mRNA_P-littoralis_Contig787.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig787.27.1
Unique NamemRNA_P-littoralis_Contig787.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig787.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig787contigP-littoralis_Contig787:69669..71496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size354
Hectar predicted targeting categoryother localisation
Exons3
Cds size225
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791612.394883-UTR-P-littoralis_Contig787:69668..697441680791612.394883-UTR-P-littoralis_Contig787:69668..69744Pylaiella littoralis U1_48UTRP-littoralis_Contig787 69669..69744 -
1680791612.4613824-UTR-P-littoralis_Contig787:71443..714961680791612.4613824-UTR-P-littoralis_Contig787:71443..71496Pylaiella littoralis U1_48UTRP-littoralis_Contig787 71444..71496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791612.4137857-CDS-P-littoralis_Contig787:69744..698021680791612.4137857-CDS-P-littoralis_Contig787:69744..69802Pylaiella littoralis U1_48CDSP-littoralis_Contig787 69745..69802 -
1680791612.4291353-CDS-P-littoralis_Contig787:70374..705101680791612.4291353-CDS-P-littoralis_Contig787:70374..70510Pylaiella littoralis U1_48CDSP-littoralis_Contig787 70375..70510 -
1680791612.4471943-CDS-P-littoralis_Contig787:71412..714431680791612.4471943-CDS-P-littoralis_Contig787:71412..71443Pylaiella littoralis U1_48CDSP-littoralis_Contig787 71413..71443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig787.27.1prot_P-littoralis_Contig787.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig787 69745..71443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig787.27.1

>prot_P-littoralis_Contig787.27.1 ID=prot_P-littoralis_Contig787.27.1|Name=mRNA_P-littoralis_Contig787.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=75bp
MGHRALGTSVGPGDARPVQDASAPPAAAPPVHPGDLVSTTKTMGPRRSIR
PWGSQRTLHASPRPCRMRTSPRTS*
back to top

mRNA from alignment at P-littoralis_Contig787:69669..71496-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig787.27.1 ID=mRNA_P-littoralis_Contig787.27.1|Name=mRNA_P-littoralis_Contig787.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1828bp|location=Sequence derived from alignment at P-littoralis_Contig787:69669..71496- (Pylaiella littoralis U1_48)
CCCAATGTACGTGTGCTGCTAAGAGAGTTACACCTCCGACCTCCCGTCAC
ACGATGGGACATCGAGCTCTTGGTACTTCTGTTGGTGAGTGATTTCCTGC
TGTGTAATCGGTCATGCGAGATAATGCACACTTTTCTTCAACGGCACATC
TCTGACTCTCTTATCCTGTGCGACGTATCATAGCCGCCCGCTTGCTCAAG
CATTATCGTATCGTATGTATACAACAGTGTGCTGCTGTACAGCAGCACAT
CAGTATACCAGATGCGTGGAGCAGAGAGCATGCGGCCATGCAGTGTGGTC
GAGAGTGTGTGGACTTCATAGCAAACGGGGTGTATTGTACTTTGATCTCA
GGCCAGTGTGTCGCGTATGATCTAACTACACTGCTGTGTGCAGTGTGTTT
GTTTTTTTTTTTTTCGCGTATGATCTAACTACACTGCTGTCGTACCGCAG
TTACAGCAGTCAGTCTAGTGTCGCACACAGACAGCAATCATACTCGTACT
CTGTACGGGTAGTTTCGTCTTGCACCAGCAGAACCTTGCCCCTCGTTGTA
TACTTTTGTGCTCGGTGTTGGGGATTGTCGCAAGATATGTACCACCGGTG
TATGTATATAGGTTCATCATGAGCCCATGCGTAGTTCAACCTGCTGTAAA
CGACACAAGTGTGCAGAGGAGGGATGCGACTTGTTGCTTCCCTGGTAGTG
ATGAACTGCTGCCACACCGTTGTTGTGATTCGAATACCGCTCCCCCGATT
TAGAGATGGAGGCGTTTTGGGTAGGATCAAGTTGAGCTCTGATCTTGGTA
CCCACGTGGAGGCGTTTTCTGTTCAAATTCGGACCACAATTGAGCTCCCG
TTTCCCCGTTTCCTCCCCCACCACAATCACTCGCTGCTCATCTTGTCCTC
TGCCCAAATAAATTTGCCAACTTCGTTCTCATCATGTCCGCCCAACTTCG
TGACCTTGGTCTAACAAACCGCAGCAACACCAGCAGGGCCGGGCGACGCA
CGTCCAGTTCAGGACGCAAGCGCACCACCAGCAGCAGCTCCGCCGGTTCA
TCCCGGCGACCTCGTCTCAACGACGAAAACGATGGGTCCACGTCGCAGCA
TCCGGCCCTGGGGCTCGCAAAGGTAAGTAACGGGTGTTTGGGAGTGATAC
TGCCGTATTTGTAGGGACTAGGAATGAGAGAAAGAGAGAGAGAGAGAGAG
AGAGAGAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATCACG
AGCATGCATGAGACCCCAAAGAGGCTAGATTGATCTGTCGTGGCGAAGAA
CAGCCTGCGAATGTGGAGAGGCTAGATTGTGTTTTGGATGGCGTAGACCA
GTCTGCGGGTGTGCTGTAGAGGTGGCAGTTTTTTTTGGGTGGCTGACAGC
AGTCTGCCACTGTTTGTGGGGTGGTGAAAGCATGCAAGGGTAACCGTGTC
GGGGGTGTGTGCTGTGGTGTCACCTATTCTGGGCGTGGTAGTGTTTGTCT
CAACATAACCCTGAGACGGATGATCACTCTTTGAACCCTCTTGGAGTACC
GGCAAACTCGCCACACCTCATGTGCTTGTAACCCCGCTTACACAAAACGT
GTGTCACCATTGATTTCGTACTTTAAGTCAACAGAACACGCCTCCACACC
GAACGCAAACCTCTACTGCCCCCCTCCTCCCTTGGTGCTACTAGGACATT
GCACGCAAGTCCAAGACCATGCCGAATGAGGACGTCGCCGCGTACTTCAT
GAAAGAAGTGGGGCAGACGTGGTCTCCGGCGCTCAAGACGTTGATCGCCG
TCAGCCTCCTCAAGGAGTCAGGGCTACC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig787:69669..71496-

>mRNA_P-littoralis_Contig787.27.1 ID=mRNA_P-littoralis_Contig787.27.1|Name=mRNA_P-littoralis_Contig787.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=225bp|location=Sequence derived from alignment at P-littoralis_Contig787:69669..71496- (Pylaiella littoralis U1_48)
ATGGGACATCGAGCTCTTGGTACTTCTGTTGGGCCGGGCGACGCACGTCC
AGTTCAGGACGCAAGCGCACCACCAGCAGCAGCTCCGCCGGTTCATCCCG
GCGACCTCGTCTCAACGACGAAAACGATGGGTCCACGTCGCAGCATCCGG
CCCTGGGGCTCGCAAAGGACATTGCACGCAAGTCCAAGACCATGCCGAAT
GAGGACGTCGCCGCGTACTTCATGA
back to top