mRNA_P-littoralis_Contig775.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig775.31.1
Unique NamemRNA_P-littoralis_Contig775.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5JQ01_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ01_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.240e-21
Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = -1
Query:  317 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPA 619
            +G LLKV AIGS+ + F Q+ D+     M V LTDVSV E L+FNL ST  VSL+QR++ D+ GVTL NGL FARE K++ A+A R+P+DPS I+ +  A+PA
Sbjct:  303 DGRLLKVEAIGSINLIFFQEGDNGVPTTMYVKLTDVSVVESLSFNLFSTHAVSLRQRIIHDERGVTLRNGLLFAREEKASAAHAMRMPYDPSAIVVDSAALPA 405          
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5J8D5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D5_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.260e-21
Identity = 61/140 (43.57%), Postives = 85/140 (60.71%), Query Frame = -1
Query:  206 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPAVPERTENKSGFPPAAFGSVVPSELSAGVGDMTEILSV 619
            +G LL+V AIGS+ ++F Q  ++     M V LTDVSV E L+FNL ST  VSLKQ+++ DK G TL+NGL FARE K++ AYA R+P+DPS  I +  A+PA     ++     PA   +  PS+       +  +L V
Sbjct:  320 DGRLLEVQAIGSINLSFFQVDENGEQTTMCVKLTDVSVVESLSFNLFSTHAVSLKQQILYDKRGATLQNGLLFAREDKASAAYAIRLPYDPSATIVDPAALPAFVTAPDSA----PAVGSTRSPSQKGGSAESLVSVLRV 455          
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5L7B6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.400e-21
Identity = 62/149 (41.61%), Postives = 87/149 (58.39%), Query Frame = -1
Query:  242 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPS-TIIQNAM-----------PAVPERTENKSG-----------FPPAAFGSVVPSELS 619
            +G LL+V AIGS+ ++F Q+ ++ G   M V LTD+SV E L+FNL S   VSLKQ ++ D+ G TL+NGL FA+E K++ AY  R+P+DPS T++ +A            PAV     ++ G           FPPA   SV+PS  S
Sbjct:  276 DGRLLEVQAIGSINLSFFQEDENGGKTTMCVKLTDLSVVESLSFNLFSMHAVSLKQHILHDERGATLQNGLLFAKEEKASAAYVMRLPYDPSATVVDSAALPAFVTAPDSAPAVGSACFSQKGGSAESWVSLLCFPPAGDASVIPSSES 424          
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5JSL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL0_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 5.630e-21
Identity = 59/140 (42.14%), Postives = 85/140 (60.71%), Query Frame = -1
Query:  206 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPAVPERTENKSGFPPAAFGSVVPSELSAGVGDMTEILSV 619
            +G LL+V AIGS+ ++F Q+ ++     M V LTDVSV E L+FNL ST  VSLKQ ++ DK G TL+NGL FARE K++ AYA R+P+DPS    +  A+PA     ++     PA   +  PS+  +    +  +L +
Sbjct:   18 DGRLLEVQAIGSINLSFFQEDENGEQTTMCVKLTDVSVVESLSFNLFSTHAVSLKQPILYDKRGATLQNGLLFAREEKASAAYAIRLPYDPSATFVDPAALPAFVTAPDSA----PAVGSARFPSQKGSSAKSLVSMLRI 153          
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5JPK8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.480e-20
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = -1
Query:  317 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPA 619
            +G LL+V AIGS+ ++F Q+ ++     M V LTDVSV E L+FNL ST  VSLKQ ++ D+ G TL+NGL FARE K++ AYA R+P+DPS  I +  A+PA
Sbjct:  391 DGRLLEVQAIGSINLSFFQEDENGEKTTMCVKLTDVSVVESLSFNLFSTHAVSLKQPILYDERGATLQNGLLFAREEKASAAYAMRLPYDPSATIVDPAALPA 493          
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5KR35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR35_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.130e-20
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = -1
Query:  317 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPA 619
            +G LL+V AIGS+ ++F Q+ ++ G   M V LTDVSV E L+FNL ST  VSLKQ ++ D  G TL+NGL  ARE K++ AYA R+P+DPS  I +  A+PA
Sbjct: 1011 DGRLLEVQAIGSINLSFFQEDENGGKTTMCVKLTDVSVVESLSFNLFSTHAVSLKQPILYDVRGATLQNGLLLAREEKASAAYAMRLPYDPSATIVDPAALPA 1113          
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5JN35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN35_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.910e-20
Identity = 55/103 (53.40%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  317 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPA 619
            +G LL+V AIGS+ + F Q+ ++     M V LTDVSV E L FNL ST  VSLKQ ++SD  G TL+NGL FARE K + AYA R+P+DPS  I +  A+PA
Sbjct:  495 DGRLLEVQAIGSINLTFFQEDENGEETTMCVKLTDVSVVESLRFNLFSTHAVSLKQPILSDDRGATLQNGLLFAREEKVSAAYAMRLPYDPSATIVDPAALPA 597          
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5JW32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW32_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 6.480e-20
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = -1
Query:  317 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPA 619
            +G LL+V A G + ++  Q+ +D G   M V LTDVSV E L+FNL ST  VSLKQ ++ D+ G TL+NGL FARE K++ AYA R+P+DPS  I +  A+PA
Sbjct:  125 DGRLLEVQASGRINLSVFQEDEDGGKTTMCVKLTDVSVVESLSFNLFSTHAVSLKQPILYDERGATLQNGLLFAREEKASAAYAMRLPYDPSATIVDPAALPA 227          
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5JPG0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPG0_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 8.360e-20
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = -1
Query:  317 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPA 619
            +G LL+V AIGS+ ++F Q+ ++     M V LTDVSV E L+FNL ST   SLKQ ++ D+ G TL+NGL FARE K++ AYA R+P+DPS  I    A+PA
Sbjct:   18 DGRLLQVQAIGSINLSFFQEDENGEKTTMCVKLTDVSVVESLSFNLFSTHAFSLKQPILYDERGATLQNGLLFAREEKASAAYAMRLPYDPSATIVGPAALPA 120          
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5JX58_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX58_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 8.590e-20
Identity = 63/147 (42.86%), Postives = 87/147 (59.18%), Query Frame = -1
Query:  251 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPA---VPE--------RTENKSGFPP-----------AAFGSVVPS 619
            +G LL+V AIGS+ ++F Q+ ++     M V LTDVS+ E L+FNL ST  VSLKQ ++ D+ G TL+NGL FARE K++ AYA R+ +DPS  I +  A+PA    P+        R+ ++ G PP           A   SVVPS
Sbjct:   18 DGRLLEVQAIGSINLSFFQEDENGEQTTMCVKLTDVSLVESLSFNLFSTHAVSLKQPILDDERGATLQNGLLFAREEKASAAYAMRLSYDPSATIVDPAALPAFVTAPDSAPTVGSTRSPSQKGCPPKSSVSMLRIHPAGSASVVPS 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5JQ01_9PHAE1.240e-2154.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J8D5_9PHAE1.260e-2143.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7B6_9PHAE2.400e-2141.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSL0_9PHAE5.630e-2142.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JPK8_9PHAE1.480e-2052.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KR35_9PHAE2.130e-2052.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN35_9PHAE3.910e-2053.40Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW32_9PHAE6.480e-2051.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPG0_9PHAE8.360e-2051.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JX58_9PHAE8.590e-2042.86Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig775contigP-littoralis_Contig775:120376..121102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size621
Hectar predicted targeting categoryother localisation
Exons2
Cds size516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791597.4551222-CDS-P-littoralis_Contig775:120375..1206821680791597.4551222-CDS-P-littoralis_Contig775:120375..120682Pylaiella littoralis U1_48CDSP-littoralis_Contig775 120376..120682 -
1680791597.466815-CDS-P-littoralis_Contig775:120790..1209991680791597.466815-CDS-P-littoralis_Contig775:120790..120999Pylaiella littoralis U1_48CDSP-littoralis_Contig775 120791..120999 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791597.4816804-UTR-P-littoralis_Contig775:120999..1211021680791597.4816804-UTR-P-littoralis_Contig775:120999..121102Pylaiella littoralis U1_48UTRP-littoralis_Contig775 121000..121102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig775.31.1prot_P-littoralis_Contig775.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig775 120376..120999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig775.31.1

>prot_P-littoralis_Contig775.31.1 ID=prot_P-littoralis_Contig775.31.1|Name=mRNA_P-littoralis_Contig775.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=172bp
MQCHMFRFLFSDRRQKILKGGISNAIIHHPFITKHTQYLSHVPNAGTQLG
RNYASKGSGRKTTLIFSTLRHGRHSILNDGARVKRHSCCVRHVGFPLSSK
AQAVLQSHTMLVRHNTLLERYDEGGNQIESQPLSYRNICEHYRHQCHTSV
ILLLFKVHHQTSDGRHFQEMAI
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mRNA from alignment at P-littoralis_Contig775:120376..121102-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig775.31.1 ID=mRNA_P-littoralis_Contig775.31.1|Name=mRNA_P-littoralis_Contig775.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=727bp|location=Sequence derived from alignment at P-littoralis_Contig775:120376..121102- (Pylaiella littoralis U1_48)
CAACAACACACTCAGTGGACCCAATTGAAAAGGGAGTCTTCCCTGCACCA AGTGCCGCTGTACCGAAACCAAACAAATCCTCCTGGGGGTCCAACACGTC AAGATGCAATGCCACATGTTCCGCTTCCTTTTCAGCGATCGGAGACAGAA AATCCTCAAGGGGGGTATCTCCAATGCCATCATTCACCATCCGTTCATCA CAAAGCACACTCAATATCTCAGTCATGTCCCCAACGCCGGCACTCAACTC GGAAGGAACTACGCTTCCAAAGGCAGCGGGCGGAAAACCACTCTTATTTT CAGTACGCTCAGGTTGGGGGGTGGGGATGGACAACGCACTCTCAGGCACT ACACTGCTTTCAGCAGTGGGCGGTACACCAATCTCGTTGAAAGACGCAGA GGAAAACGCGGTCACAGCAGGCACGGCAGGCATAGCATTCTGAATGATGG TGCTAGGGTCAAACGGCACTCTTGTTGCGTACGCCACGTTGGATTTCCCC TCTCTAGCAAAGCGCAAGCCGTTCTCCAAAGTCACACCATGCTTGTCAGA CACAACACGCTGCTTGAGAGATACGACGAAGGTGGAAACCAGATTGAAAG CCAACCCCTCAGCTACAGAAACATCTGTGAGCATTACAGGCATCAGTGCC ATACCTCTGTCATCCTGCTGCTGTTCAAAGTTCACCATCAAACTTCCGAT GGCCGTCACTTTCAAGAGATGGCCATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig775:120376..121102-

>mRNA_P-littoralis_Contig775.31.1 ID=mRNA_P-littoralis_Contig775.31.1|Name=mRNA_P-littoralis_Contig775.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig775:120376..121102- (Pylaiella littoralis U1_48)
ATGCAATGCCACATGTTCCGCTTCCTTTTCAGCGATCGGAGACAGAAAAT
CCTCAAGGGGGGTATCTCCAATGCCATCATTCACCATCCGTTCATCACAA
AGCACACTCAATATCTCAGTCATGTCCCCAACGCCGGCACTCAACTCGGA
AGGAACTACGCTTCCAAAGGCAGCGGGCGGAAAACCACTCTTATTTTCAG
TACGCTCAGGCACGGCAGGCATAGCATTCTGAATGATGGTGCTAGGGTCA
AACGGCACTCTTGTTGCGTACGCCACGTTGGATTTCCCCTCTCTAGCAAA
GCGCAAGCCGTTCTCCAAAGTCACACCATGCTTGTCAGACACAACACGCT
GCTTGAGAGATACGACGAAGGTGGAAACCAGATTGAAAGCCAACCCCTCA
GCTACAGAAACATCTGTGAGCATTACAGGCATCAGTGCCATACCTCTGTC
ATCCTGCTGCTGTTCAAAGTTCACCATCAAACTTCCGATGGCCGTCACTT
TCAAGAGATGGCCATT
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