mRNA_P-littoralis_Contig79.104.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 224 bits (572), Expect = 1.980e-71 Identity = 111/141 (78.72%), Postives = 120/141 (85.11%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVSS----------SVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPPSFLEPCADRGGWLAETPPAVCVFLR 393
RRRLDRYCT PEAV+ L++AVAI+GCVLDMCGGPEDAVAQ F TCEVLTNDVSS S+LSFRD+F KAN GK+PDWVVTSPPYKGAVGFVKAALAVATKG ALKLP SFLEPCADRGGWL + PPAVC+FLR
Sbjct: 123 RRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLR 263
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 187 bits (474), Expect = 1.200e-57 Identity = 92/145 (63.45%), Postives = 107/145 (73.79%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVSS---------------SVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPPSFLEPCADRGGWLAETPPAVCVFL 390
RR LDRYCTSPEAV+AL AV + GCVLDMCGGP DA+A R G TC+V+TND+S+ S+ SF DFL A G+RPDWV+TSPPYKGA+ +VK+AL++A KG ALKLP SFLEPCADRGGWL PPAVCVF
Sbjct: 77 RRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI) HSP 1 Score: 178 bits (452), Expect = 1.420e-54 Identity = 90/141 (63.83%), Postives = 103/141 (73.05%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVSS----------SVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPPSFLEPCADRGGWLAETPPAVCVFLR 393
RR LDRYCTSPEA+DA AV I+GCVLDMCGGP DAVA R TCE+LTNDVSS S+ SF +DFL A SGKRP+WV TSPPY A+ FVKAA+++ATKG K+ FLEPCAD GGWL PP++CVFLR
Sbjct: 24 RRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLR 164
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 179 bits (453), Expect = 2.280e-54 Identity = 88/140 (62.86%), Postives = 103/140 (73.57%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVS----------SSVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPPSFLEPCADRGGWLAETPPAVCVFL 390
RR +DRYCTSP ++AL V+ISGCVLDMCGG +DAVA R TC+VLTNDV +S SF DDFL A+ G++PDW+VTSPPYKGA+ FVKAAL VA KG ALKLP SFLEPCADR GWL PPA+C+ +
Sbjct: 65 RRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMM 204
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE) HSP 1 Score: 160 bits (404), Expect = 1.480e-47 Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVSSSVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKL 312
RRRLDRYCTSP AVDALR AVAI+GCVLDMCGGPEDAVAQ FGGTC ++ +S++ F D+F+K N GK+PDWVVTSPPYKG+VGFV AALAVATKG ALKL
Sbjct: 42 RRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGGTC----TNLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKL 141
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE) HSP 1 Score: 155 bits (393), Expect = 1.750e-44 Identity = 85/147 (57.82%), Postives = 96/147 (65.31%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVSSSVLS----------------FRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPPSFLEPCADRGGWLAETPPAVCVFLR 393
RR LDRYCTS AV+AL DAV +SG VLDMCGGP+DAVA++ TCEV+TNDVSS + S F +FL ++P+ VV SPPYKGAV FVKAAL VA G ALK SFLEPC DR WL PP VCVFLR
Sbjct: 113 RRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLR 259
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE) HSP 1 Score: 147 bits (371), Expect = 3.500e-43 Identity = 72/102 (70.59%), Postives = 79/102 (77.45%), Query Frame = 1
Query: 88 MCGGPEDAVAQRFGGTCEVLTNDVSSSVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPPSFLEPCADRGGWLAETPPAVCVFLR 393
MCGGPEDAVA FGGTCEVLTNDVSS + A+ GK+PDWVVTSPPYKGAVGFVKA LAVA KG AL+LP SF +PCADRG WL + PP +C FLR
Sbjct: 1 MCGGPEDAVALGFGGTCEVLTNDVSSRL-------SPAHPGKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLR 95
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 145 bits (366), Expect = 3.290e-42 Identity = 72/112 (64.29%), Postives = 82/112 (73.21%), Query Frame = 1
Query: 88 MCGGPEDAVAQRFGGTCEVLTNDVSS----------SVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPPSFLEPCADRGGWLAETPPAVCVFLR 393
MCGGP DAVA R TCE+LTNDVSS S+ F +DFL A SGKRP+WVVTSPPY A+ FVKAA+++ATKG A K+P FLEPCADRGGWL PP+VCVFLR
Sbjct: 1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLR 112
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE) HSP 1 Score: 145 bits (367), Expect = 2.350e-41 Identity = 74/115 (64.35%), Postives = 87/115 (75.65%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVSS----------SVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLP 315
RR LDRYCTSPEAV+AL AV+I+GC+LD+CGGP DAVA R G TCEVLTNDVSS S+ SF DDF A+SGKRPDWVVTSP YK A+ FVKAA+++AT+G + P
Sbjct: 90 RRWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTVPAP 204
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: A0A6H5KZK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK3_9PHAE) HSP 1 Score: 134 bits (336), Expect = 1.110e-37 Identity = 68/91 (74.73%), Postives = 71/91 (78.02%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVSS----------SVLSFRDDFLKANSGKRPDWVVTSPP 243
RRRLDRYCTSP AVDALRDAV I GCVLDMCGGPE AVA FGGTCEVLTNDV S S+LSF DFLKA+ GK+PDWVVTSPP
Sbjct: 57 RRRLDRYCTSPGAVDALRDAVDIMGCVLDMCGGPEAAVALGFGGTCEVLTNDVGSRLSPDSNLDASLLSFPSDFLKAHPGKQPDWVVTSPP 147 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig79.104.1 >prot_P-littoralis_Contig79.104.1 ID=prot_P-littoralis_Contig79.104.1|Name=mRNA_P-littoralis_Contig79.104.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTback to top mRNA from alignment at P-littoralis_Contig79:439309..439880+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig79.104.1 ID=mRNA_P-littoralis_Contig79.104.1|Name=mRNA_P-littoralis_Contig79.104.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=572bp|location=Sequence derived from alignment at P-littoralis_Contig79:439309..439880+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig79:439309..439880+ >mRNA_P-littoralis_Contig79.104.1 ID=mRNA_P-littoralis_Contig79.104.1|Name=mRNA_P-littoralis_Contig79.104.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig79:439309..439880+ (Pylaiella littoralis U1_48)back to top |