mRNA_P-littoralis_Contig782.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig782.41.1
Unique NamemRNA_P-littoralis_Contig782.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig782.41.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.640e-46
Identity = 79/103 (76.70%), Postives = 94/103 (91.26%), Query Frame = 1 
Query:  217 NFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVN 525
            NFGRSEYAR+ GLDK+AGYI+SADDSKLEEL++++RFF+KWR +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N
Sbjct:  551 NFGRSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFIN 653
[Close]
BLAST of mRNA_P-littoralis_Contig782.41.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.800e-42
Identity = 73/103 (70.87%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:  217 NFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVN 525
            NFGRS+YARK GLDK  GY  SADDSKLE LMDILRFF++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+  L D P ++N
Sbjct:   38 NFGRSDYARKNGLDKMVGYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFIN 138
[Close]
BLAST of mRNA_P-littoralis_Contig782.41.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 5.330e-39
Identity = 70/104 (67.31%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:  214 RNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVN 525
            RNFGRS+YARK GLDK   YI SADDSKLEE+MDIL  F++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRY+FE+DS FK+  L D P ++N
Sbjct:  427 RNFGRSDYARKNGLDKMVSYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFIN 530
[Close]
BLAST of mRNA_P-littoralis_Contig782.41.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.430e-30
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:  217 NFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFV 447
            NFGRS+YARK GLDK  GYI SADDSKLEELMDILRFF++WR +LE + TLG   WK +FIT++SWTDIRV ILG V
Sbjct:   25 NFGRSDYARKNGLDKMVGYIRSADDSKLEELMDILRFFDEWRASLEARPTLGGRAWKAYFITDHSWTDIRVCILGTV 101
[Close]
BLAST of mRNA_P-littoralis_Contig782.41.1 vs. uniprot
Match: A0A6H5JZW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW9_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.160e-29
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:  268 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTP 513
            GYI S DDSKL+ELMDIL FF++WR +LE + TLGD  WK HFIT++ WTD RV ILG V MCRYL E DSRFK+S L   P
Sbjct:    3 GYIRSTDDSKLDELMDILWFFDEWRASLEARPTLGDGAWKAHFITDHLWTDSRVCILGTVRMCRYLIEKDSRFKISPLNMFP 84
[Close]
BLAST of mRNA_P-littoralis_Contig782.41.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.100e-22
Identity = 53/109 (48.62%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:  217 NFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEK---TTLGD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLR-DTPRYVNP 528
            N+GRS+  RK G  K  G I S + + ++ L++IL FF+ W+  LE K   +  GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++  L  +  R+++P
Sbjct:   66 NYGRSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSP 174
[Close]
BLAST of mRNA_P-littoralis_Contig782.41.1 vs. uniprot
Match: A0A6H5JNK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 6.510e-20
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:  268 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVS 450
            GYI SAD SKLE LMDILRFF++WR +LE + TLGD TW+ HFIT++SWTDI+V ILG V+
Sbjct:    3 GYIRSADRSKLE-LMDILRFFDEWRASLEARPTLGDGTWEAHFITDHSWTDIQVCILGTVA 62
[Close]
BLAST of mRNA_P-littoralis_Contig782.41.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.160e-19
Identity = 44/86 (51.16%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  220 FGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 477
            +G +E  RK+G +K+ GYIT AD   L  L++IL FF+ W+ +LE     G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+
Sbjct:  476 YGLNEVERKQGGNKRKGYITGADSPLLGRLLEILEFFDSWQVSLEAH--FGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDE 559
[Close]
BLAST of mRNA_P-littoralis_Contig782.41.1 vs. uniprot
Match: A0A6H5K095_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K095_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 5.500e-16
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:  265 AGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYS 411
            AGYI SADDSKLEELMDILRF  +WR +LE ++TLGD  WK HFIT++S
Sbjct:    2 AGYIRSADDSKLEELMDILRFLGEWRASLEARSTLGDCAWKAHFITDHS 50
[Close]
BLAST of mRNA_P-littoralis_Contig782.41.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.150e-5
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:  247 KGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLE----EKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 477
            K +D +   ITS D   L+ L++IL +F+ W  +L         L D+     F+ + +W D+R++ILGFV+M RY+F DD
Sbjct:  502 KRIDIRKSCITSKDSPLLDRLLEILEWFDTWWQDLNLFGGSDLALDDL-----FLPDQTWDDLRLTILGFVAMTRYVFGDD 577
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig782.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE1.640e-4676.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE1.800e-4270.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE5.330e-3967.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH17_9PHAE2.430e-3072.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZW9_9PHAE1.160e-2965.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE1.100e-2248.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK0_9PHAE6.510e-2068.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.160e-1951.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K095_9PHAE5.500e-1671.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE2.150e-537.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig782contigP-littoralis_Contig782:118230..120663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size530
Hectar predicted targeting categoryother localisation
Exons3
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791609.576985-CDS-P-littoralis_Contig782:118229..1185431680791609.576985-CDS-P-littoralis_Contig782:118229..118543Pylaiella littoralis U1_48CDSP-littoralis_Contig782 118230..118543 -
1680791609.5875907-CDS-P-littoralis_Contig782:119448..1195271680791609.5875907-CDS-P-littoralis_Contig782:119448..119527Pylaiella littoralis U1_48CDSP-littoralis_Contig782 119449..119527 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791609.6035388-UTR-P-littoralis_Contig782:119527..1195371680791609.6035388-UTR-P-littoralis_Contig782:119527..119537Pylaiella littoralis U1_48UTRP-littoralis_Contig782 119528..119537 -
1680791609.6132233-UTR-P-littoralis_Contig782:120538..1206631680791609.6132233-UTR-P-littoralis_Contig782:120538..120663Pylaiella littoralis U1_48UTRP-littoralis_Contig782 120539..120663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig782.41.1prot_P-littoralis_Contig782.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig782 118230..119527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig782.41.1

>prot_P-littoralis_Contig782.41.1 ID=prot_P-littoralis_Contig782.41.1|Name=mRNA_P-littoralis_Contig782.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MLSTLEKDEGGPRTRSHTTPTTRETTRNFGRSEYARKKGLDKKAGYITSA
DDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSI
LGFVSMCRYLFEDDSRFKVSRLRDTPRYVNP
back to top

mRNA from alignment at P-littoralis_Contig782:118230..120663-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig782.41.1 ID=mRNA_P-littoralis_Contig782.41.1|Name=mRNA_P-littoralis_Contig782.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2434bp|location=Sequence derived from alignment at P-littoralis_Contig782:118230..120663- (Pylaiella littoralis U1_48)
TCCATCACCGTCGCACGCGACCAAGCATGCGACGACCGCGACACCAACTT
CTGATCTACCTGCTGCACGTGCTACCATCAGTACGAGTGAGACTCTGTGC
CAGGGCAGAGTTTTGTTCTTTCACGGTGAGTCTTGTTGTCATGACCTCCT
CAGGGCAGCACCCCGGGGTAGTTCCCTACCGAATTCCGACTACCCTTCGT
GTGTCGCTAGACTGCTTAGGTTTTTTCGCGGGCGCGCGAATCCACGGCCC
CCGCGAATCTGCTGGGCCCCTCCTATTTTTTCGCCGGTGCGCAGCACTGT
TCCTCGCAAGCCGTTTCACCAATGTCAGCTGACTGCGGTTCAGGCTTCCG
GGCAATTTCGAATGGGTGTAGACTAGTCTTACACGTGACAAATTCTTCGT
CCTGCCTGAACCCTTCCTCACTGCCGCGAACATGGATTGACTTATGCGCA
CACACTCTTATCATTCGAAGATAACAATATGCGGACCATGACCATTGCTC
CCATTCCCTGTCCTCCACAGCAGTACTTCCTCAAAGAGGCAGCGTCCCAC
AAGAGGAAATGACGTAGAACACCACCCCTCTTGCGCAAATATGAATCTAC
CGTGCTCGATGTTTCGCGCGCTAGTGGTTTCATACTTTCCACCACTATTA
ATAGCTGTTAATTTGCTTGCATGATTTGCCCCCTTGTTTTGGCGAGCGTT
AAAGGCTGTATTTCAGCTGTTGTTTTTGTCTCATTGAAAACCGTTCCGTT
CTCTCAATCCAGTACCTCCAGCTGTCCGTGCTCTTCCAACACTTGCGTCG
GGCGATTCCCGTGGTCACAAGCTAACTACCGTAAGAAAAGGTATTCTAAA
ATATAACACAATAAAAAATGGACCACGGAGCCGAAAGATCAGCAAAGCAG
TAGAAAGAAGCAGCAGAAGCATATTTAAAATATAACTCAACGCATGCCGT
GCTCAAGAGGCGGGGAATGGACGGGGAGTTTGTGCATCTTAGGCGATAGG
TTTCTCAATGGCAATCAGGTATAACCTCTTGTCGCGTGAACACATGTGCA
TGCCTATTCATAAAAGCCGATGAATTTCGAATAATTCCCATTTTTATTTC
GTTCACACCGCAACGGCTACCGACAGGCTGCCGTCGATGCTTTCGACGCT
GGAGAAGGATGAGGGAGGGCCGAGGACGCGATCGCACACCACGCCCACCA
CGAGAGAGACCACGAGCAAGTCTACTTCACTATAGAGTCCGGGGTGGGGG
TAGCGGAGCATCTCTCCACCGTGAAGTAATGTTGTTGAGGAACACACAGA
GTTCCTCATAGCTTTTTTAATAGGTGTCCCGCGTTTCCTTCCCCTGTCGT
CCTCCCCACTCCCGCCCCTCGACCCTCGTACCTCCGAAAAACCCGGAAAT
ACCGGCGAACGCCCTGTCTCCCGGCGCAGCTCGTGACGGAGATTTTTTTT
CCACAAAACCTTGAGCTTGATTGTTGAGTTTTCATGGGCTAAAAACCCGC
CACACTTGTGTTCTAACGGGATTGAACAGATATCGTAATTTGCCAATAAA
ATCAGTTATTATTGTTTTCAAATGAGTCTCTTAAACAGAGATATCGCACC
AAAACAGCACATCGAAGACCAATATACTGTTTTATTCGAGACAACTTTTC
TTTCGATTTCAAAATGGAGTGCGGCAAACTATTCCTCTCATCATTGCCGC
GAACTGTTTGTGGCGTTGTTGGTGTTGGTGCAGGGGGGGGTGTTTGTGCC
GTTTTTGTGTGATAAATGTGCTGTGTAATGGCTGCAACGGATAGATTTCG
TGACATATTATGCGGATGCCGGGGTGCGGAGTGCAGGATGGGGGCTCAGT
GGTGAGTTTTGGGGCCCCGTGGAACGGTTTTTGCAACAACTGATGCAATT
AGCCAAAAACATAAATAACTCTGCAGCTATGTATCGACATATCTCGACGA
GGCGATCACTAATATTGTTGTTTCACGTCCCAACGCGATTGAACAAAAAG
GAGAGCACGGACCTACTTGTTTTTTTTATATATATATTTCCTCGCGCAAT
GTACACACTCTGTGCGCGTCGTTTGTCTCTTCCCACACGGCCCCATGTAT
GTGTATGTGTATATATTCAGGAAACTTCGGCCGCTCGGAGTACGCGCGCA
AGAAAGGCCTCGACAAGAAAGCGGGCTACATTACATCGGCCGACGACTCC
AAACTAGAAGAACTCATGGACATCTTGCGTTTTTTCGAGAAGTGGCGGTG
CAATCTGGAGGAGAAGACGACGCTGGGCGACGTCACCTGGAAGAAGCACT
TCATCACGGAGTACTCGTGGACCGACATCCGGGTGTCCATCCTTGGCTTC
GTCAGTATGTGCCGATACTTGTTCGAGGATGATTCGAGGTTCAAGGTCTC
CCGCCTGCGCGACACGCCCCGCTACGTCAACCCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig782:118230..120663-

>mRNA_P-littoralis_Contig782.41.1 ID=mRNA_P-littoralis_Contig782.41.1|Name=mRNA_P-littoralis_Contig782.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig782:118230..120663- (Pylaiella littoralis U1_48)
ATGCTTTCGACGCTGGAGAAGGATGAGGGAGGGCCGAGGACGCGATCGCA
CACCACGCCCACCACGAGAGAGACCACGAGAAACTTCGGCCGCTCGGAGT
ACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACATCGGCC
GACGACTCCAAACTAGAAGAACTCATGGACATCTTGCGTTTTTTCGAGAA
GTGGCGGTGCAATCTGGAGGAGAAGACGACGCTGGGCGACGTCACCTGGA
AGAAGCACTTCATCACGGAGTACTCGTGGACCGACATCCGGGTGTCCATC
CTTGGCTTCGTCAGTATGTGCCGATACTTGTTCGAGGATGATTCGAGGTT
CAAGGTCTCCCGCCTGCGCGACACGCCCCGCTACGTCAACCCG
back to top