mRNA_P-littoralis_Contig770.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig770.6.1
Unique NamemRNA_P-littoralis_Contig770.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig770.6.1 vs. uniprot
Match: A0A6H5K4T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T3_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.310e-25
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 MTNCNSKHIDVRHHFIRELVGRKEISVIHVASEFQHADFLTKVLTVESFEFHRDFVMNVR 180
            +TN NSKHIDVRHHFIRELV RKEIS+ HV SEFQHADFLTK ++ ESF  HRDFVMN++
Sbjct:   24 ITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 83
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BLAST of mRNA_P-littoralis_Contig770.6.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 6.390e-25
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 MTNCNSKHIDVRHHFIRELVGRKEISVIHVASEFQHADFLTKVLTVESFEFHRDFVMNVR 180
            +TN NSKHIDVRHHFIRELV RKEIS+ HV SEFQHADFLTK ++ ESF  HRDFVMN++
Sbjct:   60 ITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 119
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BLAST of mRNA_P-littoralis_Contig770.6.1 vs. uniprot
Match: A0A6H5KPI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPI2_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.030e-23
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 MTNCNSKHIDVRHHFIRELVGRKEISVIHVASEFQHADFLTKVLTVESFEFHRDFVMN 174
            +TN NSKHIDVRHHFIRELV RKEIS  HV SEFQHADFLTK ++ E F  HRDFVMN
Sbjct:   21 ITNSNSKHIDVRHHFIRELVERKEISNTHVTSEFQHADFLTKAISKEPFALHRDFVMN 78
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BLAST of mRNA_P-littoralis_Contig770.6.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 9.720e-23
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 MTNCNSKHIDVRHHFIRELVGRKEISVIHVASEFQHADFLTKVLTVESFEFHRDFVMNVR 180
            +TN NSKHIDVRHHFIRELV RKEIS+ HV SEFQHADFLTK ++ ESF  HRDFVMN+R
Sbjct:  769 ITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNMR 828
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BLAST of mRNA_P-littoralis_Contig770.6.1 vs. uniprot
Match: A0A6H5JT91_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT91_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.780e-22
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 MTNCNSKHIDVRHHFIRELVGRKEISVIHVASEFQHADFLTKVLTVESFEFHRDFVMNVR 180
            +TN NSKHIDVRHHFIRELV RKEIS+ HV SEFQHADFLTK ++ ESF  HRDFVMN++
Sbjct:  371 ITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 430
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BLAST of mRNA_P-littoralis_Contig770.6.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.250e-22
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 MTNCNSKHIDVRHHFIRELVGRKEISVIHVASEFQHADFLTKVLTVESFEFHRDFVMNV 177
            +TN NSKHIDVRHHFIRELV RKEIS+ HV SEFQH D LTK ++ ESF  HRDFVMN+
Sbjct:  110 ITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESFALHRDFVMNL 168
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BLAST of mRNA_P-littoralis_Contig770.6.1 vs. uniprot
Match: A0A6H5K9U4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U4_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.360e-22
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 MTNCNSKHIDVRHHFIRELVGRKEISVIHVASEFQHADFLTKVLTVESFEFHRDFVMNVR 180
            +TN NSKHIDVRHHFIRELV RKEIS+ HV SEFQHADFLTK ++ ESF  HRDFVMN++
Sbjct:  720 ITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 779
[Close]
BLAST of mRNA_P-littoralis_Contig770.6.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.450e-22
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 MTNCNSKHIDVRHHFIRELVGRKEISVIHVASEFQHADFLTKVLTVESFEFHRDFVMNVR 180
            +TN NSKHIDVRHHFIRELV RKEIS+ HV SEFQHADFLTK ++ ESF  HRDFVMN++
Sbjct: 1413 ITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 1472
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BLAST of mRNA_P-littoralis_Contig770.6.1 vs. uniprot
Match: A0A6H5K3N0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3N0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 6.760e-22
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 MTNCNSKHIDVRHHFIRELVGRKEISVIHVASEFQHADFLTKVLTVESFEFHRDFVMNVR 180
            +TN NSKHIDVRHH IRELV RKEIS+ HV ++FQHADFLTKV++ ESF  HRDFVMN++
Sbjct:  229 ITNSNSKHIDVRHHIIRELVERKEISITHVPTQFQHADFLTKVISKESFALHRDFVMNLQ 288
[Close]
BLAST of mRNA_P-littoralis_Contig770.6.1 vs. uniprot
Match: A0A6H5K826_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K826_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 8.950e-22
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 MTNCNSKHIDVRHHFIRELVGRKEISVIHVASEFQHADFLTKVLTVESFEFHRDFVMNVR 180
            +TN NSKHIDVRHHFIRELV RKEIS+ HV ++FQHADFLTK +  E    HRDFVMN++
Sbjct:   44 ITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAICKEPCALHRDFVMNLQ 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig770.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4T3_9PHAE2.310e-2576.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNH6_9PHAE6.390e-2576.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPI2_9PHAE2.030e-2377.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQN5_9PHAE9.720e-2378.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JT91_9PHAE1.780e-2276.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTT9_9PHAE2.250e-2274.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U4_9PHAE3.360e-2276.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JHY5_9PHAE3.450e-2276.67Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K3N0_9PHAE6.760e-2273.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K826_9PHAE8.950e-2270.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig770contigP-littoralis_Contig770:73683..73977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000023519
PFAMsRVT_2
Model size295
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.34e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,1MIKP@121069|Pythiales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size183
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791593.3033452-CDS-P-littoralis_Contig770:73682..738651680791593.3033452-CDS-P-littoralis_Contig770:73682..73865Pylaiella littoralis U1_48CDSP-littoralis_Contig770 73683..73865 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791593.3152637-UTR-P-littoralis_Contig770:73865..739771680791593.3152637-UTR-P-littoralis_Contig770:73865..73977Pylaiella littoralis U1_48UTRP-littoralis_Contig770 73866..73977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig770.6.1prot_P-littoralis_Contig770.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig770 73683..73865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig770.6.1

>prot_P-littoralis_Contig770.6.1 ID=prot_P-littoralis_Contig770.6.1|Name=mRNA_P-littoralis_Contig770.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
MTNCNSKHIDVRHHFIRELVGRKEISVIHVASEFQHADFLTKVLTVESFE
FHRDFVMNVR*
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mRNA from alignment at P-littoralis_Contig770:73683..73977+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig770.6.1 ID=mRNA_P-littoralis_Contig770.6.1|Name=mRNA_P-littoralis_Contig770.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=295bp|location=Sequence derived from alignment at P-littoralis_Contig770:73683..73977+ (Pylaiella littoralis U1_48)
ATGACCAATTGCAACTCCAAACACATCGATGTTCGACATCATTTCATCAG
AGAATTGGTAGGAAGGAAGGAGATTTCTGTGATTCATGTAGCATCGGAGT
TTCAGCACGCGGATTTCTTGACGAAAGTGTTGACGGTGGAGTCTTTCGAG
TTTCACCGTGATTTTGTAATGAACGTGCGATGATCACCGATTTGCTTTTC
TGTTTTCTGTTTTGATTTTATTTTGAGAAAATTCGACTCTTGGTAAAGTG
TTTTTCGAGGGTAAAATATTTTGGACGAGTTGGAAATTCACCATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig770:73683..73977+

>mRNA_P-littoralis_Contig770.6.1 ID=mRNA_P-littoralis_Contig770.6.1|Name=mRNA_P-littoralis_Contig770.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig770:73683..73977+ (Pylaiella littoralis U1_48)
ATGACCAATTGCAACTCCAAACACATCGATGTTCGACATCATTTCATCAG
AGAATTGGTAGGAAGGAAGGAGATTTCTGTGATTCATGTAGCATCGGAGT
TTCAGCACGCGGATTTCTTGACGAAAGTGTTGACGGTGGAGTCTTTCGAG
TTTCACCGTGATTTTGTAATGAACGTGCGATGA
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