYFDHNEWQRQFFAGNV 237
            HL  FQ+ETLFYIFY++P+DVLQAYAAQEL++REWR+   LKLWFKR GPADG   N    V+ IYFD N W+R+ F GN+
Sbjct:  378 HLSKFQLETLFYIFYALPKDVLQAYAAQELYSREWRYHVELKLWFKRAGPADGVANNAGSGVQYIYFDINSWERRLFNGNM 458
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BLAST of mRNA_P-littoralis_Contig795.26.1 vs. uniprot
Match: A0A7S2YKN9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YKN9_9STRA)

HSP 1 Score: 105 bits (262), Expect = 7.520e-26
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    4 HLKNFQVETLFYIFYSMPQDVLQAYAAQELHTREWRFQSVLKLWFKRVGPADGNVPPNVED-----IYFDHNEWQRQFFAGNV 237
            HL  FQ+ETLFYIFY++P+DVLQAY+AQEL++REWR+   LKLWFKR GP+DG    +        +YFD N W+R+ F GN+
Sbjct:   86 HLSKFQLETLFYIFYALPKDVLQAYSAQELYSREWRYHGELKLWFKRAGPSDGLAASSAASAAGQYLYFDINTWERRLFNGNM 168
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BLAST of mRNA_P-littoralis_Contig795.26.1 vs. uniprot
Match: A0A7S2EBZ5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EBZ5_TRICV)

HSP 1 Score: 110 bits (274), Expect = 9.600e-26
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    4 HLKNFQVETLFYIFYSMPQDVLQAYAAQELHTREWRFQSVLKLWFKRVGPADG---NVPPNVEDIYFDHNEWQRQFFAGNVQMI 246
            HL  FQ+ETLFYIFY++P+DVLQAYAAQEL++REWR+   LKLWFKR GP+DG         + IYFD N W+R+ F GNVQ I
Sbjct:  335 HLSKFQLETLFYIFYALPRDVLQAYAAQELYSREWRYHVDLKLWFKRAGPSDGLTATANGGNQYIYFDVNTWERRLFNGNVQTI 418
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BLAST of mRNA_P-littoralis_Contig795.26.1 vs. uniprot
Match: A0A7R9W176_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W176_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.450e-25
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    4 HLKNFQVETLFYIFYSMPQDVLQAYAAQELHTREWRFQSVLKLWFKRVGPADG---NVPPNVEDIYFDHNEWQRQFFAGNVQMI 246
            HL  FQ+ETLFYIFY++P+DVLQAYAAQEL++REWR+   LKLWFKR G +DG        ++ IYFD N W+R+ F GNVQ +
Sbjct:  329 HLSKFQLETLFYIFYALPKDVLQAYAAQELYSREWRYHVDLKLWFKRGGASDGLAATANGGIQYIYFDVNTWERRLFNGNVQSV 412
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BLAST of mRNA_P-littoralis_Contig795.26.1 vs. uniprot
Match: A0A1E7FFJ6_9STRA (NOT2_3_5-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFJ6_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.290e-24
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    4 HLKNFQVETLFYIFYSMPQDVLQAYAAQELHTREWRFQSVLKLWFKRVGPADGNVPPNV---EDIYFDHNEWQR 216
            HL+ FQ ETLFYIFY++P+DVLQAYAAQEL+TREWR+   LKLWFKR GPADG +P +    + +YFD N W++
Sbjct:   80 HLQQFQPETLFYIFYALPKDVLQAYAAQELYTREWRYHGDLKLWFKRAGPADG-IPASSAAQQYLYFDINSWEK 152
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BLAST of mRNA_P-littoralis_Contig795.26.1 vs. uniprot
Match: A0A6V0BF73_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BF73_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.760e-24
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    4 HLKNFQVETLFYIFYSMPQDVLQAYAAQELHTREWRFQSVLKLWFKRVGPADGNVPPNV----EDIYFDHNEWQRQFFAGNV 237
            HL+ FQ ETLFYIFY+MP+DVLQAYAAQEL+TREWR+   LKLWFKR GPADG +P       + +YFD N W+++ F G++
Sbjct:  392 HLQQFQPETLFYIFYAMPKDVLQAYAAQELYTREWRYHGDLKLWFKRAGPADG-IPAQSSAGQQYLYFDINSWEKRLFNGSM 472
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BLAST of mRNA_P-littoralis_Contig795.26.1 vs. uniprot
Match: A0A7S1VTU9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VTU9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.890e-23
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    4 HLKNFQVETLFYIFYSMPQDVLQAYAAQELHTREWRFQSVLKLWFKRVGPADGNVPPNVED---IYFDHNEWQRQFFAGNVQMIAS 252
            HL  FQ+ETLFYIF+++P+DVLQAY+AQEL+TREWR+ + LK WFK+  PADG +P        +YFD N W+R+ F GN   I S
Sbjct:  344 HLSKFQLETLFYIFHALPKDVLQAYSAQELYTREWRYHAQLKRWFKQATPADG-IPAQTSSPQLLYFDMNSWERRIFTGNAADITS 428
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BLAST of mRNA_P-littoralis_Contig795.26.1 vs. uniprot
Match: A0A7S0C8Q4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C8Q4_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.390e-23
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    4 HLKNFQVETLFYIFYSMPQDVLQAYAAQELHTREWRFQSVLKLWFKRVGPADGNVPPNVEDIYFDHNEWQRQFFAGNV 237
            HL  FQ+ETLFYIFY++P+DVLQAYAAQEL++R+WR+   LKLWFKR  P D       + IYFD N W+R+ F G++
Sbjct:  222 HLSKFQLETLFYIFYALPKDVLQAYAAQELYSRDWRYHVDLKLWFKRASPVDVPNANGTQYIYFDINSWERRIFNGSM 299
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig795.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G690_ECTSI3.520e-4896.34NOT2_3_5 domain-containing protein n=2 Tax=Ectocar... [more]
A0A448Z705_9STRA1.100e-2762.96NOT2_3_5 domain-containing protein n=1 Tax=Pseudo-... [more]
A0A6U3ZWB8_9STRA1.040e-2664.20Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2YKN9_9STRA7.520e-2656.63Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2EBZ5_TRICV9.600e-2661.90Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7R9W176_9STRA6.450e-2559.52Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1E7FFJ6_9STRA1.290e-2463.51NOT2_3_5-domain-containing protein (Fragment) n=1 ... [more]
A0A6V0BF73_9STRA2.760e-2460.98Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1VTU9_9STRA1.890e-2355.81Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S0C8Q4_9STRA2.390e-2357.69Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig795contigP-littoralis_Contig795:90259..91381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G690
Preferred nameVIP2
PFAMsNOT2_3_5
Model size422
Max annot lvl2759|Eukaryota
KEGG koko:K12605
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000289,GO:0000290,GO:0000749,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006401,GO:0006402,GO:0006417,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015074,GO:0016070,GO:0016071,GO:0016567,GO:0017148,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019438,GO:0019439,GO:0019538,GO:0030014,GO:0030015,GO:0031086,GO:0031087,GO:0031136,GO:0031137,GO:0031139,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032268,GO:0032269,GO:0032446,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036211,GO:0036464,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043900,GO:0043902,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0046999,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070647,GO:0070887,GO:0071310,GO:0071444,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000113,GO:2000241,GO:2000243,GO:2001141
Exons2
Evalue1.68e-49
EggNOG OGsCOG5601@1|root,KOG2151@2759|Eukaryota
Descriptionnuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Cds size327
COG categoryK
BRITEko00000,ko00001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791625.6512508-CDS-P-littoralis_Contig795:90258..903301680791625.6512508-CDS-P-littoralis_Contig795:90258..90330Pylaiella littoralis U1_48CDSP-littoralis_Contig795 90259..90330 +
1680791625.6638818-CDS-P-littoralis_Contig795:91031..912861680791625.6638818-CDS-P-littoralis_Contig795:91031..91286Pylaiella littoralis U1_48CDSP-littoralis_Contig795 91032..91286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791625.6805725-UTR-P-littoralis_Contig795:91286..913811680791625.6805725-UTR-P-littoralis_Contig795:91286..91381Pylaiella littoralis U1_48UTRP-littoralis_Contig795 91287..91381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig795.26.1prot_P-littoralis_Contig795.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig795 90259..91286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig795.26.1

>prot_P-littoralis_Contig795.26.1 ID=prot_P-littoralis_Contig795.26.1|Name=mRNA_P-littoralis_Contig795.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
MHLKNFQVETLFYIFYSMPQDVLQAYAAQELHTREWRFQSVLKLWFKRVG
PADGNVPPNVEDIYFDHNEWQRQFFAGNVQMIASREPKPVLGTLAPQLGF
VVCEAGVL*
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mRNA from alignment at P-littoralis_Contig795:90259..91381+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig795.26.1 ID=mRNA_P-littoralis_Contig795.26.1|Name=mRNA_P-littoralis_Contig795.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1123bp|location=Sequence derived from alignment at P-littoralis_Contig795:90259..91381+ (Pylaiella littoralis U1_48)
ATGCACTTGAAGAACTTCCAGGTGGAGACGTTGTTCTACATCTTCTACTC
TATGCCGCAGGACGTATTGCAGGCAAGTGGGGTGGGGCAGAGGGAAGTTA
AGAGTCGGTCTGCCATGTGTATCAACGCAAGGGAGGCTTGGTGCGGTGCT
GCGTGGTTTGGTTTGGTTTAGATTGGTTTGGTTTTTGGTTTGGGTTTATG
TGGTTTGGTTTGGTTTAGATTGGTTTGGTTTGGTTTGGATTACTTGGTTT
GGTTTGGGTTTTGGTTCGGTTTTGATTGGTTTCGATCGGTAAGATTATGG
TTAGATTTGATTGGTTTGGTTTGGATTGGTTTTGTTCACTTGGTCCGTTT
TGTGTGGCGTTGAATTTGATTGCCCTCACACTGCTTTTAAAATGCATGCC
CTGAGTTTGTCACCGCACCCCCAAACGTTGCAAGTTCTCCTGGGGCTGTT
TCGCTCTATCGGCTGTTCATCTTTTTACATTGTGTCCATGTTCTGCTCTG
GTGCCTCTTTAGCTGGCAGTATTATGTGTGGCTCCCATTATACATGCAGG
ACAGTTTGTCAGTGGATTTCGTTCCTGATACAGTACTCCTCAAGATCAAA
GTGACTCGACTCCGTTTTGAGGCTTTGTACATGTTTGCCCGTGGAGCCCA
TTCGACCGGATTGCCAGCCAGCGCTTGATGGTACACTACGTGGAAGATGC
TCAATATTGCACGAAGATGAACTCGACCTCACTTCTCAGCCCCCCCCCCT
GCTTGGCCCATTTTCGTCGACAGGCATACGCGGCGCAAGAGTTGCACACC
CGCGAATGGCGGTTCCAATCCGTGCTGAAGCTGTGGTTCAAGAGGGTCGG
GCCTGCAGACGGAAACGTGCCGCCCAACGTGGAGGACATCTATTTCGACC
ACAACGAGTGGCAGCGGCAGTTCTTCGCCGGGAACGTTCAGATGATTGCG
AGTCGGGAACCGAAACCAGTCCTTGGAACGCTTGCGCCGCAATTGGGTTT
CGTAGTGTGTGAAGCAGGCGTTTTGTAAAAGGCGATTGGTTGCATGTGGC
GAGCCTCGCATGTATTGGTAACGTTGGTTTACACTGTCTCGGTAAAAGTT
TTTTTAGTCCTTGGACCGTTCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig795:90259..91381+

>mRNA_P-littoralis_Contig795.26.1 ID=mRNA_P-littoralis_Contig795.26.1|Name=mRNA_P-littoralis_Contig795.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig795:90259..91381+ (Pylaiella littoralis U1_48)
ATGCACTTGAAGAACTTCCAGGTGGAGACGTTGTTCTACATCTTCTACTC
TATGCCGCAGGACGTATTGCAGGCATACGCGGCGCAAGAGTTGCACACCC
GCGAATGGCGGTTCCAATCCGTGCTGAAGCTGTGGTTCAAGAGGGTCGGG
CCTGCAGACGGAAACGTGCCGCCCAACGTGGAGGACATCTATTTCGACCA
CAACGAGTGGCAGCGGCAGTTCTTCGCCGGGAACGTTCAGATGATTGCGA
GTCGGGAACCGAAACCAGTCCTTGGAACGCTTGCGCCGCAATTGGGTTTC
GTAGTGTGTGAAGCAGGCGTTTTGTAA
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