mRNA_P-littoralis_Contig768.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig768.22.1
Unique NamemRNA_P-littoralis_Contig768.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig768.22.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.850e-22
Identity = 67/182 (36.81%), Postives = 97/182 (53.30%), Query Frame = 2
Query:  125 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE--------TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQKEAAANAKNAA 643
            P  P P+  ++ ++   + A++A   T               TRR   +RE   Y+ E    D D  F  L YW  R  D +  + G V +PA  P++  IARL+LG++ATSCQAERNFSAL  ++  LR N  P+KVE+ +F+RLN+HL+      +R+ DA   + KA K   A +  AA
Sbjct:  657 PVEPAPKKKKLSRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDG-FNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVA----EVRELDAAVVKAKAAKTKVAQSSMAA 833          
BLAST of mRNA_P-littoralis_Contig768.22.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.280e-22
Identity = 69/179 (38.55%), Postives = 100/179 (55.87%), Query Frame = 2
Query:  125 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE-----TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQKEAAANAKNAA 643
            PA    +L+R+E+ R A+ A        + ++ +     TRR   +RE   Y+ E    D D  F  L YW  R  D +  + G V +PA  P++  IARL+LG++ATSCQAERNFSAL  ++  LR N  P+KVE+ +F+RLN+HL+      +R+ DA   + KA K   A +  AA
Sbjct:  465 PAPKKKKLSRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDG-FNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVA----EVRELDAAVVKAKAAKTKVAQSSMAA 638          
BLAST of mRNA_P-littoralis_Contig768.22.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.030e-19
Identity = 68/184 (36.96%), Postives = 100/184 (54.35%), Query Frame = 2
Query:  125 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE-----TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGL-DKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDAL------QAERKAQKEAAANAKNA 640
            PA+   +L+R+E+ R A+ A  A    AS +V+       RR   +RE   Y+ E    + D  F  L +W  R  D +   +GNV +PA  P++  IARL LG++A+SCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+      +R+ DA       +A + AQK  A   + A
Sbjct:   84 PASKRKKLSRLEERRAARVA-AASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDD-FNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVD----EVRELDAAVSLARAKAAKSAQKSVACQEERA 261          
BLAST of mRNA_P-littoralis_Contig768.22.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.210e-18
Identity = 57/140 (40.71%), Postives = 77/140 (55.00%), Query Frame = 2
Query:  230 RRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGK--ALRDWDALQAERKAQKEAAANAKNA 640
            RR   +RE   Y+ E    D D  F  L +W  R  D +  + G V +PA  P++  IARLHLG++ATSCQAERNFSAL  ++ DL  N    +VE+ + +RLNKHL+  +    A   W    A   A+K A A  + A
Sbjct:  501 RRVLIEREMLVYLAEQPQVDVDD-FNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLLAEVRAYDAAVAWARAMAANSAEKSAVAQEERA 639          
BLAST of mRNA_P-littoralis_Contig768.22.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.400e-18
Identity = 68/184 (36.96%), Postives = 100/184 (54.35%), Query Frame = 2
Query:  125 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE-----TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGL-DKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDAL------QAERKAQKEAAANAKNA 640
            PA+   +L+R+E+ R A+ A  A    AS +V+       RR   +RE   Y+ E    + D  F  L +W  R  D +   +GNV +PA  P++  IARL LG++A+SCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+      +R+ DA       +A + AQK  A   + A
Sbjct:  649 PASKRKKLSRLEERRAARVA-AASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDD-FNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVD----EVRELDAAVSLARAKAAKSAQKSVACQEERA 826          
BLAST of mRNA_P-littoralis_Contig768.22.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.290e-17
Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = 2
Query:  230 RRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLN 538
            RR   +RE   Y+ E    D D  F  L +W  R  D +  + G V +PA  P++  IARLHLG++ATSCQAERNFSAL  ++ D R N    +VE+ + +RLN
Sbjct:  118 RRVLIEREMLVYLAEQPQVDVDD-FNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVRLN 220          
BLAST of mRNA_P-littoralis_Contig768.22.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.310e-17
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 2
Query:  230 RRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQKEAAANAKNAAA 646
            RR   +RE   Y+ E    D D  F  + +W  R  D +  + G V +PA  P++  IARLHLG++ATSCQAERNFSAL  ++ +LR N  P +VE+ + +RLN+ ++      +R +DA  A  +A++ A  NA  +AA
Sbjct:  397 RRVLIEREMLVYLAEQPQLDVDG-FNLIGFWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRMLD----EVRAFDA--AVSRAREMATKNAAKSAA 529          
BLAST of mRNA_P-littoralis_Contig768.22.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.070e-17
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = 2
Query:  245 QREYAEYMKEAALTDTDPTFTALEYWKPRAVDGL-DKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 550
            +RE   Y+ E    D D  F  + +W  R  + +   +G V APA  P++  IARLHLG++ATSCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+
Sbjct:  388 EREVLVYLAEQPQVDVDG-FNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLL 489          
BLAST of mRNA_P-littoralis_Contig768.22.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.230e-16
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 2
Query:  353 SGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQKEAAANAKNAAAG 649
            +G V +PA  P++  IARL+LG++ATSCQAERNFSA   ++  LR    P+K E+T+F+RLN+HL+      +R+ DA  A+ KA     A +  AA G
Sbjct:  335 TGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLNRHLVA----EVRELDAAVAQAKATATKTAQSSMAAQG 429          
BLAST of mRNA_P-littoralis_Contig768.22.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.150e-15
Identity = 67/169 (39.64%), Postives = 96/169 (56.80%), Query Frame = 2
Query:  167 RLAQNAKIARPNTASSAVRETRRAA-AQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQ---KEAAANAKNAAAGGAGV 661
            RLA++   +    A +AV   RR A  +RE   Y+ E    + +  F+ LE+W+ R+          V P   PH+ LIARL  G+++TSCQAERNFSAL  ++  LR++  P KVE+ +FLRLN+  IP + KAL D  A++A + A    +E  A  +  AAG A V
Sbjct:  341 RLAKSKAASAGRAAPAAVSTARRGAIVERELRMYLAEDPAEE-EYDFSLLEFWQRRSKPRTCAETGEVEPGL-PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEV-KALHD--AVEANKAAAARCQEKVAQVEAEAAGDAVV 504          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig768.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JGG8_9PHAE1.850e-2236.81Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JTB8_9PHAE2.280e-2238.55Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJT6_9PHAE2.030e-1936.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE1.210e-1840.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE2.400e-1836.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7P7_9PHAE2.290e-1744.23Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JXV5_9PHAE2.310e-1740.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE3.070e-1744.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE5.230e-1645.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE2.150e-1539.64Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig768contigP-littoralis_Contig768:107156..107869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7029.ACYPI51208-PA
PFAMsDimer_Tnp_hAT
Model size714
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.59e-05
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,3AJC9@33154|Opisthokonta,3BV3P@33208|Metazoa,3DF56@33213|Bilateria,4224I@6656|Arthropoda,3SQFR@50557|Insecta
DescriptionhAT family C-terminal dimerisation region
Cds size528
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791583.2948782-UTR-P-littoralis_Contig768:107155..1073091680791583.2948782-UTR-P-littoralis_Contig768:107155..107309Pylaiella littoralis U1_48UTRP-littoralis_Contig768 107156..107309 +
1680791583.318925-UTR-P-littoralis_Contig768:107837..1078691680791583.318925-UTR-P-littoralis_Contig768:107837..107869Pylaiella littoralis U1_48UTRP-littoralis_Contig768 107838..107869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791583.3064017-CDS-P-littoralis_Contig768:107309..1078371680791583.3064017-CDS-P-littoralis_Contig768:107309..107837Pylaiella littoralis U1_48CDSP-littoralis_Contig768 107310..107837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig768.22.1prot_P-littoralis_Contig768.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig768 107310..107837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig768.22.1

>prot_P-littoralis_Contig768.22.1 ID=prot_P-littoralis_Contig768.22.1|Name=mRNA_P-littoralis_Contig768.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=176bp
MEKIRLAQNAKIARPNTASSAVRETRRAAAQREYAEYMKEAALTDTDPTF
TALEYWKPRAVDGLDKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNF
SALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERK
AQKEAAANAKNAAAGGAGVTPDAVL*
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mRNA from alignment at P-littoralis_Contig768:107156..107869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig768.22.1 ID=mRNA_P-littoralis_Contig768.22.1|Name=mRNA_P-littoralis_Contig768.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=714bp|location=Sequence derived from alignment at P-littoralis_Contig768:107156..107869+ (Pylaiella littoralis U1_48)
GACTACTTCCTTGGGTACACGAAGGCGCAGAGTGAGGAACAGGGTACCGC AACGCCTTCACTCTCGCTCTCGGGGGCAGGGGGCAGGAGGCGGCAATGGC TCGACGGCGGCAGGCACCGAGGCGCCAGCGGCGCCAGTGCCTCAGCTGAC TAGGATGGAAAAGATAAGGCTGGCTCAGAACGCAAAGATCGCCCGGCCGA ATACCGCCAGCTCTGCTGTCCGCGAGACGCGAAGGGCTGCCGCACAACGG GAGTACGCCGAGTACATGAAGGAGGCAGCTCTCACTGACACCGACCCCAC TTTCACTGCCCTAGAGTACTGGAAGCCGCGGGCAGTTGATGGGCTCGACA AATCGGGGAACGTTGTCGCTCCTGCCCGCTGGCCGCATGTTGGCTTGATA GCGCGGTTGCACCTAGGCGTTGATGCAACCAGTTGCCAAGCGGAAAGGAA TTTTTCCGCCCTCAAGTTGATCGTTAGCGACCTACGTGCGAACACTTCCC CCGCCAAGGTTGAGAAGACTATTTTTCTTAGGCTTAACAAGCACCTTATC CCCGGGCTAGGGAAGGCGTTGAGGGATTGGGATGCCTTGCAGGCTGAGCG GAAGGCGCAGAAAGAAGCAGCAGCTAACGCTAAGAACGCTGCGGCAGGTG GCGCGGGTGTTACCCCTGATGCAGTTTTGTAGGAGCGAGACTTCGTTCAT GTCTATTTGCAATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig768:107156..107869+

>mRNA_P-littoralis_Contig768.22.1 ID=mRNA_P-littoralis_Contig768.22.1|Name=mRNA_P-littoralis_Contig768.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig768:107156..107869+ (Pylaiella littoralis U1_48)
ATGGAAAAGATAAGGCTGGCTCAGAACGCAAAGATCGCCCGGCCGAATAC
CGCCAGCTCTGCTGTCCGCGAGACGCGAAGGGCTGCCGCACAACGGGAGT
ACGCCGAGTACATGAAGGAGGCAGCTCTCACTGACACCGACCCCACTTTC
ACTGCCCTAGAGTACTGGAAGCCGCGGGCAGTTGATGGGCTCGACAAATC
GGGGAACGTTGTCGCTCCTGCCCGCTGGCCGCATGTTGGCTTGATAGCGC
GGTTGCACCTAGGCGTTGATGCAACCAGTTGCCAAGCGGAAAGGAATTTT
TCCGCCCTCAAGTTGATCGTTAGCGACCTACGTGCGAACACTTCCCCCGC
CAAGGTTGAGAAGACTATTTTTCTTAGGCTTAACAAGCACCTTATCCCCG
GGCTAGGGAAGGCGTTGAGGGATTGGGATGCCTTGCAGGCTGAGCGGAAG
GCGCAGAAAGAAGCAGCAGCTAACGCTAAGAACGCTGCGGCAGGTGGCGC
GGGTGTTACCCCTGATGCAGTTTTGTAG
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