mRNA_P-littoralis_Contig775.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig775.27.1
Unique NamemRNA_P-littoralis_Contig775.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig775.27.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 4.690e-60
Identity = 94/112 (83.93%), Postives = 103/112 (91.96%), Query Frame = 1
Query:    1 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHNMLHTYDGMDNLEENVNWVGSAELRNTWEHNVDSSSVGTKDVND 336
            KWR LIEP+KYP++E D+ FS RLESVRKDVECFFGILK RFRILKLAMTYQKQERLDYVFFTCCILHNMLHT+DGM  LEE+VNWVGSAEL+NT  HN+DSSSVGTKD+ND
Sbjct:  305 KWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQNTSGHNLDSSSVGTKDLND 416          
BLAST of mRNA_P-littoralis_Contig775.27.1 vs. uniprot
Match: A0A6H5JZL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.090e-50
Identity = 80/113 (70.80%), Postives = 89/113 (78.76%), Query Frame = 1
Query:    4 WRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHNMLHTYDGMDNLEENVNWVGSAELRNTW--EHNVDSSSVGTKDVND 336
            W+ LIEP+KYP++E D+ F  RLESVRKDVECFFGILK RFRILKLAM YQ QER+D VFFTCCILHNMLHT+DGMD L EN NW+ SA +  T   E   D  SVGTKDVND
Sbjct:   18 WQILIEPSKYPLSENDLLFLKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWISSAGVGATLATEPEADCGSVGTKDVND 130          
BLAST of mRNA_P-littoralis_Contig775.27.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 7.300e-50
Identity = 82/114 (71.93%), Postives = 91/114 (79.82%), Query Frame = 1
Query:    1 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHNMLHTYDGMDNLEENVNWVGSAELRNTW--EHNVDSSSVGTKDVND 336
            KW+ LIEP+KYP++E+D+ FS RLESVRKDVECFFGILK RFRILKLAM YQ QER+D VFFTCCILHNMLHT+DGMD L EN NWV SA +  T   E   D  S GTKDVND
Sbjct:  181 KWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTLATEPEADCGSFGTKDVND 294          
BLAST of mRNA_P-littoralis_Contig775.27.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.510e-48
Identity = 80/113 (70.80%), Postives = 89/113 (78.76%), Query Frame = 1
Query:    1 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHNMLHTYDGMDNLEENVNWVGSAELRNT--WEHNVDSSSVGTKDVN 333
            KW+ LIEP+KYP++E D+ FS RLESVRKDVECFFGILK R RIL LAM +Q QER+D VFFTCCILHNMLHT+DGMD L EN NWV SA +  T   E   DS SVGTKDVN
Sbjct:  136 KWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTSVTEPEADSGSVGTKDVN 248          
BLAST of mRNA_P-littoralis_Contig775.27.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.850e-47
Identity = 82/114 (71.93%), Postives = 90/114 (78.95%), Query Frame = 1
Query:    1 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHNMLHTYDGMDNLEENVNWVGSAELRNTW--EHNVDSSSVGTKDVND 336
            KW+ LIEP+KYP++E D+ FS RLESVRKDVECFFGILK RFRILKLAM YQ QER+D VFFTC ILHNMLHT+DGMD L EN NWV SA +  T   E   D  SVGTKDVND
Sbjct:  291 KWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGVGATLTTEPEADCGSVGTKDVND 404          
BLAST of mRNA_P-littoralis_Contig775.27.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.890e-45
Identity = 73/110 (66.36%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    1 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHNMLHTYDGMDNLEENVNWVGSAELRNTWEHN--VDSSSVGTK 324
            KW TLI P+KYPI + D+ FS RLESVRKDVECFFGI+K  FRILKL++ Y KQE +D VFFTCCILHNMLH+YD    +EE  NW G+A L N WEHN  +D SSVG K
Sbjct:   93 KWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAK 202          
BLAST of mRNA_P-littoralis_Contig775.27.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.330e-44
Identity = 77/114 (67.54%), Postives = 86/114 (75.44%), Query Frame = 1
Query:    1 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHNMLHTYDGMDNLEENVNWVGSAELRN--TWEHNVDSSSVGTKDVND 336
            KW+ L+EPTKYP++E DI FS RLESVRKDVECFFGILK  FRI K+AM Y +QER+D VFFTCCILHNMLHT+DGMD L EN  WV SA        E   DSS+VG KD ND
Sbjct:  276 KWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSAGAGTGVATEQEADSSTVGAKDTND 389          
BLAST of mRNA_P-littoralis_Contig775.27.1 vs. uniprot
Match: A0A6H5JXJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ4_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.360e-44
Identity = 74/109 (67.89%), Postives = 80/109 (73.39%), Query Frame = 1
Query:   16 IEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHNMLHTYDGMDNLEENVNWVGSAELRN--TWEHNVDSSSVGTKDVND 336
            +EPTKYP++E DI FS RLESVRKDVECFFGILK RFRILKL M Y +QER+D VFFTCCILHNMLH +DGMD L EN  WV  A        E   DSS VG KD ND
Sbjct:    1 MEPTKYPLSENDILFSKRLESVRKDVECFFGILKGRFRILKLVMAYHEQERIDNVFFTCCILHNMLHIFDGMDQLVENTLWVSGAGAGTGVATEQEADSSFVGAKDTND 109          
BLAST of mRNA_P-littoralis_Contig775.27.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 3.820e-44
Identity = 74/110 (67.27%), Postives = 85/110 (77.27%), Query Frame = 1
Query:    1 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHNMLHTYDGMDNLEENVNWVGSAELRNTWEHN--VDSSSVGTK 324
            KW TLI P+KYPI + D+ FS RLESVRKDVECFFGI+K RFRILKL++ Y KQE +D VFFTCCILHNMLH+YD    +EE  NW G+A L N WEHN  +D SSVG K
Sbjct:  334 KWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAK 443          
BLAST of mRNA_P-littoralis_Contig775.27.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.390e-43
Identity = 70/112 (62.50%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    1 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHNMLHTYDGMDNLEENVNWVGSAELRNTWEHN--VDSSSVGTKDV 330
            +W TLI P+KYP + +D  FS  LESVRKDVECFFGILK RFRILKL M Y K+E +D +FFTCCILHNMLHT+DG+D  +EN +W GSA   + WEH+   D +SVG+K V
Sbjct:   93 EWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFDENTDWTGSAGHHDAWEHDPLTDYTSVGSKGV 204          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig775.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE4.690e-6083.93Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZL5_9PHAE3.090e-5070.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE7.300e-5071.93DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FSK2_ECTSI2.510e-4870.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNX4_9PHAE3.850e-4771.93DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JTC6_9PHAE1.890e-4566.36DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE1.330e-4467.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXJ4_9PHAE1.360e-4467.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE3.820e-4467.27Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE5.390e-4362.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig775contigP-littoralis_Contig775:87496..87831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size337
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.12e-49
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size336
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791598.4983416-CDS-P-littoralis_Contig775:87495..878311680791598.4983416-CDS-P-littoralis_Contig775:87495..87831Pylaiella littoralis U1_48CDSP-littoralis_Contig775 87496..87831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig775.27.1prot_P-littoralis_Contig775.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig775 87496..87831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig775.27.1

>prot_P-littoralis_Contig775.27.1 ID=prot_P-littoralis_Contig775.27.1|Name=mRNA_P-littoralis_Contig775.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMT
YQKQERLDYVFFTCCILHNMLHTYDGMDNLEENVNWVGSAELRNTWEHNV
DSSSVGTKDVND
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mRNA from alignment at P-littoralis_Contig775:87496..87831-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig775.27.1 ID=mRNA_P-littoralis_Contig775.27.1|Name=mRNA_P-littoralis_Contig775.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig775:87496..87831- (Pylaiella littoralis U1_48)
AAGTGGCGTACGTTGATCGAGCCCACCAAATACCCGATAACCGAGGAAGA CATTCGGTTCTCGGGGAGGTTGGAGAGCGTGCGGAAGGATGTGGAGTGCT TTTTCGGTATCCTGAAGGCCCGCTTCAGAATACTCAAGCTCGCCATGACC TACCAGAAGCAGGAGCGCCTGGACTACGTGTTCTTCACGTGCTGCATCCT GCACAATATGCTTCATACCTACGACGGCATGGACAACCTGGAGGAGAACG TCAACTGGGTCGGTAGTGCCGAGCTCCGGAACACGTGGGAGCACAACGTG GACTCCAGCTCGGTCGGGACGAAGGACGTGAACGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig775:87496..87831-

>mRNA_P-littoralis_Contig775.27.1 ID=mRNA_P-littoralis_Contig775.27.1|Name=mRNA_P-littoralis_Contig775.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig775:87496..87831- (Pylaiella littoralis U1_48)
AAGTGGCGTACGTTGATCGAGCCCACCAAATACCCGATAACCGAGGAAGA
CATTCGGTTCTCGGGGAGGTTGGAGAGCGTGCGGAAGGATGTGGAGTGCT
TTTTCGGTATCCTGAAGGCCCGCTTCAGAATACTCAAGCTCGCCATGACC
TACCAGAAGCAGGAGCGCCTGGACTACGTGTTCTTCACGTGCTGCATCCT
GCACAATATGCTTCATACCTACGACGGCATGGACAACCTGGAGGAGAACG
TCAACTGGGTCGGTAGTGCCGAGCTCCGGAACACGTGGGAGCACAACGTG
GACTCCAGCTCGGTCGGGACGAAGGACGTGAACGAC
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