mRNA_P-littoralis_Contig78.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig78.37.1
Unique NamemRNA_P-littoralis_Contig78.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig78contigP-littoralis_Contig78:177615..178658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size294
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791602.1438603-CDS-P-littoralis_Contig78:177614..1777111680791602.1438603-CDS-P-littoralis_Contig78:177614..177711Pylaiella littoralis U1_48CDSP-littoralis_Contig78 177615..177711 +
1680791602.1542456-CDS-P-littoralis_Contig78:178461..1786581680791602.1542456-CDS-P-littoralis_Contig78:178461..178658Pylaiella littoralis U1_48CDSP-littoralis_Contig78 178462..178658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig78.37.1prot_P-littoralis_Contig78.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig78 177615..178658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig78.37.1

>prot_P-littoralis_Contig78.37.1 ID=prot_P-littoralis_Contig78.37.1|Name=mRNA_P-littoralis_Contig78.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
SWAISTTSSAHVDCPSEVPKANCPGGSMAAPEGDTSSCRENVLGPRPHGK
ETVDVLTRQASPVPSPRHPAQKPRLRHQAGSNVVQYATWLFQNPRSRH
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mRNA from alignment at P-littoralis_Contig78:177615..178658+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig78.37.1 ID=mRNA_P-littoralis_Contig78.37.1|Name=mRNA_P-littoralis_Contig78.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1044bp|location=Sequence derived from alignment at P-littoralis_Contig78:177615..178658+ (Pylaiella littoralis U1_48)
TCTTGGGCGATTTCGACTACGTCGTCTGCACATGTGGACTGCCCCTCGGA
GGTCCCCAAGGCGAACTGTCCCGGCGGAAGCATGGCGGCTCCTGAAGGTG
AATATCTTCGCAATGTACTCAGACAAGTCCCCAGTGAAGGTTTGGTTGGC
TGTGGTGTGTTGTGGGTCGAGAACGGGTGTCGACGTGTTCTTGCTCCAAC
CACCTGCTGCGAGCCCTCACGGGGTATCAGCCAAGAGGGGTCATATCGCA
CTTCCAACCTCACAGAGAGCTTTCACCGATAATGGGTGCCTTAGATTGAC
CGCCGTGGGATTTGAAATGGATCGCTCGTCTTCGATTTCGCAATCGGTTG
CGTACAAAGCGAATCCGAAGCAAAAACCACTTATTTTAGCAGAATTGTTT
AAGGGCTTTCGGGGTGTTGCAGCGAGGGACATGAAGCTGTGGCGACTGAC
AAGAACAACACCCGCAACCCTCAGCCAACCTGCTAGAGTCACCGATCCCG
TGGGTCTGATGTATAAGAAGGAAACTGCGCAGAAAGTAGCGGTATACATG
CACCACAGCAGTAGAAATCGGTTCTTAGCTCTACTGCTGTACTGTCGTAT
GGTGGGCGCGGCGCCTATCAGCCCGAATCCAACTGCAGCAGGAGTAACGT
CGTGAATCGTGGGCATTGAAATTCGGGCGCAAAATCGCAAACGAGCGATA
GCTAGCGGTGGTGTAGGAGGTTCGTATAAAGCTATCATTATTTGTCACAG
ACAGCGCATGATTGAGAAAAATCCAATACCGCAAACCTAGAAATGTGCCG
ATTTTTTACTTTTTCTTCACCTTTCTATTTGATTTGAATATGCTCAGGCG
ACACATCGAGCTGTCGGGAGAATGTGTTGGGTCCGCGTCCCCATGGCAAG
GAAACCGTAGATGTTTTGACGAGACAAGCAAGCCCGGTGCCGTCGCCAAG
GCACCCAGCCCAAAAGCCGCGACTACGTCATCAGGCAGGAAGCAACGTTG
TCCAGTACGCGACATGGTTGTTCCAGAACCCGCGGTCACGCCAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig78:177615..178658+

>mRNA_P-littoralis_Contig78.37.1 ID=mRNA_P-littoralis_Contig78.37.1|Name=mRNA_P-littoralis_Contig78.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig78:177615..178658+ (Pylaiella littoralis U1_48)
TCTTGGGCGATTTCGACTACGTCGTCTGCACATGTGGACTGCCCCTCGGA
GGTCCCCAAGGCGAACTGTCCCGGCGGAAGCATGGCGGCTCCTGAAGGCG
ACACATCGAGCTGTCGGGAGAATGTGTTGGGTCCGCGTCCCCATGGCAAG
GAAACCGTAGATGTTTTGACGAGACAAGCAAGCCCGGTGCCGTCGCCAAG
GCACCCAGCCCAAAAGCCGCGACTACGTCATCAGGCAGGAAGCAACGTTG
TCCAGTACGCGACATGGTTGTTCCAGAACCCGCGGTCACGCCAT
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