mRNA_P-littoralis_Contig78.78.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig78.78.1
Unique NamemRNA_P-littoralis_Contig78.78.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig78contigP-littoralis_Contig78:352332..353220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size889
Hectar predicted targeting categoryother localisation
Exons1
Cds size507
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791602.403779-UTR-P-littoralis_Contig78:352331..3526231680791602.403779-UTR-P-littoralis_Contig78:352331..352623Pylaiella littoralis U1_48UTRP-littoralis_Contig78 352332..352623 -
1680791602.43513-UTR-P-littoralis_Contig78:353130..3532201680791602.43513-UTR-P-littoralis_Contig78:353130..353220Pylaiella littoralis U1_48UTRP-littoralis_Contig78 353131..353220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791602.4201984-CDS-P-littoralis_Contig78:352623..3531301680791602.4201984-CDS-P-littoralis_Contig78:352623..353130Pylaiella littoralis U1_48CDSP-littoralis_Contig78 352624..353130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig78.78.1prot_P-littoralis_Contig78.78.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig78 352624..353130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig78.78.1

>prot_P-littoralis_Contig78.78.1 ID=prot_P-littoralis_Contig78.78.1|Name=mRNA_P-littoralis_Contig78.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp
MDMSFPRFPNFELCGEGDFARTGDRQTCRQVDVNLRYHGARYHTQEAGLS
SASERSGRRRLQHLFCQRRRQRRRRCHHKIYISVLVETVRWHPPHGSVQS
EKRKKRPSRTSCDAKTRTMLPLPVLRELHSFFVLFFPLAPPLLFCFSSGP
GGGGGEAAFGQKARQGTY*
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mRNA from alignment at P-littoralis_Contig78:352332..353220-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig78.78.1 ID=mRNA_P-littoralis_Contig78.78.1|Name=mRNA_P-littoralis_Contig78.78.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=889bp|location=Sequence derived from alignment at P-littoralis_Contig78:352332..353220- (Pylaiella littoralis U1_48)
CGGATGGGTTGGGTGTGAAGCACTTGTCGGTTGGTTGGCTAGTGGGTGGG
TCGATAGGGTGGGGTCGGGAACGTGAGCCTCTCGTGTACGATGGATATGT
CATTCCCTCGTTTCCCAAATTTCGAGTTGTGTGGGGAGGGGGATTTCGCC
CGTACCGGAGACAGGCAGACATGCAGACAGGTAGACGTGAATCTCCGCTA
TCATGGCGCGCGATATCATACCCAAGAGGCGGGTCTTTCGAGCGCCTCTG
AACGATCGGGACGACGACGTTTACAGCATTTGTTTTGCCAACGACGACGA
CAACGACGACGAAGATGTCACCATAAGATTTACATATCTGTACTTGTAGA
GACAGTCAGGTGGCACCCCCCCCATGGCTCGGTTCAGTCCGAAAAACGTA
AGAAGCGTCCCTCACGCACTTCGTGTGACGCAAAAACACGCACCATGCTT
CCTCTGCCTGTCCTTCGGGAACTGCACAGCTTTTTTGTGTTGTTTTTTCC
TCTCGCCCCACCCCTATTGTTTTGCTTTTCATCGGGACCCGGGGGAGGGG
GGGGGGAAGCGGCGTTCGGGCAAAAGGCCCGGCAAGGTACTTACTGAGAA
TGTAGAGCACGTGGATATTTTTTCGAGTGACTTATTTTACCATACAATGG
ACTGGGGTAAGCGGGGCCCGGTGCTTGGATATCAGTGGTTGAGTACCACG
GGCGGGGGTCTCGGTGGATCTTGACGGCATTCTTGTTGAGCCCCGGCTAT
TTGACATACATGGAAGGGATGACATACATTGAAGGGAGGAACTCTGGCTT
TTTTGGTTTCTGGATGAGAGAGGGCCGCGTCTCATTGTTTGCCAGAAGAA
AGTTGCCTTCCAGAATTTGTGAAAAGAACACTAAAGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig78:352332..353220-

>mRNA_P-littoralis_Contig78.78.1 ID=mRNA_P-littoralis_Contig78.78.1|Name=mRNA_P-littoralis_Contig78.78.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig78:352332..353220- (Pylaiella littoralis U1_48)
ATGGATATGTCATTCCCTCGTTTCCCAAATTTCGAGTTGTGTGGGGAGGG
GGATTTCGCCCGTACCGGAGACAGGCAGACATGCAGACAGGTAGACGTGA
ATCTCCGCTATCATGGCGCGCGATATCATACCCAAGAGGCGGGTCTTTCG
AGCGCCTCTGAACGATCGGGACGACGACGTTTACAGCATTTGTTTTGCCA
ACGACGACGACAACGACGACGAAGATGTCACCATAAGATTTACATATCTG
TACTTGTAGAGACAGTCAGGTGGCACCCCCCCCATGGCTCGGTTCAGTCC
GAAAAACGTAAGAAGCGTCCCTCACGCACTTCGTGTGACGCAAAAACACG
CACCATGCTTCCTCTGCCTGTCCTTCGGGAACTGCACAGCTTTTTTGTGT
TGTTTTTTCCTCTCGCCCCACCCCTATTGTTTTGCTTTTCATCGGGACCC
GGGGGAGGGGGGGGGGAAGCGGCGTTCGGGCAAAAGGCCCGGCAAGGTAC
TTACTGA
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