mRNA_P-littoralis_Contig785.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig785.21.1
Unique NamemRNA_P-littoralis_Contig785.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig785.21.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 5.080e-36
Identity = 92/173 (53.18%), Postives = 111/173 (64.16%), Query Frame = 1 
Query:    1 AVLLTPSYNNKGYLMDLGLTLADEQHLPASKKHLAPTTETDAEAKYNRRWAEIKAWAVKAALKANSRAASSGSGGQSSSKRPRMMDFTPRAK-EPRFASYGRGGPRRSTED-GEGVDSEDSEEQQLSLLVDAEIERYNALYIRADELDTRDILPWWRETGRKMFPYLAPVAQQ 513
            +VLLTPSY +  +L    LT AD QHL   K HLAPT +T+ + K N  WA+IKA A +AA K +S A ++  GGQ   KR      TP  K  PRFAS  R   R  TED GEG    DSE++ L   V  E+ER+ ALY+ A+ELDTR++LPWWR TGRKMFP LAPVAQQ
Sbjct:  361 SVLLTPSYKDTNFLQAHALTAADSQHLDQRKAHLAPTIDTEVDQKLNDCWADIKARASEAARKKHS-ARATAEGGQPPLKRL----STPATKARPRFASLARNRVRGDTEDVGEG----DSEDKVLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPCLAPVAQQ 524
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BLAST of mRNA_P-littoralis_Contig785.21.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.860e-34
Identity = 80/172 (46.51%), Postives = 112/172 (65.12%), Query Frame = 1 
Query:    1 AVLLTPSYNNKGYLMDLGLTLADEQHLPASKKHLAPTTETDAEAKYNRRWAEIKAWAVKAALKANSRAASSGSGGQSSSKRPRMMDFTPRA-KEPRFASYGRGGPRRSTEDGEGVDSEDSEEQQLSLLVDAEIERYNALYIRADELDTRDILPWWRETGRKMFPYLAPVAQQ 513
            AVLLTP +N   YL  L L+ AD ++L   KK LAPT +++  AK +  WA+IK  A +AA + N R+ S   G Q   KR R    T  A ++ RF+ +GRG  R ST+D   +  EDSE+++L  +V  E+E Y +L+I+ADELD R++LPWW+ TG+ +FP+LAPVAQQ
Sbjct:   45 AVLLTPPFNTGKYLEALRLSAADAEYLSIGKKGLAPTMDSEVTAKLDGCWADIKRRAWEAARERNRRSESLDDGVQPLHKRFRGESSTSSATRKSRFSLFGRGDARSSTDD---MADEDSEDRKLGEVVAGELEHYKSLFIKADELDCREVLPWWKRTGKNIFPHLAPVAQQ 213
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BLAST of mRNA_P-littoralis_Contig785.21.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.350e-16
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:  370 LSLLVDAEIERYNALYIRADELDTRDILPWWRETGRKMFPYLAPVAQQ 513
            L   V  EIERY++LYI A+ELDTR+ILPWWR+TGRK FPYLAPVAQQ
Sbjct:    4 LMQHVSQEIERYHSLYITAEELDTREILPWWRQTGRKTFPYLAPVAQQ 51
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BLAST of mRNA_P-littoralis_Contig785.21.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.970e-13
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:  394 IERYNALYIRADELDTRDILPWWRETGRKMFPYLAPVAQQ 513
            I+R+ ALY+ A+ELDTR++LPWWR TGRKMFPYLAPVAQQ
Sbjct:   87 IDRFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQ 126
[Close]
BLAST of mRNA_P-littoralis_Contig785.21.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.860e-9
Identity = 57/174 (32.76%), Postives = 82/174 (47.13%), Query Frame = 1 
Query:    7 LLTPSYNNKGYLMDLGLTLADEQHLPASKKHLAPTTETDAEAKYNRRWAEIKAWAVKAALKANSRAASSGSGGQSSS--KRPRMM---DFTPRAKEPRFASYGRGGPRRSTEDGEGVDSEDSEEQQLSLLVDAEIERYNALYIRADELDTRDILPWWRETGRKMFPYLAPVAQQ 513
            LLTP Y++  ++  + LT  +  +LP     L PTT+ D E K    W  IK  A++A  +  ++A  SG GG  +   KR R          A E  FA     G    +  G+  D          L V  EI+R  AL + + +L  RD+L +W+++GR  FP L  VAQQ
Sbjct:  245 LLTPPYSSGIHISAMKLTEEEGDYLPTGLTVLTPTTDEDVEDKKAEAWGMIKKRAIQAVKEDQAQANGSGDGGGDAGPFKRARTSGNGSARNDAGEDHFAVLCTAGAVEQSGSGDDGD----------LSVAGEIQRSRALQMNSSDLQPRDVLNYWKQSGRHAFPALNYVAQQ 408
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig785.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KZ46_9PHAE5.080e-3653.18Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE2.860e-3446.51Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KSA7_9PHAE7.350e-1675.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE1.970e-1377.50Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5KFQ8_9PHAE1.860e-932.76Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig785contigP-littoralis_Contig785:126959..127756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size516
Hectar predicted targeting categoryother localisation
Exons2
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791611.7538276-CDS-P-littoralis_Contig785:126958..1273901680791611.7538276-CDS-P-littoralis_Contig785:126958..127390Pylaiella littoralis U1_48CDSP-littoralis_Contig785 126959..127390 +
1680791611.7693613-CDS-P-littoralis_Contig785:127674..1277551680791611.7693613-CDS-P-littoralis_Contig785:127674..127755Pylaiella littoralis U1_48CDSP-littoralis_Contig785 127675..127755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig785.21.1prot_P-littoralis_Contig785.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig785 126959..127755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig785.21.1

>prot_P-littoralis_Contig785.21.1 ID=prot_P-littoralis_Contig785.21.1|Name=mRNA_P-littoralis_Contig785.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=171bp
AVLLTPSYNNKGYLMDLGLTLADEQHLPASKKHLAPTTETDAEAKYNRRW
AEIKAWAVKAALKANSRAASSGSGGQSSSKRPRMMDFTPRAKEPRFASYG
RGGPRRSTEDGEGVDSEDSEEQQLSLLVDAEIERYNALYIRADELDTRDI
LPWWRETGRKMFPYLAPVAQQ
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mRNA from alignment at P-littoralis_Contig785:126959..127756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig785.21.1 ID=mRNA_P-littoralis_Contig785.21.1|Name=mRNA_P-littoralis_Contig785.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=798bp|location=Sequence derived from alignment at P-littoralis_Contig785:126959..127756+ (Pylaiella littoralis U1_48)
GCCGTGCTTCTCACCCCGTCATACAACAACAAAGGCTACTTGATGGACCT
CGGACTCACGTTGGCCGACGAGCAGCACCTCCCCGCCAGTAAGAAGCACT
TGGCTCCTACGACCGAGACAGACGCGGAAGCAAAGTACAACAGGCGCTGG
GCGGAGATCAAAGCTTGGGCTGTGAAGGCCGCGCTCAAGGCAAACTCGCG
CGCTGCATCAAGCGGCAGCGGCGGTCAATCGTCTTCCAAGCGCCCCCGCA
TGATGGACTTCACCCCTCGCGCCAAGGAGCCTAGGTTTGCATCGTACGGG
CGAGGCGGGCCCCGCCGCAGCACTGAAGACGGGGAGGGCGTCGACAGTGA
GGACAGTGAGGAGCAGCAGTTGTCCCTGCTAGTGGACGCAGAGATCGAGC
GGTACAACGCACTGTACATCAGAGCAGACGAGGTATGCAGTGTTGAAAAT
GGGTGTGCTGAGGAAGAGAAACCAAAAATGCAAGGGCGATGTGGGGCGCA
TGTGTTGCATACAATAGGTCTAGACGCGATTGATTGTTGTTTTTGTCTGT
TGATGTGTTACCTTGTCGGTGCAGATCTGTTTTGTTTTGCCTCGTATCCT
CGTATGCCATCATTCTACTTTCTGTGCGCAGCATTTTCATTTTGGTATAA
AACGTTAATCTATTTGTATTTGTATTTTTATTTTCGTTGCCCTATGCCTC
ATGTTTCTTTTTGCAGTTGGACACTCGGGACATACTTCCTTGGTGGCGGG
AGACCGGCCGGAAGATGTTCCCCTACCTCGCACCCGTGGCGCAGCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig785:126959..127756+

>mRNA_P-littoralis_Contig785.21.1 ID=mRNA_P-littoralis_Contig785.21.1|Name=mRNA_P-littoralis_Contig785.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=513bp|location=Sequence derived from alignment at P-littoralis_Contig785:126959..127756+ (Pylaiella littoralis U1_48)
GCCGTGCTTCTCACCCCGTCATACAACAACAAAGGCTACTTGATGGACCT
CGGACTCACGTTGGCCGACGAGCAGCACCTCCCCGCCAGTAAGAAGCACT
TGGCTCCTACGACCGAGACAGACGCGGAAGCAAAGTACAACAGGCGCTGG
GCGGAGATCAAAGCTTGGGCTGTGAAGGCCGCGCTCAAGGCAAACTCGCG
CGCTGCATCAAGCGGCAGCGGCGGTCAATCGTCTTCCAAGCGCCCCCGCA
TGATGGACTTCACCCCTCGCGCCAAGGAGCCTAGGTTTGCATCGTACGGG
CGAGGCGGGCCCCGCCGCAGCACTGAAGACGGGGAGGGCGTCGACAGTGA
GGACAGTGAGGAGCAGCAGTTGTCCCTGCTAGTGGACGCAGAGATCGAGC
GGTACAACGCACTGTACATCAGAGCAGACGAGTTGGACACTCGGGACATA
CTTCCTTGGTGGCGGGAGACCGGCCGGAAGATGTTCCCCTACCTCGCACC
CGTGGCGCAGCAG
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